GBrowse Details

Vigan.05G171200.01

Basic Information:
Name: Vigan.05G171200.01
Multiple alignment
Variant Information
Position: Chr05:14465141..14466787 (+ strand)
Length: 1647
Functional Information:
Description: Similar to Uncharacterized protein. [I1MZT2, Glycine max]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: peroxidase activity (GO:0004601)
Molecular Function: heme binding (GO:0020037)
InterPro: Plant peroxidase (IPR000823)
Haem peroxidase, plant/fungal/bacterial (IPR002016)
Haem peroxidase (IPR010255)
Peroxidases heam-ligand binding site (IPR019793)
Peroxidase, active site (IPR019794)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.02,0.00,9.00,0.49,29.73,0.00
Automatic updates:
Name: NM_001254314 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxidase 4-like (LOC100816056), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255467 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RIP1-like peroxidase (RIP1), mRNA.
PubMed ID: 25973713 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:14465141..14465168 (+ strand)
Length: 28
Type: five_prime_UTR
Position: Chr05:14465169..14465384 (+ strand)
Length: 216
Type: CDS
Position: Chr05:14465523..14465717 (+ strand)
Length: 195
Type: CDS
Position: Chr05:14465910..14466470 (+ strand)
Length: 561
Type: CDS
Position: Chr05:14466471..14466787 (+ strand)
Length: 317
Type: three_prime_UTR

>Vigan.05G171200.01 class=Sequence position=Chr05:14465141..14466787 (+ strand)
GTTCAAAGCA GGGTAAGAGC ACAACACGAT GGCTTCTATT ATCCAATCCC TGCTTGTGCT TGTTCTAGCC ACTTTCGCCA
CATTTATGGT CCCTTCCAAT GCACATCTCA GTGCTAATTT CTATGACAAA GTTTGTCCCA AGGCATTACC AATCATAAGA
TCAGTTGTTG AGCGAGCAAT TATTCGTGAA CGACGCATTG GAGCATCACT GCTGCGTCTG CATTTCCATG ACTGCTTTGT
TAATGTAAGC TATCAATTAC TGTGTTATAT TACTTTCAGG TTTTCATGCC ATAAACTTAG ACACAGCATT GTGCCCTAGT
TTTCTATGTT TACTTTGCTG ATCAAAGTTG AAAACTTCGT TATTACTTTG TATTATGCAC AGGGATGTGA TGGATCAGTT
CTGTTAGATG ACACAAGGAA CTTCACTGGC GAGAAAACAG CCCTACCAAA TCTCAACTCC ATAAGAGGGT TTGAAGTGGT
TGATGAGATT AAGGCAGCAG TTGACAACGC TTGCAATGGC CATGTCGTTT CATGTGCTGA TATCTTAGCA ACAGCTGCTC
GAGATTCTGT GGCCATCGTA AGCATATATT ATAGTTAATT AATTATTTTC AATTATCATA TACAATATTA CTAAATACTC
TTTTTTTCTC TCTAGGTTAA CAGTATCTAC CAATTCTTTT CAACTTCTGG AATAAAAAAG TAGTTTATAG TTCATTGATG
GTTTATATTG AGCTCTTAAA AAGTATCAAA TTTTGTGTTG CTATAACAGT TGGGAGGTCA AAACCTATGG TACTCAGTAT
TACTAGGCAG AAGAGACGCC AGAACTGCAA GCAAAGATGC TGCAAACACC AACCTTCCCG CTCCATTTTT CAGCTTCTCA
CAGCTTCTCA GCAGTTTCAA GTCTCACGGA ATGAACCTCA AGGACTTAGT GGCACTCTCT GGTGGTCACA CCATAGGGTT
TGCAAGGTGC ACCACCTTCA GAGACCGCAT CTACAACGAC ACCAACATCA ACCCTACCTT TGCAGCCTAT TTGCGCAGAA
CATGCCCTAG AGTTGGTGGT GATAGCAACT TGGCTCAATT GGACCCAACC CCTGCAAATG TTGACACTTC ATACTTCAAG
GAATTGCTCT GCAAAAAGGG TCTCCTTCAC TCTGACCAAG AACTCTACAA GGGGGGTGGC AGTGAAAGTG ACAAGCTGGT
GAAGCTTTAT AGCACGAACC CTTTTGCATT TGCTAACGAT TTTAAGGCTT CCATGATCAA GATGGGAAAT TTGAAGCCTC
TCACCGGCAG AAAGGGAGAG ATCAGACGCA ATTGCAGAAG TGTTAACTAA TGCTGCATCC ATCTTTCTAT GGACCACAAT
AAAGATTCAA AGATTGAGAA ATTGTTATTA TTTTATTATT ATAATATGTC ACGCATGTGT GTTTTTAAAC TGTCTGTGAT
TATGTTTTTT ATGTTTTTGT TAAGATTAAC GTGTTAGGTT CAAAGATTTG AACCATAAAG AAACCTTCTA AAGATAAAGG
TCGCTGTAAG ACGGTGACTA TGCAACAATT TGTACTTTCT GAATTCGTGC AGAGTGAATC ACCGCAAGAT TTTTAAAATT
TTGCTATTCG ATCCAAATAA AATAATTGAA GTTGACTTGC TGAAAAT

>Vigan.05G171200.01
GTTCAAAGCA GGGTAAGAGC ACAACACGAT GGCTTCTATT ATCCAATCCC TGCTTGTGCT TGTTCTAGCC ACTTTCGCCA
CATTTATGGT CCCTTCCAAT GCACATCTCA GTGCTAATTT CTATGACAAA GTTTGTCCCA AGGCATTACC AATCATAAGA
TCAGTTGTTG AGCGAGCAAT TATTCGTGAA CGACGCATTG GAGCATCACT GCTGCGTCTG CATTTCCATG ACTGCTTTGT
TAATGGATGT GATGGATCAG TTCTGTTAGA TGACACAAGG AACTTCACTG GCGAGAAAAC AGCCCTACCA AATCTCAACT
CCATAAGAGG GTTTGAAGTG GTTGATGAGA TTAAGGCAGC AGTTGACAAC GCTTGCAATG GCCATGTCGT TTCATGTGCT
GATATCTTAG CAACAGCTGC TCGAGATTCT GTGGCCATCT TGGGAGGTCA AAACCTATGG TACTCAGTAT TACTAGGCAG
AAGAGACGCC AGAACTGCAA GCAAAGATGC TGCAAACACC AACCTTCCCG CTCCATTTTT CAGCTTCTCA CAGCTTCTCA
GCAGTTTCAA GTCTCACGGA ATGAACCTCA AGGACTTAGT GGCACTCTCT GGTGGTCACA CCATAGGGTT TGCAAGGTGC
ACCACCTTCA GAGACCGCAT CTACAACGAC ACCAACATCA ACCCTACCTT TGCAGCCTAT TTGCGCAGAA CATGCCCTAG
AGTTGGTGGT GATAGCAACT TGGCTCAATT GGACCCAACC CCTGCAAATG TTGACACTTC ATACTTCAAG GAATTGCTCT
GCAAAAAGGG TCTCCTTCAC TCTGACCAAG AACTCTACAA GGGGGGTGGC AGTGAAAGTG ACAAGCTGGT GAAGCTTTAT
AGCACGAACC CTTTTGCATT TGCTAACGAT TTTAAGGCTT CCATGATCAA GATGGGAAAT TTGAAGCCTC TCACCGGCAG
AAAGGGAGAG ATCAGACGCA ATTGCAGAAG TGTTAACTAA TGCTGCATCC ATCTTTCTAT GGACCACAAT AAAGATTCAA
AGATTGAGAA ATTGTTATTA TTTTATTATT ATAATATGTC ACGCATGTGT GTTTTTAAAC TGTCTGTGAT TATGTTTTTT
ATGTTTTTGT TAAGATTAAC GTGTTAGGTT CAAAGATTTG AACCATAAAG AAACCTTCTA AAGATAAAGG TCGCTGTAAG
ACGGTGACTA TGCAACAATT TGTACTTTCT GAATTCGTGC AGAGTGAATC ACCGCAAGAT TTTTAAAATT TTGCTATTCG
ATCCAAATAA AATAATTGAA GTTGACTTGC TGAAAAT

>Vigan.05G171200.01
ATGGCTTCTA TTATCCAATC CCTGCTTGTG CTTGTTCTAG CCACTTTCGC CACATTTATG GTCCCTTCCA ATGCACATCT
CAGTGCTAAT TTCTATGACA AAGTTTGTCC CAAGGCATTA CCAATCATAA GATCAGTTGT TGAGCGAGCA ATTATTCGTG
AACGACGCAT TGGAGCATCA CTGCTGCGTC TGCATTTCCA TGACTGCTTT GTTAATGGAT GTGATGGATC AGTTCTGTTA
GATGACACAA GGAACTTCAC TGGCGAGAAA ACAGCCCTAC CAAATCTCAA CTCCATAAGA GGGTTTGAAG TGGTTGATGA
GATTAAGGCA GCAGTTGACA ACGCTTGCAA TGGCCATGTC GTTTCATGTG CTGATATCTT AGCAACAGCT GCTCGAGATT
CTGTGGCCAT CTTGGGAGGT CAAAACCTAT GGTACTCAGT ATTACTAGGC AGAAGAGACG CCAGAACTGC AAGCAAAGAT
GCTGCAAACA CCAACCTTCC CGCTCCATTT TTCAGCTTCT CACAGCTTCT CAGCAGTTTC AAGTCTCACG GAATGAACCT
CAAGGACTTA GTGGCACTCT CTGGTGGTCA CACCATAGGG TTTGCAAGGT GCACCACCTT CAGAGACCGC ATCTACAACG
ACACCAACAT CAACCCTACC TTTGCAGCCT ATTTGCGCAG AACATGCCCT AGAGTTGGTG GTGATAGCAA CTTGGCTCAA
TTGGACCCAA CCCCTGCAAA TGTTGACACT TCATACTTCA AGGAATTGCT CTGCAAAAAG GGTCTCCTTC ACTCTGACCA
AGAACTCTAC AAGGGGGGTG GCAGTGAAAG TGACAAGCTG GTGAAGCTTT ATAGCACGAA CCCTTTTGCA TTTGCTAACG
ATTTTAAGGC TTCCATGATC AAGATGGGAA ATTTGAAGCC TCTCACCGGC AGAAAGGGAG AGATCAGACG CAATTGCAGA
AGTGTTAACT AA

>Vigan.05G171200.01
MASIIQSLLV LVLATFATFM VPSNAHLSAN FYDKVCPKAL PIIRSVVERA IIRERRIGAS LLRLHFHDCF VNGCDGSVLL
DDTRNFTGEK TALPNLNSIR GFEVVDEIKA AVDNACNGHV VSCADILATA ARDSVAILGG QNLWYSVLLG RRDARTASKD
AANTNLPAPF FSFSQLLSSF KSHGMNLKDL VALSGGHTIG FARCTTFRDR IYNDTNINPT FAAYLRRTCP RVGGDSNLAQ
LDPTPANVDT SYFKELLCKK GLLHSDQELY KGGGSESDKL VKLYSTNPFA FANDFKASMI KMGNLKPLTG RKGEIRRNCR
SVN*