GBrowse Details

Vigan.05G181700.01

Basic Information:
Name: Vigan.05G181700.01
Multiple alignment
Variant Information
Position: Chr05:15642301..15645231 (+ strand)
Length: 2931
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7BP04, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site (IPR020892)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR024936)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.09,49.57,186.37,74.60,144.15,577.15,109.02,158.05
Arabidopsis thaliana homolog: AT2G29960.1
Automatic updates:
Name: NM_001249146 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP24 (GMCYP24), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Name: NM_001357167 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP34 (GMCYP34), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:15642301..15642394 (+ strand)
Length: 94
Type: five_prime_UTR
Position: Chr05:15642395..15642460 (+ strand)
Length: 66
Type: CDS
Position: Chr05:15642675..15642753 (+ strand)
Length: 79
Type: CDS
Position: Chr05:15643673..15643720 (+ strand)
Length: 48
Type: CDS
Position: Chr05:15643811..15643834 (+ strand)
Length: 24
Type: CDS
Position: Chr05:15644240..15644422 (+ strand)
Length: 183
Type: CDS
Position: Chr05:15644519..15644594 (+ strand)
Length: 76
Type: CDS
Position: Chr05:15644833..15644971 (+ strand)
Length: 139
Type: CDS
Position: Chr05:15644972..15645231 (+ strand)
Length: 260
Type: three_prime_UTR

>Vigan.05G181700.01 class=Sequence position=Chr05:15642301..15645231 (+ strand)
AATAACTAAT GGAATTCCCA TATAAAGCTA CAATCCCCAA CATCATGGTT ACTCACTCAC TGTCGTAGTA GTAGCGGCGA
AACTGAGATC AGAAATGGCG AAAACGACGT TGTTGTTGCT CTGTACGCTG CTCCTCTTCG GAACCCTGGC TCTCACCCAG
GTCCCAATTT TCTTATTCAA TTTTCTTATT TAACTGTGGA GCTTGAGATC GAGACTCTAT TTTATTAGGG GGAAGTCAAT
CTGTATATCA TCTCAATCTA AAATGAAATC CCGGGCCATA GAAATGTTTG AACTGCAATT GAGTTTGACG CCAACTTCAA
TTCTGCTTAC TTTATTTTTT ATTTTGAATT TATTGGTCAA TGTGTGGGTC ACAGGCGAAG AAATCAAAGG AGGAATTGAA
GGAAGTGACG AACAAGGTTT TCTTTGATGT TGAGATCGAT GGAAAAGCTG CAGGTCTCTA AGCTTCCTTC TTTTTATGCC
TTTTATTAAC TCTGTTTGTT GTGTCTGTGT TTTGCTTTCA TTGATTTGAT TCGAAGTGAA ATGAGATGAT AGATGACTAA
AGATACCTTC TAAAATTATA ATTGAGTAAT GTCACACACA CTTTAACACA GATCATTTCC CATGAGCAAA TATTAAACAA
ACTTATTTTA CCAACGATCT ACCTATAATG AAGGAATAGT GATTCATGAT AGGTAAAATA TTGGTTAAAT AAGTTCGATT
AATATTTGAG TTGTGGAAGT GATTTTGGAT GTTTTGGTAA TGTAAGTGAA ACTGGGAGGG TGTGTCTAAT TTTTGCTTGA
TAATGAATCC TTATACTGTA CAAACAAAGT CTCACATCCG ATAAAATATG AAATACACAT GAGTTTATAT ACACATAAGA
TACATCTCTT AGTAAGAAGT CTTTTGAAGT GATATCAAAA TCAAATCCGT GAGTATTTAG CACAAAGCTA GAGTCTAGGG
AGAACTTGGT TGTTTTTAGT GTTATTTTTT TTTGTCCTTG ATCAGGTATA CTCATAGCTA AAGCTGTAAA ATTAGCCGGT
TTAAGTAATA TCCTCCCCGG AATGGCAACT CATTTTACAA GTAAAATTCA CCCGGGGTCA CAATCCACTT GTACTATAGT
TGATATAGAT AAGTGATTCC ACTGTTGTTA GATACACCAT GGCTGTCATG GCAGATTTTT TGCCAACTGC CATAGTATGT
AAAGGGAGGC ACGCTATGTC AGCAAAATAA TATTATTTTA TATGGTGCGA TTTTGTCCTT CCACTATCTA TCATTGATAA
CGCTGAGTTG ATGTTATATC ATTCCTTTTT CCCATAATTT TGAGTATGAA ATTTTGACCG TTTGTATTAT GCTATGATGA
TTGACTTTCC AGGTCGTATT GTAATCGGTC TTTACGGGAA GGCAGTTCCA AAAACTGCAG GTTGGGTTTC TAAATTCTCT
GCATTTTTAT TCTTATCAAT TATCATTTTT AATGTTAACT GAAGCCTTGT TTTTATTTCC GTTTCTGCAG AAAACTTCCG
AGCTCTTTGC ACAGGTGCTC TTGTGTCTGC TGTTTCTATG TTTTGATGTT TATCATATAA TAGTTAGAGA ACTTGTTTCC
ATCCTTTTAT TGAGTTTCAA ATTCAGTCGT GTTAGAATAA ATAGATTCAT TCAATGTTAG AAATGATGAG TAAAAATCCA
GCTGTAATTA GACTGCTCTA CTCATTAGAA CAAATTGAGG ACAGCTTTAA TAGGAAGACA TAGTTGAGTT CTTAGAGTGA
AGGTGGATTG TTCTTTATTC TCGTGGTTCT TTTCACTGAT ATATGAGTTT AATATCATTT CCTCTTCCCT TAATAATATT
ACATAATGAT ATCACTGCTT GGATTTATAA TGTGCACATG TTAGTCTTAC AAATTAAAAT ACATTCTATA TTAAATTTAC
ATTTTTTCCA AATTATTAGG GGAAAAGGGA ATTGGTAAAA ATGGAAAGCC TCTCCATTAC AAAGGTAGCA CATTCCACAG
AATTATTCCT AGCTTTATGA TCCAAGGAGG TGATTTTACA CATGGCAATG GAATGGGCGG AGAATCAATT TACGGAGAGA
AGTTTGCTGA TGAGAACTTC AAGTTAAAGC ATACTGGACC AGGTAATATT CTTGTATTGT TATAGTTGTT TCTTAAACAT
AAATTCAAAC GAACCTATGA TGGGATTAAA GCCTTTTTGT TATTTTATGT ATGAGCAGGT ATTCTGTCAA TGGCAAACGC
AGGTCCTGAT ACCAACGGTT CACAATTTTT CATCACAACT GTGACAACAA GCTGGTAATT TAATCCAGAT CAAAAAGTTC
CTAGAAGAAC ACAAATATCA AAATCTTATG TTGCATATTT CATATTTGTA TTGTGCATAA TGATTTGATT CTGCTGTGAT
TTTATCCATC AATCTGTGAA GAAGGCTGTA TTTGGTGTAA CCATTTGTGC AGATTGTGTA GTGTTACTTA AGATATATAA
ACCAACTCTT TTTTGGTTTT TACTAACTAT TAATGTATTA TGTATTTGAC AGGTTGGACG GAAGGCATGT TGTTTTTGGT
AAAGTTCTTT CTGGAATGGA TGTTGTTTAC AAGGTTGAAG CTGAAGGTAG GCAAAGTGGA ACTCCCAAGA GCAAGGTTGT
GGTTGCTGAC AGCGGTGAAC TTCCTCTATA AAATGTACAC GTCAATTCTC AACCAGGACT TGTTGAAGCT GTTTCCAGTT
TTTTATTCTC TGTACGGACC ACTTGACTTT TCATAAGCAT CTGCTAATAG GTTTATGGTT ATTTCTGTGT GGAACTTAGT
ACATGAAGTT TTCTCCTAAA CTATAAAACG GGAAATAGCA TTTTTGAAGT GAAATTTATG GAGAAAAGTA TGTGAACATG
ACTGTCCAAG ATAAATAGCA TTTCATAATT CGGAGAATCT TAATTTTCCT A

>Vigan.05G181700.01
AATAACTAAT GGAATTCCCA TATAAAGCTA CAATCCCCAA CATCATGGTT ACTCACTCAC TGTCGTAGTA GTAGCGGCGA
AACTGAGATC AGAAATGGCG AAAACGACGT TGTTGTTGCT CTGTACGCTG CTCCTCTTCG GAACCCTGGC TCTCACCCAG
GCGAAGAAAT CAAAGGAGGA ATTGAAGGAA GTGACGAACA AGGTTTTCTT TGATGTTGAG ATCGATGGAA AAGCTGCAGG
TCGTATTGTA ATCGGTCTTT ACGGGAAGGC AGTTCCAAAA ACTGCAGAAA ACTTCCGAGC TCTTTGCACA GGGGAAAAGG
GAATTGGTAA AAATGGAAAG CCTCTCCATT ACAAAGGTAG CACATTCCAC AGAATTATTC CTAGCTTTAT GATCCAAGGA
GGTGATTTTA CACATGGCAA TGGAATGGGC GGAGAATCAA TTTACGGAGA GAAGTTTGCT GATGAGAACT TCAAGTTAAA
GCATACTGGA CCAGGTATTC TGTCAATGGC AAACGCAGGT CCTGATACCA ACGGTTCACA ATTTTTCATC ACAACTGTGA
CAACAAGCTG GTTGGACGGA AGGCATGTTG TTTTTGGTAA AGTTCTTTCT GGAATGGATG TTGTTTACAA GGTTGAAGCT
GAAGGTAGGC AAAGTGGAAC TCCCAAGAGC AAGGTTGTGG TTGCTGACAG CGGTGAACTT CCTCTATAAA ATGTACACGT
CAATTCTCAA CCAGGACTTG TTGAAGCTGT TTCCAGTTTT TTATTCTCTG TACGGACCAC TTGACTTTTC ATAAGCATCT
GCTAATAGGT TTATGGTTAT TTCTGTGTGG AACTTAGTAC ATGAAGTTTT CTCCTAAACT ATAAAACGGG AAATAGCATT
TTTGAAGTGA AATTTATGGA GAAAAGTATG TGAACATGAC TGTCCAAGAT AAATAGCATT TCATAATTCG GAGAATCTTA
ATTTTCCTA

>Vigan.05G181700.01
ATGGCGAAAA CGACGTTGTT GTTGCTCTGT ACGCTGCTCC TCTTCGGAAC CCTGGCTCTC ACCCAGGCGA AGAAATCAAA
GGAGGAATTG AAGGAAGTGA CGAACAAGGT TTTCTTTGAT GTTGAGATCG ATGGAAAAGC TGCAGGTCGT ATTGTAATCG
GTCTTTACGG GAAGGCAGTT CCAAAAACTG CAGAAAACTT CCGAGCTCTT TGCACAGGGG AAAAGGGAAT TGGTAAAAAT
GGAAAGCCTC TCCATTACAA AGGTAGCACA TTCCACAGAA TTATTCCTAG CTTTATGATC CAAGGAGGTG ATTTTACACA
TGGCAATGGA ATGGGCGGAG AATCAATTTA CGGAGAGAAG TTTGCTGATG AGAACTTCAA GTTAAAGCAT ACTGGACCAG
GTATTCTGTC AATGGCAAAC GCAGGTCCTG ATACCAACGG TTCACAATTT TTCATCACAA CTGTGACAAC AAGCTGGTTG
GACGGAAGGC ATGTTGTTTT TGGTAAAGTT CTTTCTGGAA TGGATGTTGT TTACAAGGTT GAAGCTGAAG GTAGGCAAAG
TGGAACTCCC AAGAGCAAGG TTGTGGTTGC TGACAGCGGT GAACTTCCTC TATAA

>Vigan.05G181700.01
MAKTTLLLLC TLLLFGTLAL TQAKKSKEEL KEVTNKVFFD VEIDGKAAGR IVIGLYGKAV PKTAENFRAL CTGEKGIGKN
GKPLHYKGST FHRIIPSFMI QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGILSMAN AGPDTNGSQF FITTVTTSWL
DGRHVVFGKV LSGMDVVYKV EAEGRQSGTP KSKVVVADSG ELPL*