GBrowse Details

Vigan.05G170000.01

Basic Information:
Name: Vigan.05G170000.01
Multiple alignment
Variant Information
Position: Chr05:14278971..14281511 (+ strand)
Length: 2541
Functional Information:
Description: Similar to expansin-A8. [XP_003538280.1, Glycine max]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.55,1.64,163.88,100.35,6.42,3.32,10.62,116.62
Automatic updates:
Name: BT090385 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-4I6 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255290 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-A8-like (LOC100777044), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317416 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-A4 (LOC100499976), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:14278971..14279280 (+ strand)
Length: 310
Type: five_prime_UTR
Position: Chr05:14279281..14279410 (+ strand)
Length: 130
Type: CDS
Position: Chr05:14280117..14280429 (+ strand)
Length: 313
Type: CDS
Position: Chr05:14280961..14281264 (+ strand)
Length: 304
Type: CDS
Position: Chr05:14281265..14281511 (+ strand)
Length: 247
Type: three_prime_UTR

>Vigan.05G170000.01 class=Sequence position=Chr05:14278971..14281511 (+ strand)
TTATTGGTCT ATAAAGTTGG GGAGAAAAGA TAGTTGGGGT TGCATGTGCA GAGGTGTGGC CCACAATATT AGCGGTTGGG
AACCCCAACC AGAACCAGCG CATGTGCACT TCATTTGTCA CTTGTTCAGT GGCTTTCGGG AAAAATAACA CTTTTGTGGA
AGTTAGTAAT AAGAGAAAAG AAAAAAGTAA AAAGATGTTA CTTATAAATA GAGGCCCCCC TTGAAGCACT TGACCTCACA
GCATAGCAAA AGAAAGTGCA CATTCCTCTG TTTTGCTCCC CTGTTTAGGC CTTATCATAA GCTCACAATC ATGCCTCTTC
TCACTCTCAT TGCTGTTCTC TTTCTTAACA TCAATCTCCA AGGTGTTACT GCTGACTATG GTGGTTGGCA GGGTGGTCAT
GCCACTTTCT ATGGTGGGGG TGATGCTTCT GGCACAATGG GTGAGTTTAG CCTACTTCTT CATATATGTA TTTATCTTTT
TTCTCTTTTT GTGACATCAT ACCATATATT ATGTCTACAA TTATTTACTT TTCTCCATAA TTATCAACTA GTATGGATGT
TCATGCATAT TTGCTGTTTT GATTTCGAAT GCTAAAGAGA ATGGAATAAA ATGAATGAAA AGAAATCAAG TAGATGAAAT
GAAGTTCTGA CATTGCTGTG ATAAAATAAA AATAAAAAAT AAAAAAGTGG TTTTGTCTTA CACTTTTAAA TTGCATGAAA
GTATTGCCTC AAATTCTATT CCATGCATCT TACTTTAAAA AAGGCAAAAA CACTGAAATC TATTGTCATT TTATTACATT
TCACTCTATT CTATTTCTTT TCATGGACCC GAATATTGGA ATAGTGAAAC TGTACACATA TTTTGAGCAA AGCCCGTTTT
TTTACTTAAG CTACTTCTTT AGCACTTTTT TGATGTGCCA TGTTACCATT TACTCTTGCC GACACTAGCA ATAGCAACAC
ATTCATAACT AATGCTATAA TGTGCAAAAC ATGAAAACGT TGTCACATGA CAGATTTCAG TTATGTGAAA TTCCTTGAAA
CACTACTCTT TTTAACATGA TCAAGAAACT CCTTTTAATT ACTATCATTA CTGTTATATT GAAAGTTGAG ATGATGGGGT
TTATACTTTT TATTTTATAC ATGTAGGTGG AGCATGTGGG TATGGAAATC TGTATAGCCA GGGTTATGGA ACAGACACTG
TGGCTCTAAG CACTGCTTTG TTCAACAATG GCTTAAGCTG TGGATCTTGC TATGAAATGA GATGTGATGA TGACCCAAGA
TGGTGCAAAC CTGGCTCTAT TATCGTCACT GCTACTAACT TCTGTCCCCC AAATCCATCT TTGCCAAACA ACAATGGTGG
TTGGTGCAAC CCACCTCTGC AACACTTTGA TATGGCTGAA CCTGCCTTCC TTCAGATTGC AGAATATAGA GCTGGAATTG
TCCCAGTGGC CTTCAGAAGG TAAATGAAGC CATAAATTTG ACAATGCTTT CAAGCTTAAA GGTCACATTT AATTCCTTAA
CAACTATATT ACCTAATTTA TGAATTTATG AATTTATTAA ATGTTGAAAA TGAATTACTC TCTCATTAAA AAGTCACATA
AAGGTATAAC ACTTATTTTC ATTTTAGTAA ATGGCCCTTA TTCATGAACG TGTGAAAATT GGTGTAGCCA TTAACAAACC
TCAACTTCTA GCTTTCATGT CAAACTGATC TCAAATTGAA AAGACTTGAA TAACATAATT ACCTTTATCT ATGCTAACCA
TATTTCTTAA GCTTATAAAG TGAGTAAAGA CAAAACTAGT AATTTCAGAT GCTGATGAAA AACTCAAACA GCTGGTATTC
AAACACATTC ATGATTTGTT CATGCAGTTA ATTTTCTTAT CTATGACTGA TATTGCTTAC TTTATCCTGT ATGATGTTTA
TGGTTCAATT GGTCATATGT TTAACTAGTG CTAAACTAAA GTATACTGCA AATTTGGGTG ATGATGGCAG GGTTCCTTGT
GTGAAGAAGG GAGGAATAAG GTTCACTATC AATGGTCACT CTTACTTCAA CCTAGTTTTG GTCACCAATG TGGCTGGTGC
TGGGGATGTG CATTCAGTGT CCATCAAAGG GTCCAAAACT GGGTGGCAAC CCATGTCAAG AAATTGGGGC CAAAACTGGC
AGAGCAACTC CTACCTGAAT GGACAAGCCC TTTCTTTTCA AGTCACCACC AGTGATGGCA GAACTGTGGC AAGCTACAAT
GTGGCACCAG GCAATTGGCA ATTTGGGCAG ACCTTCCAAG GAGGCCAATT CTAGAGACCT TATTGCAATG AGGGTAGAAA
ACAGTACAAA AAAAAGTTTG TATACCTACT ATTGTTCACC TCACTGGAAC AACCATAAAA TGTCATAATA GGTATTGATC
AATTCTTGTA ACTGATTCTG AAAGGCCAGT GTTTTATTTT ATTGGTCTAG AAAGTAGCTG AGGTGTTTAT ATGGCACCCG
CTGGTCACTT CACATATAAC ATACATATAT GGAGAGAGAG TTATGTATTA TCTTGTGTGT T

>Vigan.05G170000.01
TTATTGGTCT ATAAAGTTGG GGAGAAAAGA TAGTTGGGGT TGCATGTGCA GAGGTGTGGC CCACAATATT AGCGGTTGGG
AACCCCAACC AGAACCAGCG CATGTGCACT TCATTTGTCA CTTGTTCAGT GGCTTTCGGG AAAAATAACA CTTTTGTGGA
AGTTAGTAAT AAGAGAAAAG AAAAAAGTAA AAAGATGTTA CTTATAAATA GAGGCCCCCC TTGAAGCACT TGACCTCACA
GCATAGCAAA AGAAAGTGCA CATTCCTCTG TTTTGCTCCC CTGTTTAGGC CTTATCATAA GCTCACAATC ATGCCTCTTC
TCACTCTCAT TGCTGTTCTC TTTCTTAACA TCAATCTCCA AGGTGTTACT GCTGACTATG GTGGTTGGCA GGGTGGTCAT
GCCACTTTCT ATGGTGGGGG TGATGCTTCT GGCACAATGG GTGGAGCATG TGGGTATGGA AATCTGTATA GCCAGGGTTA
TGGAACAGAC ACTGTGGCTC TAAGCACTGC TTTGTTCAAC AATGGCTTAA GCTGTGGATC TTGCTATGAA ATGAGATGTG
ATGATGACCC AAGATGGTGC AAACCTGGCT CTATTATCGT CACTGCTACT AACTTCTGTC CCCCAAATCC ATCTTTGCCA
AACAACAATG GTGGTTGGTG CAACCCACCT CTGCAACACT TTGATATGGC TGAACCTGCC TTCCTTCAGA TTGCAGAATA
TAGAGCTGGA ATTGTCCCAG TGGCCTTCAG AAGGGTTCCT TGTGTGAAGA AGGGAGGAAT AAGGTTCACT ATCAATGGTC
ACTCTTACTT CAACCTAGTT TTGGTCACCA ATGTGGCTGG TGCTGGGGAT GTGCATTCAG TGTCCATCAA AGGGTCCAAA
ACTGGGTGGC AACCCATGTC AAGAAATTGG GGCCAAAACT GGCAGAGCAA CTCCTACCTG AATGGACAAG CCCTTTCTTT
TCAAGTCACC ACCAGTGATG GCAGAACTGT GGCAAGCTAC AATGTGGCAC CAGGCAATTG GCAATTTGGG CAGACCTTCC
AAGGAGGCCA ATTCTAGAGA CCTTATTGCA ATGAGGGTAG AAAACAGTAC AAAAAAAAGT TTGTATACCT ACTATTGTTC
ACCTCACTGG AACAACCATA AAATGTCATA ATAGGTATTG ATCAATTCTT GTAACTGATT CTGAAAGGCC AGTGTTTTAT
TTTATTGGTC TAGAAAGTAG CTGAGGTGTT TATATGGCAC CCGCTGGTCA CTTCACATAT AACATACATA TATGGAGAGA
GAGTTATGTA TTATCTTGTG TGTT

>Vigan.05G170000.01
ATGCCTCTTC TCACTCTCAT TGCTGTTCTC TTTCTTAACA TCAATCTCCA AGGTGTTACT GCTGACTATG GTGGTTGGCA
GGGTGGTCAT GCCACTTTCT ATGGTGGGGG TGATGCTTCT GGCACAATGG GTGGAGCATG TGGGTATGGA AATCTGTATA
GCCAGGGTTA TGGAACAGAC ACTGTGGCTC TAAGCACTGC TTTGTTCAAC AATGGCTTAA GCTGTGGATC TTGCTATGAA
ATGAGATGTG ATGATGACCC AAGATGGTGC AAACCTGGCT CTATTATCGT CACTGCTACT AACTTCTGTC CCCCAAATCC
ATCTTTGCCA AACAACAATG GTGGTTGGTG CAACCCACCT CTGCAACACT TTGATATGGC TGAACCTGCC TTCCTTCAGA
TTGCAGAATA TAGAGCTGGA ATTGTCCCAG TGGCCTTCAG AAGGGTTCCT TGTGTGAAGA AGGGAGGAAT AAGGTTCACT
ATCAATGGTC ACTCTTACTT CAACCTAGTT TTGGTCACCA ATGTGGCTGG TGCTGGGGAT GTGCATTCAG TGTCCATCAA
AGGGTCCAAA ACTGGGTGGC AACCCATGTC AAGAAATTGG GGCCAAAACT GGCAGAGCAA CTCCTACCTG AATGGACAAG
CCCTTTCTTT TCAAGTCACC ACCAGTGATG GCAGAACTGT GGCAAGCTAC AATGTGGCAC CAGGCAATTG GCAATTTGGG
CAGACCTTCC AAGGAGGCCA ATTCTAG

>Vigan.05G170000.01
MPLLTLIAVL FLNINLQGVT ADYGGWQGGH ATFYGGGDAS GTMGGACGYG NLYSQGYGTD TVALSTALFN NGLSCGSCYE
MRCDDDPRWC KPGSIIVTAT NFCPPNPSLP NNNGGWCNPP LQHFDMAEPA FLQIAEYRAG IVPVAFRRVP CVKKGGIRFT
INGHSYFNLV LVTNVAGAGD VHSVSIKGSK TGWQPMSRNW GQNWQSNSYL NGQALSFQVT TSDGRTVASY NVAPGNWQFG
QTFQGGQF*