GBrowse Details

Vigan.05G154800.01

Basic Information:
Name: Vigan.05G154800.01
Multiple alignment
Variant Information
Position: Chr05:12717582..12719248 (+ strand)
Length: 1667
Functional Information:
Description: Similar to Uncharacterized protein. [I1NJ23, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L22e (IPR002671)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:133.24,179.89,60.41,32.96,88.06,167.65,87.19,43.71
Automatic updates:
Name: NM_001248047 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499714 (LOC100499714), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250110 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305556 (LOC100305556), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001349782 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 60S ribosomal protein L22-2 (LOC100499952), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:12717582..12717957 (+ strand)
Length: 376
Type: five_prime_UTR
Position: Chr05:12717958..12718187 (+ strand)
Length: 230
Type: CDS
Position: Chr05:12718668..12718812 (+ strand)
Length: 145
Type: CDS
Position: Chr05:12718813..12719248 (+ strand)
Length: 436
Type: three_prime_UTR

>Vigan.05G154800.01 class=Sequence position=Chr05:12717582..12719248 (+ strand)
AAAAAACATA AAACGCAGGT CTGGATCCAT CATATAAAAA CTGAAATCCA AACCCTAAAT ATCCACTGCG GTTCTCATCT
CTTCCCAATC CTAACCTCAC CGCCGCATCT TCACGTCTCT CGTACGGTAC TACTCTTTTT ATCTTCTATG CAATTTCTTC
TTCTTCTCCT TCTTCGTCAA TAACTAAGGC AAATTAGGGT TTTCACCGTA TTTTAGTCTG TTTTATTATT CGTTACTTGA
AGGTTTCACT GCCTTTTTTT TTCTATTTGA TTAGCAAAAA ATCGATTCCC ATGGATTTCG ATCAAATGAT GTAAGTCACA
TAGCATAAAC CATTTTCGTG TGTGGATGCA GAGGTGCGTA TAATATAACA GGAAAAATGA GTCGAGGAAG TGCAGCAGGA
GCGAAGGGGA AGAAGAAGGG GGCGACATTC ACCATTGACT GTGCAAAGCC AGTGGAAGAC AAGATCATGG ACATTGCTTC
TCTCGAGAAG TTTCTTCAAG AGAGGATCAA GGTCGGTGGC AAGGCTGGTG CCCTCGGTGA CTCTGTTACT GTTACCCGCG
AGAAGACCAA GATCATTGTC ACCTCTGACA GTAACTTCTC CAAAAGGTGA TTTTCGATGT ATTACTGCAT ATAAAACGTG
TAGGGCGATA GATTGCTTAT ATATCCGAAG TTTAGTAGCA GAATTTTTTA AATAGAGGTC GCTGTAAATG TTAGGGTTCT
TTAATATTAT GGTTAGTTGC TGACAAATGC CATTGATATG ACCACAATTG TCGTGGTTTT TAATCGTGCA TAACATTTTG
TCAATGTGTT TGGATTAAAT TTTGGATCGG GAAAATGTGA CGGTATAATA AATTGAGTTT CTTTGATTAG CTAAATGTTC
TTAACCTTTA TAGAAATTCT TTTTGCATAA CTTTCCCAAG GGTAAGGACA TGATTATGGG AGAAAGAAAC ATAGTTCATT
TTACCTTGTA TACTTTTACA TAAGTGCCAA TTCATCCAAG TCGTATTGTG ATTAGAACTT TTCTTTTTCA TTTATCTTGA
TATCGTGAAT TAGGGTGTAA GTGTTTGTCT GCCTGTATTG TTCCAGGTAT CTGAAGTACT TGACTAAGAA GTACTTGAAG
AAACACAATG TGCGAGACTG GCTCAGAGTG ATTGCTTCGA ACAAGGATAG AAATGTTTAT GAATTGAGGT ACTTCAACAT
TGCTGAGAAT GAGGGTGAGG AGGAAGATTA GTTGTCTGAT AGCACCTTAT TCTCTGAGTG TTTTGTTTAC ACTTTTCTTA
TAGCTAGCTT CCTTTTTGGC AAGGATTGCT TGATATAACC GTACTTTGTT TTGATCAGTT GCAATTTAAC ATTTTTTATC
ATTTAAGAAT TTTGTACTTT TAATGTTAGA TGGGAATGGA GTTTGCATAT TATTCTGTTT TGTCTTAGTC TTTAATATGG
TTAAATTGCA TAATGTTCCT TTCCACAATG TCAAATAATT TACCACTTCC TAGATCAGCT CGTGCTCATT CTGCTCCCTA
TTGTCCATTA CCAAATTGTT TGCACGTGGT TGATAGTTTG TTGATTGTTT GTCCATTGTT CAGCATTGGG GGAATTATTT
TTGGATAGTT ATGTTGCTTG GTTGGGCAAA TTTTCAGTGG ATGCTGTGCG AATCATTGAT TTTGGAA

>Vigan.05G154800.01
AAAAAACATA AAACGCAGGT CTGGATCCAT CATATAAAAA CTGAAATCCA AACCCTAAAT ATCCACTGCG GTTCTCATCT
CTTCCCAATC CTAACCTCAC CGCCGCATCT TCACGTCTCT CGTACGGTAC TACTCTTTTT ATCTTCTATG CAATTTCTTC
TTCTTCTCCT TCTTCGTCAA TAACTAAGGC AAATTAGGGT TTTCACCGTA TTTTAGTCTG TTTTATTATT CGTTACTTGA
AGGTTTCACT GCCTTTTTTT TTCTATTTGA TTAGCAAAAA ATCGATTCCC ATGGATTTCG ATCAAATGAT GTAAGTCACA
TAGCATAAAC CATTTTCGTG TGTGGATGCA GAGGTGCGTA TAATATAACA GGAAAAATGA GTCGAGGAAG TGCAGCAGGA
GCGAAGGGGA AGAAGAAGGG GGCGACATTC ACCATTGACT GTGCAAAGCC AGTGGAAGAC AAGATCATGG ACATTGCTTC
TCTCGAGAAG TTTCTTCAAG AGAGGATCAA GGTCGGTGGC AAGGCTGGTG CCCTCGGTGA CTCTGTTACT GTTACCCGCG
AGAAGACCAA GATCATTGTC ACCTCTGACA GTAACTTCTC CAAAAGGTAT CTGAAGTACT TGACTAAGAA GTACTTGAAG
AAACACAATG TGCGAGACTG GCTCAGAGTG ATTGCTTCGA ACAAGGATAG AAATGTTTAT GAATTGAGGT ACTTCAACAT
TGCTGAGAAT GAGGGTGAGG AGGAAGATTA GTTGTCTGAT AGCACCTTAT TCTCTGAGTG TTTTGTTTAC ACTTTTCTTA
TAGCTAGCTT CCTTTTTGGC AAGGATTGCT TGATATAACC GTACTTTGTT TTGATCAGTT GCAATTTAAC ATTTTTTATC
ATTTAAGAAT TTTGTACTTT TAATGTTAGA TGGGAATGGA GTTTGCATAT TATTCTGTTT TGTCTTAGTC TTTAATATGG
TTAAATTGCA TAATGTTCCT TTCCACAATG TCAAATAATT TACCACTTCC TAGATCAGCT CGTGCTCATT CTGCTCCCTA
TTGTCCATTA CCAAATTGTT TGCACGTGGT TGATAGTTTG TTGATTGTTT GTCCATTGTT CAGCATTGGG GGAATTATTT
TTGGATAGTT ATGTTGCTTG GTTGGGCAAA TTTTCAGTGG ATGCTGTGCG AATCATTGAT TTTGGAA

>Vigan.05G154800.01
ATGAGTCGAG GAAGTGCAGC AGGAGCGAAG GGGAAGAAGA AGGGGGCGAC ATTCACCATT GACTGTGCAA AGCCAGTGGA
AGACAAGATC ATGGACATTG CTTCTCTCGA GAAGTTTCTT CAAGAGAGGA TCAAGGTCGG TGGCAAGGCT GGTGCCCTCG
GTGACTCTGT TACTGTTACC CGCGAGAAGA CCAAGATCAT TGTCACCTCT GACAGTAACT TCTCCAAAAG GTATCTGAAG
TACTTGACTA AGAAGTACTT GAAGAAACAC AATGTGCGAG ACTGGCTCAG AGTGATTGCT TCGAACAAGG ATAGAAATGT
TTATGAATTG AGGTACTTCA ACATTGCTGA GAATGAGGGT GAGGAGGAAG ATTAG

>Vigan.05G154800.01
MSRGSAAGAK GKKKGATFTI DCAKPVEDKI MDIASLEKFL QERIKVGGKA GALGDSVTVT REKTKIIVTS DSNFSKRYLK
YLTKKYLKKH NVRDWLRVIA SNKDRNVYEL RYFNIAENEG EEED*