GBrowse Details

Vigan.05G222100.01

Basic Information:
Name: Vigan.05G222100.01
Multiple alignment
Variant Information
Position: Chr05:23684489..23688879 (+ strand)
Length: 4391
Functional Information:
Description: Similar to Uncharacterized protein. [K7LXA6, Glycine max]
GO: Biological Process: terpenoid biosynthetic process (GO:0016114)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity (GO:0050515)
InterPro: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (IPR004424)
GHMP kinase N-terminal domain (IPR006204)
GHMP kinase, C-terminal domain (IPR013750)
Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721)
Ribosomal protein S5 domain 2-type fold (IPR020568)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.85,14.10,23.88,25.89,13.01,13.08,19.64,14.44
Arabidopsis thaliana homolog: AT2G26930.1
Automatic updates:
Name: NM_001255958 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic-like (LOC100812541), mRNA; nuclear gene for chloroplast product.
PubMed ID: 30786857 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:23684489..23684738 (+ strand)
Length: 250
Type: five_prime_UTR
Position: Chr05:23684739..23684927 (+ strand)
Length: 189
Type: CDS
Position: Chr05:23685174..23685269 (+ strand)
Length: 96
Type: CDS
Position: Chr05:23685353..23685421 (+ strand)
Length: 69
Type: CDS
Position: Chr05:23685536..23685640 (+ strand)
Length: 105
Type: CDS
Position: Chr05:23685731..23685787 (+ strand)
Length: 57
Type: CDS
Position: Chr05:23685924..23686124 (+ strand)
Length: 201
Type: CDS
Position: Chr05:23686638..23686730 (+ strand)
Length: 93
Type: CDS
Position: Chr05:23686816..23686915 (+ strand)
Length: 100
Type: CDS
Position: Chr05:23687173..23687272 (+ strand)
Length: 100
Type: CDS
Position: Chr05:23687722..23687807 (+ strand)
Length: 86
Type: CDS
Position: Chr05:23688418..23688515 (+ strand)
Length: 98
Type: CDS
Position: Chr05:23688516..23688879 (+ strand)
Length: 364
Type: three_prime_UTR

>Vigan.05G222100.01 class=Sequence position=Chr05:23684489..23688879 (+ strand)
CTTTAATCAG TCCCCCATTA AAGCCTGCTC TGCTACCCAG ACTCTGAAAA AAACATGTAA AGAAGTAATT TGTCGGCTTT
GACCGTTTGA ATTAGAGTTT TAAAACAGTG TTTAAACCAT TCTTAAGAAT TTTTCCTACC GGCACAATTG AATTTGACCA
GATTTTGTAG GAAGAATAAA CGAACAAGAA GCGCTTTTTT TGACGTACCC AATCTGTAGC TGAATTGAAG TTCCGATCTT
TCAACCACAC ATGGCTGCGT CTCACCTTCT TTGCAGTAGC TATGTCTTCC CCACTTCTCA AAACTCCTTC AGAAGTAGCC
ATTTTTCTCA ATTCAGACCA AATGGGTCAT CCACTTTTCA TTCTAAGCTT CGGTTTCAGA GACCTCACTT GGTTAGAGCC
ATGGTTTCCG ATTCCAATAC TTCTAAGAGA CAAGTAGAGG TTACATATTT TGCTCCCCCA ATTTCTTTTT TCTTATGCTT
TTGACTGATT GAAGTTTCAG TAGTGTTGTT TGTGTAGAAA TACGTTTGTT TAGGGATAAA GTTTGAAAAT TTTTTTTAGT
GTGTTATGCT TTGGATCGAA GTTTCAGTGT GGTTGTTTGT GTATAATAAC ATTTGTTTTA GGGTTGAATT TTGCTTTTCA
ACAGATGTTT TTAAAAAATT TCTGATCTTT TGTTGGTGAG ATTAGATTGT GTATGACCCT GAAGCAAGGA TTAACAAGTT
GGCTGATGAA GTGGACAGGG AAGCTCCCCT TTCTAGGCTT ACTTTGTTCT CTCCTTGCAA GGTAACCACC TTCCCCGTGC
TTTTTCTTGG AGGCTACCCA AATTTGGTTG TTTTGTGTTG AAATTGCTAC CCTTTATTCT GCAGATAAAT GTTTTCTTGA
GAATAACAAA CAAGAGGGAA GATGGGTATC ATGACTTGGC ATCCCTTTTT CATGTAAGAG GTTATGACAA TTTGGCAACT
ACCTCAGTGC TCTCTTATTT CATTTACCTT TTAATATGGT TTATGCATTC TTGAGCATGT CTTACTTGCA TTTTTGGAGT
CTTTCAGGTG ATAAGTCTAG GTGACATAAT TAAGTTCTCT TTGTCACCTT CAAAAACCAA GGATAGTCTA TCAACCAATG
TGTCTGGGGT GCCCCTTGAT GATAGAAATC TGGTACTAAT GTTTCCCTTC TCATTCTTTT CTTCTTCTGG TCATTTATCT
GTTCAGATTC CAGAATGTTA TATTGAAATT CTCTTTTAAC AGATTATTAA GGCGCTTAAC CTTTATAGGA AGAAGACTGG
TAGTGACAAG TTCTTTTGGG TACGAAGTAA CGATGTTTAT TCTCTTCCTA TTTTACCATT TTTAATTGAA AGCTGCATGC
TTCTTTCTTT TCATATAATA AACTCAACTT ACTCCAAGAT TTCATGTGTA TAAGGTATAT TCATGTTGTT TTCAGATTCA
TCTGGATAAA CGCGTGCCTA CTGGGGCAGG GCTTGGGGGT GGAAGTAGCA ATGCTGCAAC TGCACTATGG GCAGCAAATC
AATTCAGTGG TTGCCTTGCT TCAGAGAAAG AACTCCAAGA ATGGTCAAGT GAGATTGGAT CAGATATTCC CTTCTTTTTC
TCTCAGGGAG CAGCCTATTG CACTGGTCGA GGAGAGGTTA GTCAAAAAAT TAGGTACCTT CCATTCGCAA TTTGCTTTCT
TATTTATTGT TACATCTTGC TGTCCGGATT CACCATGTAT GTCACCAATT GATATTGATA ATATTTCAAA ATTCTGATTG
GATCCTATAA TTGTGAAGGG ATTTATGTCA CTTCCTAGAA TACAGCTTAA AGAGTCATGG TATAAAACTT TGATATTATT
GTATGTAAGA TGGCCAAGTG AATCCAGCAT TTACCATTGT TGGTTCAGAT CGCCAAGATT GATCTTTATT ACTGAAACCT
TTAATAATTT AGTACAGACA CCAGATCATT TTTGTCATGG ATGGAAAGGA ATTTGTCTGT TCCTAAAATA TTTAATGTGA
AGTGATTTAT GTAACTATTG TGTTCGACTG TGTCTAAGAA TTCCCATGCA TTTATAACCT TTTAACCATT TGCAGGCAGC
TAAACTTATA TTCAAGATGA TTTCCCTTTC ATTGTATTTT ATTCAAGATT TTTTCTTTCA CCTGTGCAGG TTGTTCAGAA
TATTCCTCCA CCAGTATCTC TGGACGTTCC AATGGTTCTC ATAAAGCCCC CAGAAGCATG TTCGACTGCA GAAGTCTACA
AGGTATCTGT CTTTTCGGAG TATTAATGAA ATTATACCCC CGTCCCCCAA CTTTTAGTCC CAAATTTAAC AACTTCCAAT
GGTACAGCGT CTACGTTTGG ACCAGACTAG TAATGTTGAT CCTTTAACAT TGTTGGACAA GATCTCAAAA ATTGGAATCT
CACAAGATGT TTGTATTAAT GATTTAGGTA TGCTTTTATC TATGTATTTT CTCACTTTTC CTTTGATTTG ATTTTATTGA
ATGCAAGTTG TACATAATTC TATGAGATCT ACAATGATGG TAAATAGCAC AACTGATATT CTACTATTCT ATTTTCATTA
TATAATTGTA TGTACAATTT ACTCCAATCA TTGGCACAGT TATATTTGAT TCTCATTGAA GTTCTGTTCT GGTGCTTTTG
ACTTTAATTT TCTTTTCATG TTTTCCTTTT TCCTTCATCT CCAGAACCTC CCGCGTTTGA AGTTCTCCCA TCTCTCAAAA
GACTGAAGCA GCGCATTAGT GCAGCTGGTC GTGGAGAATA TGGTGCTGTT TTTATGTCAG GAAGGTGAAA ACACTCGAAA
ACCTATTATT CTTTAATATC TAGACTGTCA TTTTTGTATA AGTCATAGAA ACATGCTAGA GCTGGCCCCA GGCACAAATA
TATTGTGTGT TTGTTTCCAA AGGTTTCTCC ACACCCTTTG TATGTGATAC TAATCCCTTC TGCCACAGAG CAATGCTGTT
AGTCACTCTT CACAATTATT ATCTCCTGTT CCTCCATATT TATCCCTTTA TATTCCATTC AGAAATATGA GAGAATAAGG
TTTTTCATCC TCTATTTTCT ACAATTCTTT TATAATCAAT TCTATCAAAG GTTATACATA AAAGTAAACT GAGGTATTAA
TTCTTCTGAA GTGGTCAATA TTTTTCTTGA TCTTCTTTCT TTTAGTTGTA ATATGGAGTC TGATTTGAAA AGATGCAATC
ATTTTATATG CTGTCTGAAT ACATCTCATG CAGTGGAAGC ACCATTGTTG GAATTGGCTC TCCTGATCCT CCACAATTTG
TTTATGATGA TGATGAATAC AAAGATGTGT TCTTATCAGG TAAGCTTTGA TAAATTAAAC TTGAAAGTAG AAAATTACAT
CCATGTTTGA TATATTGAAG CTCTAGTTCC ATGTGCAGAC ATCCATTATC CAGAAGCTGA AATGAGTAAT TCTACGTTAC
TTATGATTTG GAAAGTGGGA AATGCATTTT TACCTGTTCA CATTGGCTAA TTTTACTTAT ATAGCATATA AGAATGTGCA
GAGGTGCAAC ATGCATTTCA TCTGCAAAAT GAGTTGTCAT CAGAAACATA AATCCCTTAC AATATTATTT TAATTTGAAA
AGTTAACTAA GGTCAATTCA AATGCCCCTG TTGAATGAAG TCCTTAAAAG TTCTTCTCTA ACTGCATTAA CTGAAAGGGT
TAATTTTATT TCAGCACTCA ATGAAGTATT AATTTTATTT CTAATTTAAA CTATATCATT GTTAATGTAT ATGCACCAGA
TAAAAGTAAT GCATTTACTG GGAAAAGGTT ATTTTAGTGA AACTATTTCA ACAAGTGTAT GCATTTTATA TTACCAAGAA
GTTAAGTACA TATATTTATT AGATGGTGTT TTAGAACGAG CTTATGATGG ATTTTGATTT TGATGTGAAT TTCTCACCGT
CATTTGCAGA TGCCTATTTT CTCACTAGGG AGGCAAACCA GTGGTATCAA GAACCTGCTT CAAATCCTTC TTCTGCCTCT
GCTTCTGTTG TTTCAGACTC TGTTTAAGCA TATGGTCTTT CAAGATAAGA AGACAGTAAT GCAGAATTGC ATTATCTTGT
CTTTTTCTCC TGCATCATTC AATGATGTAA AAATTAAGTT TTGCAATTTA ACTGCTGGGA AACAATAAAG TTAGAGAGAT
AATCGGTTGA ATAAATATTA AGGAGGGCTT CTAAGAAGTA ACAATGTCCG AATAATTTGT CGTGGTTATT AGCAATTATT
CAGAGACCCC AAAAATTAAT GTTGCAAGTT AAAGATGATC TTAGTTTGTT TCAAAGTTGG ATGGTCTTTT TGATTTTTGA
ATCACTTAAT GTAATTAACA TTGGAATGTT TATATGGTGA AAATTTGATT TTTGATATTT TACCTGCACA G

>Vigan.05G222100.01
CTTTAATCAG TCCCCCATTA AAGCCTGCTC TGCTACCCAG ACTCTGAAAA AAACATGTAA AGAAGTAATT TGTCGGCTTT
GACCGTTTGA ATTAGAGTTT TAAAACAGTG TTTAAACCAT TCTTAAGAAT TTTTCCTACC GGCACAATTG AATTTGACCA
GATTTTGTAG GAAGAATAAA CGAACAAGAA GCGCTTTTTT TGACGTACCC AATCTGTAGC TGAATTGAAG TTCCGATCTT
TCAACCACAC ATGGCTGCGT CTCACCTTCT TTGCAGTAGC TATGTCTTCC CCACTTCTCA AAACTCCTTC AGAAGTAGCC
ATTTTTCTCA ATTCAGACCA AATGGGTCAT CCACTTTTCA TTCTAAGCTT CGGTTTCAGA GACCTCACTT GGTTAGAGCC
ATGGTTTCCG ATTCCAATAC TTCTAAGAGA CAAGTAGAGA TTGTGTATGA CCCTGAAGCA AGGATTAACA AGTTGGCTGA
TGAAGTGGAC AGGGAAGCTC CCCTTTCTAG GCTTACTTTG TTCTCTCCTT GCAAGATAAA TGTTTTCTTG AGAATAACAA
ACAAGAGGGA AGATGGGTAT CATGACTTGG CATCCCTTTT TCATGTGATA AGTCTAGGTG ACATAATTAA GTTCTCTTTG
TCACCTTCAA AAACCAAGGA TAGTCTATCA ACCAATGTGT CTGGGGTGCC CCTTGATGAT AGAAATCTGA TTATTAAGGC
GCTTAACCTT TATAGGAAGA AGACTGGTAG TGACAAGTTC TTTTGGATTC ATCTGGATAA ACGCGTGCCT ACTGGGGCAG
GGCTTGGGGG TGGAAGTAGC AATGCTGCAA CTGCACTATG GGCAGCAAAT CAATTCAGTG GTTGCCTTGC TTCAGAGAAA
GAACTCCAAG AATGGTCAAG TGAGATTGGA TCAGATATTC CCTTCTTTTT CTCTCAGGGA GCAGCCTATT GCACTGGTCG
AGGAGAGGTT GTTCAGAATA TTCCTCCACC AGTATCTCTG GACGTTCCAA TGGTTCTCAT AAAGCCCCCA GAAGCATGTT
CGACTGCAGA AGTCTACAAG CGTCTACGTT TGGACCAGAC TAGTAATGTT GATCCTTTAA CATTGTTGGA CAAGATCTCA
AAAATTGGAA TCTCACAAGA TGTTTGTATT AATGATTTAG AACCTCCCGC GTTTGAAGTT CTCCCATCTC TCAAAAGACT
GAAGCAGCGC ATTAGTGCAG CTGGTCGTGG AGAATATGGT GCTGTTTTTA TGTCAGGAAG TGGAAGCACC ATTGTTGGAA
TTGGCTCTCC TGATCCTCCA CAATTTGTTT ATGATGATGA TGAATACAAA GATGTGTTCT TATCAGATGC CTATTTTCTC
ACTAGGGAGG CAAACCAGTG GTATCAAGAA CCTGCTTCAA ATCCTTCTTC TGCCTCTGCT TCTGTTGTTT CAGACTCTGT
TTAAGCATAT GGTCTTTCAA GATAAGAAGA CAGTAATGCA GAATTGCATT ATCTTGTCTT TTTCTCCTGC ATCATTCAAT
GATGTAAAAA TTAAGTTTTG CAATTTAACT GCTGGGAAAC AATAAAGTTA GAGAGATAAT CGGTTGAATA AATATTAAGG
AGGGCTTCTA AGAAGTAACA ATGTCCGAAT AATTTGTCGT GGTTATTAGC AATTATTCAG AGACCCCAAA AATTAATGTT
GCAAGTTAAA GATGATCTTA GTTTGTTTCA AAGTTGGATG GTCTTTTTGA TTTTTGAATC ACTTAATGTA ATTAACATTG
GAATGTTTAT ATGGTGAAAA TTTGATTTTT GATATTTTAC CTGCACAG

>Vigan.05G222100.01
ATGGCTGCGT CTCACCTTCT TTGCAGTAGC TATGTCTTCC CCACTTCTCA AAACTCCTTC AGAAGTAGCC ATTTTTCTCA
ATTCAGACCA AATGGGTCAT CCACTTTTCA TTCTAAGCTT CGGTTTCAGA GACCTCACTT GGTTAGAGCC ATGGTTTCCG
ATTCCAATAC TTCTAAGAGA CAAGTAGAGA TTGTGTATGA CCCTGAAGCA AGGATTAACA AGTTGGCTGA TGAAGTGGAC
AGGGAAGCTC CCCTTTCTAG GCTTACTTTG TTCTCTCCTT GCAAGATAAA TGTTTTCTTG AGAATAACAA ACAAGAGGGA
AGATGGGTAT CATGACTTGG CATCCCTTTT TCATGTGATA AGTCTAGGTG ACATAATTAA GTTCTCTTTG TCACCTTCAA
AAACCAAGGA TAGTCTATCA ACCAATGTGT CTGGGGTGCC CCTTGATGAT AGAAATCTGA TTATTAAGGC GCTTAACCTT
TATAGGAAGA AGACTGGTAG TGACAAGTTC TTTTGGATTC ATCTGGATAA ACGCGTGCCT ACTGGGGCAG GGCTTGGGGG
TGGAAGTAGC AATGCTGCAA CTGCACTATG GGCAGCAAAT CAATTCAGTG GTTGCCTTGC TTCAGAGAAA GAACTCCAAG
AATGGTCAAG TGAGATTGGA TCAGATATTC CCTTCTTTTT CTCTCAGGGA GCAGCCTATT GCACTGGTCG AGGAGAGGTT
GTTCAGAATA TTCCTCCACC AGTATCTCTG GACGTTCCAA TGGTTCTCAT AAAGCCCCCA GAAGCATGTT CGACTGCAGA
AGTCTACAAG CGTCTACGTT TGGACCAGAC TAGTAATGTT GATCCTTTAA CATTGTTGGA CAAGATCTCA AAAATTGGAA
TCTCACAAGA TGTTTGTATT AATGATTTAG AACCTCCCGC GTTTGAAGTT CTCCCATCTC TCAAAAGACT GAAGCAGCGC
ATTAGTGCAG CTGGTCGTGG AGAATATGGT GCTGTTTTTA TGTCAGGAAG TGGAAGCACC ATTGTTGGAA TTGGCTCTCC
TGATCCTCCA CAATTTGTTT ATGATGATGA TGAATACAAA GATGTGTTCT TATCAGATGC CTATTTTCTC ACTAGGGAGG
CAAACCAGTG GTATCAAGAA CCTGCTTCAA ATCCTTCTTC TGCCTCTGCT TCTGTTGTTT CAGACTCTGT TTAA

>Vigan.05G222100.01
MAASHLLCSS YVFPTSQNSF RSSHFSQFRP NGSSTFHSKL RFQRPHLVRA MVSDSNTSKR QVEIVYDPEA RINKLADEVD
REAPLSRLTL FSPCKINVFL RITNKREDGY HDLASLFHVI SLGDIIKFSL SPSKTKDSLS TNVSGVPLDD RNLIIKALNL
YRKKTGSDKF FWIHLDKRVP TGAGLGGGSS NAATALWAAN QFSGCLASEK ELQEWSSEIG SDIPFFFSQG AAYCTGRGEV
VQNIPPPVSL DVPMVLIKPP EACSTAEVYK RLRLDQTSNV DPLTLLDKIS KIGISQDVCI NDLEPPAFEV LPSLKRLKQR
ISAAGRGEYG AVFMSGSGST IVGIGSPDPP QFVYDDDEYK DVFLSDAYFL TREANQWYQE PASNPSSASA SVVSDSV*