VIGGS:GBrowse

Vigan.05G159200.01

Basic Information:

Name:	Vigan.05G159200.01 Multiple alignment Variant Information
Position:	Chr05:13119694..13121902 (+ strand)
Length:	2209

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MZJ4, Glycine max]
InterPro:	Uncharacterised protein family UPF0497, trans-membrane plant subgroup (IPR006459)
InterPro:	Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:9.28,24.40,78.03,19.66,0.00,43.76,0.03,9.13
Arabidopsis thaliana homolog:	AT1G17200.1

Automatic updates:

Name:	NM_001252838 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max CASP-like protein 10-like (LOC100790042), mRNA.
PubMed ID:	14624337 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:13119694..13119825 (+ strand)
Length:	132
Type:	five_prime_UTR

Position:	Chr05:13119826..13120040 (+ strand)
Length:	215
Type:	CDS

Position:	Chr05:13120833..13120950 (+ strand)
Length:	118
Type:	CDS

Position:	Chr05:13121473..13121748 (+ strand)
Length:	276
Type:	CDS

Position:	Chr05:13121749..13121902 (+ strand)
Length:	154
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.05G159200.01 class=Sequence position=Chr05:13119694..13121902 (+ strand)
CTCCACTCTT TCCTTTAATG CCCTACATGC CTACCCTATC ACCACTACCA ACTAGTATAA CATACTCTTC AAAACCTACC
AACACACATA AAAACAAAGC TTTTGTTCAT AAGAAATAGT ATACAAACAA GGATGGAGAA AACAAATGTT GTGGAAGGTT
CAAGATCTCC CATGCAGATG AAGATGGGAG ATGAGTTGGA AGGCAACACC AACACCCTTC GCACTGCCGA AACCTTCCTG
CGGTTGCTTC CTGTTGCTCT TTGTGTTTCT GCACTTGTTC TCATGCTTAA GAACTCTCAG CAAAATCAAT ATGGTTCTGT
TGATTACACT GACCTTGGAG CTTTCAAGTA TGTATATGTT ACCAAGTACA GGAAATATAT GTCCTTTTTC TTCAAGTTCT
TAGAATGCTT TTTAACATAT AAGAGATTAA GGGAGACACA AATAAGATGA AATAATGGTA TACTTGCTGT GAAACTGTTT
GCATCTCCTA ACTCTGTCCC TACTGTTGCA TTGATCATCA ATTTTATTCT CAGAATTGCC AATTAATCAA TCTGTTAAGG
ATTAAAAGTA CAGATTAATT AATTCTTTAT CAGGGGCACT TCTTTAAAGT TAGTCCTTCA ACTCTCTAAC TATGTTTTGA
AATCGGACTA CAGTGTTGTA TCAGTGAAGA TGCTGATTCA AACTAGGTTT ATTCATTGAT TCAACTTTTA ACTAAATTGT
AAATCGATCT GATATTCATA CGATAATGTT AATAATTATG TATAGAATAA TATAAAAAAA TGTAATACCT TAATCTAATA
GTACTAAAAA AAATAACACA TTTAATAGGT TTTAATATAT TCAAAATACT CATAAAAATA AAATATTGGT AGACATTTTC
TAATAATATA TATACCGATA GATTAGTTAG AAACACTCAT GTTTGGATAG TTGATTTTTG AGCTCAGATT GTGTAAGATG
AATCTAAATT AGTTTTGGTT TTAGGCTCAA ATATTGAAAC TGCTATAATG TTAACATACA AAATAACCCT TATTAATGTT
GTGCATATTA GTTATTGTGA AATTTTTAGA TCTGAATCAG AATATATACG AAAAGGATGA CAAAGATTCA TATTGGTTGA
TGGGTTTTTT ATATTGCAGG TATCTGGTGC ATGCGAATGG CATTTGTGCA GGTTACTCTC TATTTTCAGC TGTTATTGCT
GCTATGCCAC GACCTTCTAC TATGCCTCGT GCTTGGACTT TCTTTTTGCT TGATCAGGTC ATCACATCTC ACTCATTCTT
AATTTCTTCC TGCAATAAAG TGTTAAGAGA TTATAAATGC TCCAAATAAT GATGGTCAAA TAGAACTAGA TGGAATATCT
CTGCCACCAC AATAACAAAG GATGTGATTG TGGTCGTGGC TTCATCAACA ATGGTGCTGT TATTTGACAC TCTTTTAACT
TCTGTAAATA TTCTCAGCAT TGCTTCAGTT TAAGTGGCAC CAGTAATCCA AGCCTGTGAA TAAAAAAGTA CAGATAAGGA
TTAAATTTAA GCTTTCAAAA TGAAGTTCAA ACTTATGAAA AAGCAATATT TGTAGCCTAA ACCAGAATCA AAATGAAAAA
GCTTTCAAAA TGAACCAATC CTTCTCAATT TTCGATTTAA GCCAACCTAT TTCAAACTTT AGTCCGTTAA AGTTAGAATC
AACTTTCCCG GATCGTTTAA ACTTTTGGAC TGGGTTTATG ATGTTAATCC TATTGTTAAC TATGCATATA CTGAAAACGT
TTTGAATTTG CATTGGTAGG TGCTAACATA CATAGTTCTA GCTGCTGGAG CAGTGTCAAC TGAGGTTTTG TACCTAGCTG
AGAATGGCAA CACTGCCACA ACATGGAGCT CAGCTTGTGG ATCATTTGGT CGATTCTGTA ACAAGGTGAC AGCATCAATT
ACGATCACAT TTGTGGCAGT GCTTTGCTAT GTGTTGCTTT CTCTCATTTC CTCTTACAAG CTGTTCACCA AGTATGATGC
ACCAGCAGCA TGCAGACCAA CTTCACCCAT TGAGGTTGCT GCTTTCCCTG GCTAAATCAA CCCTTATGTA TAACAATGTG
CTTCATGCAT GTGTCTGCTT AATTACTTCC AATCAATAAT GTAATGACAT GCTCTTGTGT TAATTAGGAC CTTAATTGTG
AGTTTATAAT TAATATATAA CCTTTGACCT CCTTAACACT ATGCATCTG

[show][hide][copy]TRANSCRIPT

>Vigan.05G159200.01
CTCCACTCTT TCCTTTAATG CCCTACATGC CTACCCTATC ACCACTACCA ACTAGTATAA CATACTCTTC AAAACCTACC
AACACACATA AAAACAAAGC TTTTGTTCAT AAGAAATAGT ATACAAACAA GGATGGAGAA AACAAATGTT GTGGAAGGTT
CAAGATCTCC CATGCAGATG AAGATGGGAG ATGAGTTGGA AGGCAACACC AACACCCTTC GCACTGCCGA AACCTTCCTG
CGGTTGCTTC CTGTTGCTCT TTGTGTTTCT GCACTTGTTC TCATGCTTAA GAACTCTCAG CAAAATCAAT ATGGTTCTGT
TGATTACACT GACCTTGGAG CTTTCAAGTA TCTGGTGCAT GCGAATGGCA TTTGTGCAGG TTACTCTCTA TTTTCAGCTG
TTATTGCTGC TATGCCACGA CCTTCTACTA TGCCTCGTGC TTGGACTTTC TTTTTGCTTG ATCAGGTGCT AACATACATA
GTTCTAGCTG CTGGAGCAGT GTCAACTGAG GTTTTGTACC TAGCTGAGAA TGGCAACACT GCCACAACAT GGAGCTCAGC
TTGTGGATCA TTTGGTCGAT TCTGTAACAA GGTGACAGCA TCAATTACGA TCACATTTGT GGCAGTGCTT TGCTATGTGT
TGCTTTCTCT CATTTCCTCT TACAAGCTGT TCACCAAGTA TGATGCACCA GCAGCATGCA GACCAACTTC ACCCATTGAG
GTTGCTGCTT TCCCTGGCTA AATCAACCCT TATGTATAAC AATGTGCTTC ATGCATGTGT CTGCTTAATT ACTTCCAATC
AATAATGTAA TGACATGCTC TTGTGTTAAT TAGGACCTTA ATTGTGAGTT TATAATTAAT ATATAACCTT TGACCTCCTT
AACACTATGC ATCTG

[show][hide][copy]CDS

>Vigan.05G159200.01
ATGGAGAAAA CAAATGTTGT GGAAGGTTCA AGATCTCCCA TGCAGATGAA GATGGGAGAT GAGTTGGAAG GCAACACCAA
CACCCTTCGC ACTGCCGAAA CCTTCCTGCG GTTGCTTCCT GTTGCTCTTT GTGTTTCTGC ACTTGTTCTC ATGCTTAAGA
ACTCTCAGCA AAATCAATAT GGTTCTGTTG ATTACACTGA CCTTGGAGCT TTCAAGTATC TGGTGCATGC GAATGGCATT
TGTGCAGGTT ACTCTCTATT TTCAGCTGTT ATTGCTGCTA TGCCACGACC TTCTACTATG CCTCGTGCTT GGACTTTCTT
TTTGCTTGAT CAGGTGCTAA CATACATAGT TCTAGCTGCT GGAGCAGTGT CAACTGAGGT TTTGTACCTA GCTGAGAATG
GCAACACTGC CACAACATGG AGCTCAGCTT GTGGATCATT TGGTCGATTC TGTAACAAGG TGACAGCATC AATTACGATC
ACATTTGTGG CAGTGCTTTG CTATGTGTTG CTTTCTCTCA TTTCCTCTTA CAAGCTGTTC ACCAAGTATG ATGCACCAGC
AGCATGCAGA CCAACTTCAC CCATTGAGGT TGCTGCTTTC CCTGGCTAA

[show][hide][copy]PROTEIN

>Vigan.05G159200.01
MEKTNVVEGS RSPMQMKMGD ELEGNTNTLR TAETFLRLLP VALCVSALVL MLKNSQQNQY GSVDYTDLGA FKYLVHANGI
CAGYSLFSAV IAAMPRPSTM PRAWTFFLLD QVLTYIVLAA GAVSTEVLYL AENGNTATTW SSACGSFGRF CNKVTASITI
TFVAVLCYVL LSLISSYKLF TKYDAPAACR PTSPIEVAAF PG*