GBrowse Details

Vigan.05G153900.01

Basic Information:
Name: Vigan.05G153900.01
Multiple alignment
Variant Information
Position: Chr05:12665487..12670768 (+ strand)
Length: 5282
Functional Information:
Description: Similar to ATP-dependent Clp protease proteolytic subunit. [V7BR12, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
InterPro: ClpP (IPR001907)
Clp protease proteolytic subunit /Translocation-enhancing protein TepA (IPR023562)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:38.29,19.79,24.18,72.18,18.24,12.69,12.52,19.42
Arabidopsis thaliana homolog: AT1G09130.3
Automatic updates:
Name: NM_001254999 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like (LOC100809485), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:12665487..12665611 (+ strand)
Length: 125
Type: five_prime_UTR
Position: Chr05:12665612..12665911 (+ strand)
Length: 300
Type: CDS
Position: Chr05:12666340..12666441 (+ strand)
Length: 102
Type: CDS
Position: Chr05:12666553..12666675 (+ strand)
Length: 123
Type: CDS
Position: Chr05:12666836..12666895 (+ strand)
Length: 60
Type: CDS
Position: Chr05:12667270..12667366 (+ strand)
Length: 97
Type: CDS
Position: Chr05:12667448..12667521 (+ strand)
Length: 74
Type: CDS
Position: Chr05:12669266..12669319 (+ strand)
Length: 54
Type: CDS
Position: Chr05:12669417..12669500 (+ strand)
Length: 84
Type: CDS
Position: Chr05:12669595..12669690 (+ strand)
Length: 96
Type: CDS
Position: Chr05:12669691..12670768 (+ strand)
Length: 1078
Type: three_prime_UTR

>Vigan.05G153900.01 class=Sequence position=Chr05:12665487..12670768 (+ strand)
AAAACCTAAA TATATCAAAT CCTCTACCAA AAGAAACAAA AATTGTATAT TACATCTCAC GCTAGCCGGT TCACTGTGTG
TGCTAATCCA TTTGTGGCTG AAACCCAGTT GAAGTATTGC ACAGTATGAT AGGTGGAACC ATGATGGCTG CGTATTTGCG
AGTTCCCATG CTCACTTTCT CACAGTCTTC CACAGCTACG ACAAGGAGAT GCAGAAATCA AAGAACTCGT TGTTCAGTTA
ACGCCGCCAC TAACAGCGCC AAAATTCCAA TGCCTCCTCA CAACCCTAAA GACCCATTTC TCTCCAAGCT CGCCTCCGTC
GCCGCCTCTG CCCCGGAAAC GCTCCTCAAC CCTCCCCGTA ACTCCGACGC CCCTCCTTTT CTCGACATCT TCGATACCCC
CAAACTCATG GCTACTCCCG CTCAAGTAAT TATATTTTCA TTTTCACTTT TTTTTTTCAC TGCTGTGTCA ATACTTGGTT
TGGTTAGGTT TTCTGGTTAC ACAACGTGCT ACTTACTAAT TCTCGAAACA ATTTGAAGTT AAAATTTAGT GTCCCAGCTT
CATTGATTGA TTAGAATTAC GGTTAAAGAG ATTGGATGCT CTGTTTTATT TTTCTGGTAA GTGCTGGAGA ATTTCTGTTT
GGATAAACTT TTAGATAGAT AAATATAATA CGAGAAGGAA ATAAGAAGGA AAAATGAAAT AAATTTGAGC TTATGCACTA
GTTAAAAATC ATCTCCTACG GAAGCTAATA CGGGAGAATT TCTGTAAATA CTCTTTGCAA TTAGTTTATG CATAGGATGA
TAATGTTTGC TTATCTGTTG GTGTAACTTG AACGATTGTG TGGTTTGAAT TAGGTTGAAA GGTCTGTTTC ATACAATGAA
CATCGGCCCA CAAAACCGCC GCCGGACCTG CCTTCATTGC TTCTCAATGG TAGAATTATT TACATTGGGA TGCCTGTAAG
TGTTCGGTTG ATTTATGTGC TCTTGCATTT GGTGCCAGTT CTGCTTGTGG CCCTTAGTTA ATACTTTTAA TTTGTACAAC
GTGCCATGAC TCTTTCTGTG TTTCAGTTGG TTCCGGCTGT CACAGAACTA GTTATTGCGG AATTGATGTA CTTGCAGTTT
ATGGATCCTA AAGAGCCAAT CTATATGTAC ATAAATTCCA CTGGGACTAC TCGAGATGAT GGTGAAACGG TAATTGGCTT
CTGCCTTGCT GTTTATATGA AACGTTTGAT GTATCATGGA CTCTTTTTAG ATGTGCTTTT GATATCCGTG GTTTAAGATA
ATCTGTAAAG CTGACTGTCT GCCTTTCTCC TTATTTTTAT CCTTGAACAT TTTGAGTTCT TGCGTTCAGG TAGGCATGGA
GACAGAAGGT TTTGCCATTT ATGATGCAAT GAGGCAGTTA AAGAACGAGG TTTGTTTGCT TTTATTGATT ATCTACTGGT
ATGCCTTGTT GAGTTCTATT AGTGATGGTA CTTTGTAGTA ATGACGCAAT AAGATTGTTG GTTGCCTCAG TTTTCGGGAA
AATTTGAATA ATGATGATAT CATTATGGTG ACAGTTCCTT CTATACTGCA GTTTATGTTT TATTGGCATG TGACCTGGAA
TTAATATTTA TGACTTAATC AGAGTAACTT ATTTTGAAAC AATTATGATG GACAGCAGGG TAATAACCTT TCTTCTAAGC
ATTACGAATT ATTATTTACC TTGTTGAGCT GTGTTTTTTT TTCTTTTCAC TAAGATTTTG AATATATCTT TTGTCGTGTA
TTTGGCTTTG GCATCCGGAG CAGATACACA CAGTGGGTGT TGGAGCTTGT ATAGGTCAAG CCTGTTTGCT ACTTTCAGCA
GGCACTCCGG GTAAACGCTT TATGATGCCA CATGCTAAAG GTAAAGTTGG GATTTAACTT TGTAGCTTCG TTCCCTTAAT
TCCTTATAGA TGTAATAGTT ATCTATTGAT ATCTGTTTCA GCTATGATTC AGCAACCTCG TATCCCATCC TCTGGGTTGA
TGCCTGCAAG TGATGTTCTT ATTCGTGCAA AGGAGGTTAG TCTACGCATT GTTTTTTCTA TACTGTAGTT TTTATCATAA
CAAATGACAA AAAGCTTTGT TCCTCACATT ACATGGTACG AAAGCTCACT CCTCTTTTAG GGTCAAGAGA TCCTGAAAAT
CACCTGGAAG CATTTTAAAC CCATATGTTA ATCTCAGGCA GATTACATGT TGTACAGTGC AAAATGTGAC TAGCGACCTT
CTTTGGAACT GCTTTACAAT GGTTTAGTGG AATTCTCGAT GGGACTATCA GCTCTTTTCC TTGGTTTTCT CACATGTTAG
TCCAACGATT CACAGCTAAC AAAATCAAAC CCCCTAAGAT GACCAATCTC TTTGATATCA AGTAGTAGGA AAGCAAGTCT
CTAAAAGGTT ATCTCAACCA ACTTTTTGTG ACATTAGTGT ACACATCCAT CAACCAAACA AGGAGATGTT TGTTGACGCC
TTCAACAAGG GCTTTAGGGC CAGCTTATTC AGTGAATTCT GGTTTGTAAT AAAGTTGAGT CAATGGCCTA TGTTTGAAAT
AAGGCCTCCT CTCACATTCA AGTTGAAGAA CTAATGCAAC AAAAACACAA CCGAGGAAAG ACGCCACCAT AGAGAAGATC
GTAATGAATG GAAGCCAAAG GACAATTCAT TCAAGTAGAA GAAAGGGCGA ATAGGCGATA TGTATCCTAC ATCACCCAAA
AACCTCTTGT TGACATCACC TACCCAACCC TAGCGGTCTC CCACAAGGAG ATCCTCACAG ATGATAAGGT GGCTAGTAGA
CTTCTATTTC CAAGATGAAC CCTTTGAATC TTAAGCCCTA GCCATGATGT TTGGTGTGAG TTTCACCAAG CCCATGGGCA
TGACATGGAG AAATGTTACG CCGTAACTAC TCAACTAGCT CAACTAGTCA AGGAGGGTTG AGTACATCAT TATAAGTGAA
TGACATCGCA AAGCCCATCA TCTGGGTCTT CGAAACCCAA ACCTCATCAA CTGGGGTCTC TGAAACCCAA ACCTCATCAA
CTGACGAGCA TAAAACACTT ATTCTTTAGG ACTTCAAAAC TATCATGGGA GTTTTATATG GGGATGAAGT TATGAGCTTC
AAAGTGAACA ATACCTCAGA TGTGATGATT GACCCTAACG ATGTGAGGAT GGATGAGGTT CCAAAGACTA ACCCTCCTAC
TCCTTAGACC TAACTAGGGG GACTTGTTTC GGTATGCCCT ATAATTACAT GCTCTTAGGA GTTGAGGCCA ATGACAATTT
AAATACACCT TCCTCTTCTA ACCTTCCAAG GCACCTTTTA AAAACAAAAC TATGACTGAG TTTCGAGCTC CAAAACGGAC
AATATCTTAG ATGGCGATGT TATCTCAACA GGCTTAAGAT CATAACATTG GCATTGTGTG TAGGGATAAA AATGAGGTTC
CAAAGACATT ATTGGGAAGA ATGGAAAAAT GGTTCCAAAA AGGAACCCTT GTTCCCCTTA GACTAATAAG GGGCTACTCT
GGTACACCCA ATAGTCCTAC ATCTCTTAGG AGTCAAGACT AAGGACAATT TAAATACACA TTCCTACCTT AACCTTCTGA
AGTGCTTTTT AAGAACAAAA TTGTGAATAA GACAATTGAT CTTAATGATG TTTTCTCAAC ATATTTGAAT TGAAACAAGA
GCAATTCTTC ATCTATATAA ATGTGAATCA AAACATCTTA ATTTGCCCTC CTTTTTTTCT ACTCTTATTT ACTTACTTTT
TAACCCTATA CAATTGCAGG TGATAACTAA CAGAGACAAT CTGATTAAAC TACTGGCTAA ACACACGGGA AATGTGAGTA
TCATGCACAG GTACTAGATG TCATATTTAT TTAGGAAAGA TGAGGTCAAA TCTTATATTT CTGTTCTTTG CGTCTTTTCT
AAATTACCAG TCAGAGGAAA CAGTTGCTAA AGTGATGAGG AGGCCATATT ATATGGATGC AATAAAGGCT AAGGAATTTG
GTGTCATTGA CAGAGTAAGT ACTTATTTAT ATAATGTGAA TGGGTTGTCT AGTCTATTCT CTTGAACATG CATTCCTGAC
CAAGCCAATG CTGGAACACT GTTCCCAGGT TCTTTGGCGT GGCCAGGAAA AGATTATGGC TGACGTTGCT CCTCCAGAGG
AGTGGGACAA GGGTGCTGGT ATTAAAGTTG TAGATGAATT CTAGTTCCTC TTTTGTGGAT ACATACTTGT CAATGTAAGT
GAATCATATT TTCCTCACTC ATTTGGTCAC TGTAAAATGT GGAATCTCTA TTTGGTTTTT TGTGACAATG CTTTCCTCGT
TTTTTGGGGT GGCCGTGGGG GATACAAAGG CGTTTACTGC TTCAGTTCTG GCAGTGCGAA CCAAGTGAAG CTCCTAATCT
GCTCTGTGAG AATGCAGCAT ATATGGTGGT GTTAGGGAAA GTAGAAAACG AGCTCTGAAT TGTTTAAACA AAGATGTAAA
TAAGTCCAAA TAAATTTGAA CTAGTTCAAA ACATATTGAT TTTGCATAAA GTTTGTTTCT GAAGCAGTTT AATGAATAAT
GTTTGGGTAT CTTTGTTTAA ATTGCGCTCA TAAAGCAAAG AAGAAAAAAG AAAGAGGGAT GGGGAAAAAA TTAAGTTGCC
TTTAATTCAA ATGGAACTAG TTACTTCATA GCGTACTTGA AAGTTTCTTT GGAATACTAC TATAAATGGC CTGGCAATAA
TCTGATGTGT ATAAGGGTTC TAAACTTTTT TCCTTAAACA TCAAGCGACG ACTTGATATT CTTGTCGGCA TGATGAATGT
CTATCTGATT TAGTTTGCTG TGGCTTACTA ATTTTTTAAA AATATCAAGA GCAAAGTTTC ACATATTTTT GTGTTGTGAT
CAGAATTTTT ATGACGATGG TCTTTTTCAG GTCACAAGTT TCAGTAGGAT TTGTTTTCAC TGTCTACGAG TCCAGAAATG
TGCCACAGCT ATTGACAGAA AACTGACCTG TAGGTTATGA GCCGAAGTGC CAGAAGGAAG AAAGTTGATG GACATTTTAC
TAAGAATGTT AGGGAAAAAC ATAGAAAAAG AAACAGCGAT GTTCATCCAT GTGGTCATAT ACAATGTTTT GGTTCTGGTC
ATTGTGTAGT CATTGATTGT CGCCCGATTA TTTATATAGG GACTCTGACG TTTATCATTA TACTATCAAT GAAGGACATG
CAAATTTGTT ATATTTTTGT TTCTATATCG TTCAAGCCAG ATGAATCTTT ACAAATTACC TACCCTTTCT ATTATTCAGT
TC

>Vigan.05G153900.01
AAAACCTAAA TATATCAAAT CCTCTACCAA AAGAAACAAA AATTGTATAT TACATCTCAC GCTAGCCGGT TCACTGTGTG
TGCTAATCCA TTTGTGGCTG AAACCCAGTT GAAGTATTGC ACAGTATGAT AGGTGGAACC ATGATGGCTG CGTATTTGCG
AGTTCCCATG CTCACTTTCT CACAGTCTTC CACAGCTACG ACAAGGAGAT GCAGAAATCA AAGAACTCGT TGTTCAGTTA
ACGCCGCCAC TAACAGCGCC AAAATTCCAA TGCCTCCTCA CAACCCTAAA GACCCATTTC TCTCCAAGCT CGCCTCCGTC
GCCGCCTCTG CCCCGGAAAC GCTCCTCAAC CCTCCCCGTA ACTCCGACGC CCCTCCTTTT CTCGACATCT TCGATACCCC
CAAACTCATG GCTACTCCCG CTCAAGTTGA AAGGTCTGTT TCATACAATG AACATCGGCC CACAAAACCG CCGCCGGACC
TGCCTTCATT GCTTCTCAAT GGTAGAATTA TTTACATTGG GATGCCTTTG GTTCCGGCTG TCACAGAACT AGTTATTGCG
GAATTGATGT ACTTGCAGTT TATGGATCCT AAAGAGCCAA TCTATATGTA CATAAATTCC ACTGGGACTA CTCGAGATGA
TGGTGAAACG GTAGGCATGG AGACAGAAGG TTTTGCCATT TATGATGCAA TGAGGCAGTT AAAGAACGAG ATACACACAG
TGGGTGTTGG AGCTTGTATA GGTCAAGCCT GTTTGCTACT TTCAGCAGGC ACTCCGGGTA AACGCTTTAT GATGCCACAT
GCTAAAGCTA TGATTCAGCA ACCTCGTATC CCATCCTCTG GGTTGATGCC TGCAAGTGAT GTTCTTATTC GTGCAAAGGA
GGTGATAACT AACAGAGACA ATCTGATTAA ACTACTGGCT AAACACACGG GAAATTCAGA GGAAACAGTT GCTAAAGTGA
TGAGGAGGCC ATATTATATG GATGCAATAA AGGCTAAGGA ATTTGGTGTC ATTGACAGAG TTCTTTGGCG TGGCCAGGAA
AAGATTATGG CTGACGTTGC TCCTCCAGAG GAGTGGGACA AGGGTGCTGG TATTAAAGTT GTAGATGAAT TCTAGTTCCT
CTTTTGTGGA TACATACTTG TCAATGTAAG TGAATCATAT TTTCCTCACT CATTTGGTCA CTGTAAAATG TGGAATCTCT
ATTTGGTTTT TTGTGACAAT GCTTTCCTCG TTTTTTGGGG TGGCCGTGGG GGATACAAAG GCGTTTACTG CTTCAGTTCT
GGCAGTGCGA ACCAAGTGAA GCTCCTAATC TGCTCTGTGA GAATGCAGCA TATATGGTGG TGTTAGGGAA AGTAGAAAAC
GAGCTCTGAA TTGTTTAAAC AAAGATGTAA ATAAGTCCAA ATAAATTTGA ACTAGTTCAA AACATATTGA TTTTGCATAA
AGTTTGTTTC TGAAGCAGTT TAATGAATAA TGTTTGGGTA TCTTTGTTTA AATTGCGCTC ATAAAGCAAA GAAGAAAAAA
GAAAGAGGGA TGGGGAAAAA ATTAAGTTGC CTTTAATTCA AATGGAACTA GTTACTTCAT AGCGTACTTG AAAGTTTCTT
TGGAATACTA CTATAAATGG CCTGGCAATA ATCTGATGTG TATAAGGGTT CTAAACTTTT TTCCTTAAAC ATCAAGCGAC
GACTTGATAT TCTTGTCGGC ATGATGAATG TCTATCTGAT TTAGTTTGCT GTGGCTTACT AATTTTTTAA AAATATCAAG
AGCAAAGTTT CACATATTTT TGTGTTGTGA TCAGAATTTT TATGACGATG GTCTTTTTCA GGTCACAAGT TTCAGTAGGA
TTTGTTTTCA CTGTCTACGA GTCCAGAAAT GTGCCACAGC TATTGACAGA AAACTGACCT GTAGGTTATG AGCCGAAGTG
CCAGAAGGAA GAAAGTTGAT GGACATTTTA CTAAGAATGT TAGGGAAAAA CATAGAAAAA GAAACAGCGA TGTTCATCCA
TGTGGTCATA TACAATGTTT TGGTTCTGGT CATTGTGTAG TCATTGATTG TCGCCCGATT ATTTATATAG GGACTCTGAC
GTTTATCATT ATACTATCAA TGAAGGACAT GCAAATTTGT TATATTTTTG TTTCTATATC GTTCAAGCCA GATGAATCTT
TACAAATTAC CTACCCTTTC TATTATTCAG TTC

>Vigan.05G153900.01
ATGATAGGTG GAACCATGAT GGCTGCGTAT TTGCGAGTTC CCATGCTCAC TTTCTCACAG TCTTCCACAG CTACGACAAG
GAGATGCAGA AATCAAAGAA CTCGTTGTTC AGTTAACGCC GCCACTAACA GCGCCAAAAT TCCAATGCCT CCTCACAACC
CTAAAGACCC ATTTCTCTCC AAGCTCGCCT CCGTCGCCGC CTCTGCCCCG GAAACGCTCC TCAACCCTCC CCGTAACTCC
GACGCCCCTC CTTTTCTCGA CATCTTCGAT ACCCCCAAAC TCATGGCTAC TCCCGCTCAA GTTGAAAGGT CTGTTTCATA
CAATGAACAT CGGCCCACAA AACCGCCGCC GGACCTGCCT TCATTGCTTC TCAATGGTAG AATTATTTAC ATTGGGATGC
CTTTGGTTCC GGCTGTCACA GAACTAGTTA TTGCGGAATT GATGTACTTG CAGTTTATGG ATCCTAAAGA GCCAATCTAT
ATGTACATAA ATTCCACTGG GACTACTCGA GATGATGGTG AAACGGTAGG CATGGAGACA GAAGGTTTTG CCATTTATGA
TGCAATGAGG CAGTTAAAGA ACGAGATACA CACAGTGGGT GTTGGAGCTT GTATAGGTCA AGCCTGTTTG CTACTTTCAG
CAGGCACTCC GGGTAAACGC TTTATGATGC CACATGCTAA AGCTATGATT CAGCAACCTC GTATCCCATC CTCTGGGTTG
ATGCCTGCAA GTGATGTTCT TATTCGTGCA AAGGAGGTGA TAACTAACAG AGACAATCTG ATTAAACTAC TGGCTAAACA
CACGGGAAAT TCAGAGGAAA CAGTTGCTAA AGTGATGAGG AGGCCATATT ATATGGATGC AATAAAGGCT AAGGAATTTG
GTGTCATTGA CAGAGTTCTT TGGCGTGGCC AGGAAAAGAT TATGGCTGAC GTTGCTCCTC CAGAGGAGTG GGACAAGGGT
GCTGGTATTA AAGTTGTAGA TGAATTCTAG 

>Vigan.05G153900.01
MIGGTMMAAY LRVPMLTFSQ SSTATTRRCR NQRTRCSVNA ATNSAKIPMP PHNPKDPFLS KLASVAASAP ETLLNPPRNS
DAPPFLDIFD TPKLMATPAQ VERSVSYNEH RPTKPPPDLP SLLLNGRIIY IGMPLVPAVT ELVIAELMYL QFMDPKEPIY
MYINSTGTTR DDGETVGMET EGFAIYDAMR QLKNEIHTVG VGACIGQACL LLSAGTPGKR FMMPHAKAMI QQPRIPSSGL
MPASDVLIRA KEVITNRDNL IKLLAKHTGN SEETVAKVMR RPYYMDAIKA KEFGVIDRVL WRGQEKIMAD VAPPEEWDKG
AGIKVVDEF*