GBrowse Details

Vigan.05G213500.01

Basic Information:
Name: Vigan.05G213500.01
Multiple alignment
Variant Information
Position: Chr05:20514703..20516569 (- strand)
Length: 1867
Functional Information:
Description: Similar to SWIB/MDM2 domain superfamily protein. [XP_007020708.1, Theobroma cacao]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: SWIB/MDM2 domain (IPR003121)
SWIB domain (IPR019835)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:18.90,13.30,5.18,7.60,12.75,19.45,22.46,6.61
Arabidopsis thaliana homolog: AT4G26810.1
Automatic updates:
Name: NM_001249121 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527179 (LOC100527179), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:20514703..20515047 (- strand)
Length: 345
Type: three_prime_UTR
Position: Chr05:20515048..20515176 (- strand)
Length: 129
Type: CDS
Position: Chr05:20516191..20516364 (- strand)
Length: 174
Type: CDS
Position: Chr05:20516365..20516569 (- strand)
Length: 205
Type: five_prime_UTR

>Vigan.05G213500.01 class=Sequence position=Chr05:20514703..20516569 (- strand)
AAAAATTAAA ACCCCTTAAA CCTTGTGTGA GTAAAGGTTC TGCTGTGGCA ATGCCCTGCA AACCTCTTTT TTCTCCTCCA
TTGCCATTCA TTTCGTAGCG TCCTTCAAGT TCCAACCACA CTACCCTCTA TTTCTTCGTC AAGCTTCGTG TTTTATCGGT
GCCCAACTCC TTTTAGGCGT TGAATTTCAG GGATTCAAAG CAAAAATGCT CCCTCAGCGC ATGAAGAAAG CCATCACTGA
CAACCCTAAG AAGCTTGCCA ACTTGATTGA CCTCGTCAAC CTTCCATCCA CGCTCAGAGA ATTCGTGGGC CAGTCTCAGA
TTTCCCGTTT GGGTTGTTTC ATGTCGGTTT GGTCCTACAT CAAAGCCAAT AATCTGCAGG TTCCCCCTCT CTTCTTTTAA
AAATGTGATA TTTTTGTTGA AGTTACGTTC AATTCTATCT TGTGGTTTGT TGGATTTTGA CTCGCTTTTG AAGTTTGTAA
AATTTATCTT ATGTGAATTG TTTAGACAGA ATTATGTGAA TTGTTTGTTA ATGGATTATT GTTGAAGAGT TAGAGTTCAA
GATACGACTT TTGAGCTAAG GGTTTTATTA GAAAATTCAA GGAGTTTTGT TTTTGAAATA TATATTGCCT TCTCTTTGGA
GAGGCAGTGA TTAAAAGAGG CAGGAAGTAG GAACTGCGAA TGACTGGAAT GGACCTTTAT AAGGTAGTTG AGTAATTTAA
TATTGATACA CCTAGCCCAT TTTTGAATAT GTACTGGGGA ATGGAATGGA TTTGAATAAA GTTACTATTC CATTGTTTGG
TAATTTTGTA ACGGAATGGG AAAAAAGGGT ATGATTCTAT GCCCCCAAAT TGGAAGGGAA GAAAGAAATG AGTATTTGAT
TGAATGGAAT GCTTTCTATT ATGTTTCATT CCATTTCATC CTATTATAAA CAATGCAAAG AATGGAACAT AATAGTATTT
TGTTCATTTT TACTCTATTT CATTGTTTTA CACAAATCCA ATCACAGCTC TATATTTGGC TAAGATATGC CTCCTTGCAG
CTTTAATGGC ACAGTAGTAC TTAGCAAAAC TTTTGGGCAC TTTGTATACA TGGATTGAGG CAAGACAAGA AATATCTAGT
TTGTGCTGCG TATCTTGTTT GAACTATGCT ATGCACACTA TCTACATATT ATTCCAAAAT AGAGATCTCT TTCTGACGTT
TTTTAACTGT TACAGAATCT TTTGTAATTA CTAAATTTTT TATTTTATTG AAGTGTAAGT TATAAATTTG TAAAATGTGG
GTATCCAGTC GTCAAGTTGG CTCTGGTGTT TTATGGGTTG GGGTACTTTT TTTGATATAT TGATATGCAG CTCCCATGGA
TTGATTAAAT GAGTTGCTTC TTTAATTGAG CAGGACCCAA ACAACAAGAA TGTGATCAAC TGTGATGATA AGCTAAAGAG
TATTTTGTTG GGGAAACCTC AGGTTGAGTT AGCAGAACTT CCTGCACTTA TCAAGATGCA CTTTCCAAAA GAGCCCAAAT
GACATCGGTA ATATAATAAA GATGCCTGTT ATCTAGGAAA GTGTAGCCTT CCTCAAGACG AGATTCTGAA TATGTTTCCT
TTTTTTGTCT TTTCCTCCAT ACTGTAACAT CATACGTTTA GGAATCTAGC TTCAGAGCCA CCGAAATTTG CAGTTTTCTT
TATGCTGTAT GGATTGATTA ATCTTTTTAC ATGTGATTCA ACTTAAAATG TCCTGTTTCG CAGCATGCTT TTGCCACTTT
CTAAATTTTG TAATTAAACA GTGACAGTTA GATATTGATT TTGTATGCAA ATATATATTA TGCTTTTATC ATTTATGGCA
AGTCATTTTA CAATTCTTTT TTGAAAA

>Vigan.05G213500.01
AAAAATTAAA ACCCCTTAAA CCTTGTGTGA GTAAAGGTTC TGCTGTGGCA ATGCCCTGCA AACCTCTTTT TTCTCCTCCA
TTGCCATTCA TTTCGTAGCG TCCTTCAAGT TCCAACCACA CTACCCTCTA TTTCTTCGTC AAGCTTCGTG TTTTATCGGT
GCCCAACTCC TTTTAGGCGT TGAATTTCAG GGATTCAAAG CAAAAATGCT CCCTCAGCGC ATGAAGAAAG CCATCACTGA
CAACCCTAAG AAGCTTGCCA ACTTGATTGA CCTCGTCAAC CTTCCATCCA CGCTCAGAGA ATTCGTGGGC CAGTCTCAGA
TTTCCCGTTT GGGTTGTTTC ATGTCGGTTT GGTCCTACAT CAAAGCCAAT AATCTGCAGG ACCCAAACAA CAAGAATGTG
ATCAACTGTG ATGATAAGCT AAAGAGTATT TTGTTGGGGA AACCTCAGGT TGAGTTAGCA GAACTTCCTG CACTTATCAA
GATGCACTTT CCAAAAGAGC CCAAATGACA TCGGTAATAT AATAAAGATG CCTGTTATCT AGGAAAGTGT AGCCTTCCTC
AAGACGAGAT TCTGAATATG TTTCCTTTTT TTGTCTTTTC CTCCATACTG TAACATCATA CGTTTAGGAA TCTAGCTTCA
GAGCCACCGA AATTTGCAGT TTTCTTTATG CTGTATGGAT TGATTAATCT TTTTACATGT GATTCAACTT AAAATGTCCT
GTTTCGCAGC ATGCTTTTGC CACTTTCTAA ATTTTGTAAT TAAACAGTGA CAGTTAGATA TTGATTTTGT ATGCAAATAT
ATATTATGCT TTTATCATTT ATGGCAAGTC ATTTTACAAT TCTTTTTTGA AAA

>Vigan.05G213500.01
ATGCTCCCTC AGCGCATGAA GAAAGCCATC ACTGACAACC CTAAGAAGCT TGCCAACTTG ATTGACCTCG TCAACCTTCC
ATCCACGCTC AGAGAATTCG TGGGCCAGTC TCAGATTTCC CGTTTGGGTT GTTTCATGTC GGTTTGGTCC TACATCAAAG
CCAATAATCT GCAGGACCCA AACAACAAGA ATGTGATCAA CTGTGATGAT AAGCTAAAGA GTATTTTGTT GGGGAAACCT
CAGGTTGAGT TAGCAGAACT TCCTGCACTT ATCAAGATGC ACTTTCCAAA AGAGCCCAAA TGA

>Vigan.05G213500.01
MLPQRMKKAI TDNPKKLANL IDLVNLPSTL REFVGQSQIS RLGCFMSVWS YIKANNLQDP NNKNVINCDD KLKSILLGKP
QVELAELPAL IKMHFPKEPK *