GBrowse Details

Vigan.05G204000.01

Basic Information:
Name: Vigan.05G204000.01
Multiple alignment
Variant Information
Position: Chr05:18764105..18768682 (+ strand)
Length: 4578
Functional Information:
Description: Similar to 30S ribosomal protein S10, chloroplastic-like. [XP_004506689.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S10 (IPR001848)
Ribosomal protein S10, conserved site (IPR018268)
Ribosomal protein S10 domain (IPR027486)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:277.60,160.62,35.23,112.33,12.50,55.35,11.26,21.39
Arabidopsis thaliana homolog: AT3G13120.1
Automatic updates:
Name: NM_001249510 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526953 (LOC100526953), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249563 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306286 (LOC100306286), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:18764105..18764159 (+ strand)
Length: 55
Type: five_prime_UTR
Position: Chr05:18764160..18764405 (+ strand)
Length: 246
Type: CDS
Position: Chr05:18765037..18765096 (+ strand)
Length: 60
Type: CDS
Position: Chr05:18767962..18768273 (+ strand)
Length: 312
Type: CDS
Position: Chr05:18768274..18768682 (+ strand)
Length: 409
Type: three_prime_UTR

>Vigan.05G204000.01 class=Sequence position=Chr05:18764105..18768682 (+ strand)
GAGCTTGACA CGAGTTCGTT CATTCAGAGT GAGATAGAAT TGTTCAAGAG CTACAATGGC GGTTTCTTCT CTCTCTGTTA
CTCCTCTTTC TCTCTCCAAT TCTTCTCCCT CTCTATCTTC CAAGCTAAAG TCTCCATCTT TGTGCCTTTT CTCGGGTAAC
TCCTTGAGGG TCACATGCCC CAAGCCTCTG CAGTCATCAA CTGTGGTTCA TGTTGCTCCG GAAGTGTTGG ATTCTTCCCC
TGATCCCTTG GACCCACCTC CAGAAACCCT TGATGATGAC TCTGAACCCA CCACTTATCA GGTTTGTGGG TGTGTGGTTT
GGTATTTCTT CATTGGGTGA TGTATTACTA GGAGTTTTTC AATTGCTTGA TTAATTGTGT TTCTAGAATG CACTAATTCA
GCTTTTGTTA TTTATCTGTA AAGCAATGTT TATTGTGTTT GTTGATAATT TAAGATTTGG GGAGATAAGA TGAAATGAAT
AATGAACTTT ACGACTATGT TATTGTTTTT GTCTTTTGCA ATGTCATAAC TTGTTTGTTT GGTTGGAGAT TGAGGAAGTA
CAATGGCACT GGGTTTAATG TTATTATGGT TTAGCTTGTG TAGTAGTTTT CCTTACACAT GTTGAGTAGT GCGGAAGGAA
AACGAGGGAG GAAAGTTTGT TTAAATTTAA GAGAAAATGG GTGGGGAAAA AATTTGAATA TTTGTTTGTT CAAGTTGATT
ATTGTTCTCC CCTTGATTTC CACTTTCCCT TTAACTGAAC AAAGGAAACT ACATTGTTAT CTGTTTCATT TCCGCTGTAA
TGTCTTTTCT CCCATTCAAA CAACATATCA TTAATGTTTT GAGCTCATGA GTGAAGTGGG CGGTGGGCGG TTAGATGTTA
GGTGGCATGG TGCAGTTGGT ATCCTTGTTA ATGCAATATT TTGGTGTTTT AGGTTGGTGA ATTGGGGACT CCGAGCACTT
CGGCAATTAG CATTGGCGCT GATGCAGATG CAGTATGTTG TTCAATTCCT CATTTCCAGT TGCTATTTAA TATTTGTTTC
ATTTCGGGGG TTTTCTTTAT CTTGTACATG TAAGGCTCAA ATTTCAAGTG AATTATATCC AGTAAAAATC GTTGAAGAAT
CATAATAAGA AATGATTGGA CATTTTAATT TGTGAATAGT GTTTGGTAAA TCAGGTAAGA GGTTAAATGA GTTGTATTTG
ATGGTAGCCA ATAAGTCAGG AGTGAATATT TGACTCCTCA TAGTCATATG GCATAGTTCC CTGACGATGT GACATGACTC
TCAATATTAT TGTTGACCAG TTATGCTTGT ACTAGACAAT TTTTAAGTTA TAATTTTGGC TGAAATATGT TTCATGAATA
TATTTGAAAG GTTATTAAAA TCACATGATT GCACTTTCCG TAATTTGATG CATAATTTGA TTCAATTCAG CAATGTAGCA
ATTTATATCA TGTGATGAAT CACTTATTGC TTTGAATCGT GTGATAATAC ATAAATTGGT GGGGTTCTGT ATCCCAGGAT
GAATCATGTC TTAGCATCTT TTGATATTTT TAACTTTGTT GCTTTTTATT TTTTACCAAT TCTCATCAGA GAAACTGACA
CCTATAAAGG TATAAATTAT TACATAAAAG TGAAACAAAG GAGTTTTTCT TAATGCACTC TTTTTTATTA TTACATTCTT
CTTCTGATAT AGTGGCTTCA TAAGGTCATT CACTTGCTCT AAACTCCTAT TTGGCTTTCA AGTTCTGTTT TCATCACCTA
GAAACAGAGA CTTCATACAG CCATTCTCAT ACTCCATTCA ATTTATTTAG CTATATCATT GCCTCTTCTT TTTTCTTTCA
AAACATAGTC TTCATGCAAT CACTTACTTT GCCCTAAGGC TAAAAGGAAG GACAAAATGA TGTTTCCTGA GAGCATATTA
TGTTCTTTAA ATAAATTACA CAAATTATAA TTATCATTTT ATAGAAAGTG GATTTTAAGT GTAACTTAAC CTTACAAAAT
CAGCTTATTA GATGAGATTT GCACTCCCTT ATATATCATG ATTTAGTCAT AATATTAGTC AATATGAGAT TTTCAACACA
TTCAATATCC ACAAACAATG TGGAGTAGTT CATTTAGGAT GAACTATCAA TTTGCAGGAA CTCATAAAGA ATCAACACTG
TTGAGTTTCA ATTATGAATT TTTGGCTTGT GTGCTCTAGT ACCATTACAA TTTACTTGTC CATTATGATG TATGCAGTTT
TTTAACGTTT TAAGTGTCGA TGAATCACAT GTACATTCTA AATTGAGAAA AAAGTTACTA TTTACGTTTC AAAAACCAAG
TATTCTCTGT ATAGTTCATG GTTTGACAGC TATGACGATG AATATATGAA TCCATTTCGT ATTCCATGAT ACTTGATGGC
CTATTAGTGC TGTATCCCTC ACCCCTAATT TATCAAAATG GGCCTTGCTC TGCATGATAT AGAGGCCCCA ACAACTTTAG
CTCGAAAAAA TGGCAATCAA GTTCATAGAG GGCCTGGTAA CTATTGGGAA GTTCCATTTT GCCTATCTCA GTGGGTTGTA
ACTAGTATAT ATGTTAGACA ACTTCCTTTA ATGTCTGCTG GTTTTAAGAT GTAATCTTAC AGTAGTGTCC TTAGACTACA
GTCCTAGGAA GTTGTCCAAC TGGTGCAAAT GTTTCTTTCT TGAAGAATGT GGCTAAACGT GGTCTCTGAT ATCTTGTTTG
TCAAATACTG GATTTTCTCT ACAAATTTGT TTTACTTTGT TTTGTTGGAC AGTTGGTTGT TGAATGTAGA GAAAGGTAAA
GGCAATATTA GAACCTGTTA GGCACTCCTA TATGGATATG GAAAAAGAGG GTTTTTCAAT GGCTATTAAA AATTTGTATT
GGTAGCAGCT AATGTAGAAA GAATTTTGTT AGAGGCTCTG TGGAATATAT ATACAGAAAG AAGTAAATGA GTTAGGTTGG
CAATCATTTG GGGTACTCTT GGGATGGCTG TTGCCAATGT TCAAAAATTG CCTCTCTGTT TGGTTGTTTC ATTCTTAATT
CCTATACTTT GTACCTGTTG TTTTAATATG AGCTCTGTTC CCTTAGTAAA TTCTCTATTT GTGTCCACAG TAGATTCAGT
TACCATCAAA ATCACTCTTA TCAACTATCT GTTTTGAACT GTTTTAGTTG TCAAAATGAG GTATTATGAT TTTTTATTTC
ATGATATTGT AATCATGAAT TTTTATAATA AAAAAAAAAT TAAGCTCTCA CTCAGCATGT TCTACTGCAT TTTAACATCA
TGAAACATAC TTTGTGATTC TTTACTGTGA TCACTTTGAT AATATTTATA GTTGAGCATT ATGGAAATAG ATGGTCGCTG
CATTGGAAAC TAATATTCTC GAATCACTGT TCTTGAGGAT GTGTTAAGAA ATCTTCCAAA GTTTATAAAT AGTTTAATTC
TGTACTACAC ATTTCATGTA GTAAAAACCT AAACTTTTTT ACTTTTCGGG ATAAGTAATG TAGCATAGGC TGCTAATAAC
AGTTAGATTA TTAATATTTG CTATGATATT TTCTTGTTCT TCATGGATGA GAGGGGTTTT ATATGGCAAT TCTATTATTT
TGGGCTTTCA ATTAATGTTG AACTAAGCAT GCTGTTAGCT TATTTTTCAT TAGTTCCTTT GTGAAATTAT CTGTAAGTTC
AGTTGAAAGG TGCAAAAGCA ACTCAATGGT ATGAGATTTT GAGTATTAAA CCATTGATTT GTTTTTCTTT ACTCTAACCA
GAAATTAGAA TAAACATTTC ATTCAGATGC CTTTCTTTTT TTATGTACTC TCATAAAATT AAATCCTCTT ATAATATTGT
TTTATTACTA TTCTTAGATG GCACCAAAGC AGAAGATTAG AATCAAGCTT AGATCTTACT GGGTGCCCTT GATTGAGGAT
TCCTGCAAGC AGATATTAGA TGCAGCAAGG ACTACCAATG CAAAAACGAT GGGACCTGTG CCATTGCCAA CCAAGAGGCG
AGTCTACTGT GTTCTTAAAT CCCCTCACGT ACACAAGGAT GCTCGGTTTC ATTTCGAGAT CAGAACTCAC CAGCGTCTCA
TTGATATTCT GTATCCTACT GCTCAAACAA TAGATTCACT TATGCAACTA GATCTTCCTG CTGGTGTTGA TGTTGAGGTC
AAGCTCTAGA GAGATTTTCT TCTTAGGTTG CTAACTATCT TGAATTTGAG GGAAGTTCAA CTTGTTATCA ATAGCCAAAT
ACATTAGTAG ATATCATGTA TTCGCTGCCT GAACTTTACT TGTGTGGACG ATGCAAAATA TTCTTTTGTT TGCTTCACAT
TCTGTCTTCA ACAAGGTTTT CATTTAGTCT ATCCCCGAGT TCCTGTTATT GCACAGATAT GTGTATATCA TATTTAATGT
TATGTAATTC TGATATGTCA CAATGTTTTA TTTTTCCTGT TAAGTTATGC TTAAGAATTT CTTTTGATTG ATTTCAAAAT
TGAATAAGAT GCCGTCCTTG TAGTTTTTAT TAAGGGAAGG AATTGTTGAG GGTGTGTTTG ATTCGAGAGA CCCTTTTCTT
GTTAACTATT TTCACAAA

>Vigan.05G204000.01
GAGCTTGACA CGAGTTCGTT CATTCAGAGT GAGATAGAAT TGTTCAAGAG CTACAATGGC GGTTTCTTCT CTCTCTGTTA
CTCCTCTTTC TCTCTCCAAT TCTTCTCCCT CTCTATCTTC CAAGCTAAAG TCTCCATCTT TGTGCCTTTT CTCGGGTAAC
TCCTTGAGGG TCACATGCCC CAAGCCTCTG CAGTCATCAA CTGTGGTTCA TGTTGCTCCG GAAGTGTTGG ATTCTTCCCC
TGATCCCTTG GACCCACCTC CAGAAACCCT TGATGATGAC TCTGAACCCA CCACTTATCA GGTTGGTGAA TTGGGGACTC
CGAGCACTTC GGCAATTAGC ATTGGCGCTG ATGCAGATGC AATGGCACCA AAGCAGAAGA TTAGAATCAA GCTTAGATCT
TACTGGGTGC CCTTGATTGA GGATTCCTGC AAGCAGATAT TAGATGCAGC AAGGACTACC AATGCAAAAA CGATGGGACC
TGTGCCATTG CCAACCAAGA GGCGAGTCTA CTGTGTTCTT AAATCCCCTC ACGTACACAA GGATGCTCGG TTTCATTTCG
AGATCAGAAC TCACCAGCGT CTCATTGATA TTCTGTATCC TACTGCTCAA ACAATAGATT CACTTATGCA ACTAGATCTT
CCTGCTGGTG TTGATGTTGA GGTCAAGCTC TAGAGAGATT TTCTTCTTAG GTTGCTAACT ATCTTGAATT TGAGGGAAGT
TCAACTTGTT ATCAATAGCC AAATACATTA GTAGATATCA TGTATTCGCT GCCTGAACTT TACTTGTGTG GACGATGCAA
AATATTCTTT TGTTTGCTTC ACATTCTGTC TTCAACAAGG TTTTCATTTA GTCTATCCCC GAGTTCCTGT TATTGCACAG
ATATGTGTAT ATCATATTTA ATGTTATGTA ATTCTGATAT GTCACAATGT TTTATTTTTC CTGTTAAGTT ATGCTTAAGA
ATTTCTTTTG ATTGATTTCA AAATTGAATA AGATGCCGTC CTTGTAGTTT TTATTAAGGG AAGGAATTGT TGAGGGTGTG
TTTGATTCGA GAGACCCTTT TCTTGTTAAC TATTTTCACA AA

>Vigan.05G204000.01
ATGGCGGTTT CTTCTCTCTC TGTTACTCCT CTTTCTCTCT CCAATTCTTC TCCCTCTCTA TCTTCCAAGC TAAAGTCTCC
ATCTTTGTGC CTTTTCTCGG GTAACTCCTT GAGGGTCACA TGCCCCAAGC CTCTGCAGTC ATCAACTGTG GTTCATGTTG
CTCCGGAAGT GTTGGATTCT TCCCCTGATC CCTTGGACCC ACCTCCAGAA ACCCTTGATG ATGACTCTGA ACCCACCACT
TATCAGGTTG GTGAATTGGG GACTCCGAGC ACTTCGGCAA TTAGCATTGG CGCTGATGCA GATGCAATGG CACCAAAGCA
GAAGATTAGA ATCAAGCTTA GATCTTACTG GGTGCCCTTG ATTGAGGATT CCTGCAAGCA GATATTAGAT GCAGCAAGGA
CTACCAATGC AAAAACGATG GGACCTGTGC CATTGCCAAC CAAGAGGCGA GTCTACTGTG TTCTTAAATC CCCTCACGTA
CACAAGGATG CTCGGTTTCA TTTCGAGATC AGAACTCACC AGCGTCTCAT TGATATTCTG TATCCTACTG CTCAAACAAT
AGATTCACTT ATGCAACTAG ATCTTCCTGC TGGTGTTGAT GTTGAGGTCA AGCTCTAG

>Vigan.05G204000.01
MAVSSLSVTP LSLSNSSPSL SSKLKSPSLC LFSGNSLRVT CPKPLQSSTV VHVAPEVLDS SPDPLDPPPE TLDDDSEPTT
YQVGELGTPS TSAISIGADA DAMAPKQKIR IKLRSYWVPL IEDSCKQILD AARTTNAKTM GPVPLPTKRR VYCVLKSPHV
HKDARFHFEI RTHQRLIDIL YPTAQTIDSL MQLDLPAGVD VEVKL*