GBrowse Details

Vigan.05G150000.01

Basic Information:
Name: Vigan.05G150000.01
Multiple alignment
Variant Information
Position: Chr05:12314300..12318207 (- strand)
Length: 3908
Functional Information:
Description: Similar to uncharacterized protein. [C6T9H0, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: isoprenoid biosynthetic process (GO:0008299)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: mevalonate kinase activity (GO:0004496)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: kinase activity (GO:0016301)
Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773)
InterPro: GHMP kinase, ATP-binding, conserved site (IPR006203)
GHMP kinase N-terminal domain (IPR006204)
Mevalonate kinase (IPR006205)
Mevalonate/galactokinase (IPR006206)
GHMP kinase, C-terminal domain (IPR013750)
Ribosomal protein S5 domain 2-type fold, subgroup (IPR014721)
Ribosomal protein S5 domain 2-type fold (IPR020568)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.34,2.18,28.85,7.60,30.29,30.34,12.34,14.72
Arabidopsis thaliana homolog: AT5G27450.1
Automatic updates:
Name: NM_001289288 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mevalonate kinase-like (LOC100820343), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:12314300..12314896 (- strand)
Length: 597
Type: three_prime_UTR
Position: Chr05:12314897..12315015 (- strand)
Length: 119
Type: CDS
Position: Chr05:12316123..12316536 (- strand)
Length: 414
Type: CDS
Position: Chr05:12317014..12317267 (- strand)
Length: 254
Type: CDS
Position: Chr05:12317360..12317597 (- strand)
Length: 238
Type: CDS
Position: Chr05:12317798..12317930 (- strand)
Length: 133
Type: CDS
Position: Chr05:12317931..12318207 (- strand)
Length: 277
Type: five_prime_UTR

>Vigan.05G150000.01 class=Sequence position=Chr05:12314300..12318207 (- strand)
ATGATTTGAT ATTAAAAACT ATAGGGGAAA ATTGGTTACA TCCGTGATTA AGGTTGGGCT TGGATGATAG GTGAAAATGT
ACAGAAATGT CTGTTGATAA TTAATTGCGC ACGCATTCCA CATGGATCCG CTTCACTGGA CTCAGACACA TATAGGAAGA
CAAAACGACA CGGATTACTC AGAACCCTTG GGGAAGAAGA AGAAGAAGAA AAAGCAATGA AGTGAGAGAG AAACTTTTGG
TTTGTGAAAT CGCAATTCAT AGCATAACCG AAGAGAAATG GAGGTTAGAG CCAGAGCACC GGGGAAGATT ATATTGACCG
GGGAACATGC TGTGGTTCAT GGATCCACCG CAGTTGCTAC TTCCATTGAT TTATACACCT ACGTTTTTGT CCACTTCTCC
ACTCCTTCCG GTATTTTACT CTCTCTCTCG TTGATTTCAT TCTGTTGTTC TTTCAATATC CGCCTCGCGA TCGCAGATAT
GTGTTATTAT TGTTATTATT TGGTTGAAAC TTGCGAAATT TGTCATGATC GGTAATGGCG TGTTTGAGAG ACGCTGTTTT
AGTTATGGTT GAGATTCTGA TTCGGTTAGG ATTTGTGGAT TGTGTGATAG ACGACGGGGA TTTGTTGACA CTGCAGCTGA
AGGACACGGC TTTGGAGTTC TCGTGGCCTA TTAGTAGAAT AAAAGCGGCG TTTCTAGAAT CCGTGTTATC TTGTACTCCT
ACTTCCTGCT CCGTTGAGGT TGCCAAGATC ATTGCCGCAC TCGTTGAAGA GCTGGACATT CCAGAGGCCA AAATTGGAAT
TGCCTCTGGA GTTTCCGCGT TTCTCTGGCT GTACTCTTCT ATTCAAGGGT CTGAACCAAC TCTAAAATTC TTGTTGTGTG
TGTGTGAATG TGTTTTTGTT TTATTTGTGT AGGTTTGATT GTGTTTTGCT CTTTGTGTAG ATTTAAGCCT GCTACTGTGG
TTGTCAATTC TGAACTTCCT CTCGGTTCAG GATTGGGTTC CTCGGCCGCG TTTTGTGTGG CTCTCGCGTC GGCCTTGTTG
GCTTATACTG ATTCTGTTTC TCTGGATTTG AGTCATCAAG GATGGCTCTC CTTTACGGAG AAGGATCTTG AGTTGGTAAA
TAAGTGGGCC TTTGAAGGGG AGAAGATCAT TCATGGAAAG CCATCTGGAA TTGACAACAC AGTAAGCTCG TATGGTATGC
CTCAGCGATT TTGCTACTAA GTTTCATTAA CTTTTATTGA TTACTGTTTG GAACTTGTCT TTTTGTGCAT TTATTCTAGT
TACTGATGAT TAGAGTTTGA ATATTTTGTA TTAATAGGCT GAAAAGGAAC ATAACCTTTG TATAATAGGA GTTTGGAGAG
GATGAATGAA ATGTTTTCGG TTGTTAAGAA GGGATGTGGG AACTAGCCGT GTACGTGTTT CTCTTTTACT TGGTCTGTTA
ATAGTCTCAC CAGAACTAAT TTTAATTAAT GTGGACCGGA AGGCATAACT TAAGGTCATG CATGGCACAC TGATTTGTGC
CAGTGAATTG TGAAATATAC AAGTCTATGA TGGGAGATAT ATCATGTATA AATTGTGATT TGTTTGGAGT GTTTAATTAT
CATATACTGT GTTTACAAAT GTAAGTTACT GCCATTGAAT CTACAACTCA CTGGATAGTT ACCATTATCA GGTAACATTA
TCAGCTTCAA GTCAGGTAAC ATAACGCGAA CAAAGTCAAC TTTGACACTT AAAATGCTCA TCACGAATAC AAAAGTTGGG
AGAAACACAA AAGCATTGGT TGCTGGTGTT GGAGAGAGGA TGCTAAGGCA TCCTGAAATA ATGGCTTTCG TGTTTAGTGC
TGTTGATTCT ATTAGCAAGG AGCTGACTTC CATTCTCAAG TCACCCACAC CTGATGAGCT CTCTCTAACT GAGAAGGAAG
AGAAGATAGA AGAACTAATG GAAATGAATC AAGGTCTGCT CCAGTCTATG GGGGTCAGTC ATGCCACTAT AGAAACTGTT
CTGCGAACAA CATTGAAATA TAAGCTAGCT TCCAAATTGA CTGGAGCTGG TGGTGGGGGC TGTGTTTTGA CGCTGCTTCC
AACATGTATC CTCTTCAATT ATTGTTCTTT TCCTTGTGCT TCTAATGCTT TCCATTACTC TCTAATTTTC TTTTTCTTTT
TTATTTTCTT GCCTGCAGTT AGTTAATAAC CTATGTTTGC TTTATTATTC TATTAATCGC TTTGGTTTAG AAAAGAGGAG
GGAAAGGGAA GGACTCCTTG TTTAGTTTGA GTGGACTTGA CAGAAAATAA AATAATACAC TATCATACTC TTATCATATA
CCAATAAAAC CATTAAGTTC AAGTATTCAA ACTAATGATA ATTTAACCAG ACAATTTTAC AAACTTCAAG CGTTTTCCCT
CACCTTCAAA TCCTTAAAAT ATTGGAGGAG AGACAAAATT AACAGGGAGG GGCTCTTTTT ACCCGTAAAT ACTGCCGGCA
GGATTGTCCT GTATGTTCTG CTATTTATGT GCTGCCTTGT TAGATAAGCA CGAGGTTTGT ATATATACAC TCATAAGGCG
TTTATTAAAC CCTAGACATG CCCTTTTTTG GATTAACTTT TTAACACAGG AGTTTTCCAG TTGAGATAAG TTTAAGGTAG
CTCATAAATT TGAATTAGGG GCATATGAAG TAATTGGGTC AGAAAATTGG GAGAGGTTAA ATGAGGAAGC TTCTTAGAAA
GTTAAGGACT GCAAGTACTT GTTCAGAAAT TAATGCCCAA GTGCATTGAG TGCATATGTG CTGGTTGAAA GTTAAATGAG
GCAACTTCTT GATTTATTTT GTTCTTCTTC TCTAAGTGTT TGTTATGATA TATGGACTTG ACTACATAAG CATGGCTAGA
AAACCTGGAA GTGACAGTAA AGACGTGTTT CTTTAGAGGA AAGTCTTTGC ATTTATCTAT TTTTTCTATA TGACTTTCAT
TTACTCCAAG TAATGTCATT CCACTTCATA CATCACAGTT TTCTTTCTCT AGATATTGTT TGGGCGATTA AAACTTAATT
TTCTGGTGGT GGACGATTTA TTGTCTTCAT AAGAATAGAA ACCAAAGTCG TTTCCTTAAT CCTTGTTGCC CATCATGATT
TCTTAGCTTG TAAGTATAAT ATATTTTTTA ATCTCAATTT CTTGTTTCGC TTCCTTGACA TACTTTAATC AGTACTATCA
GGCACTATTG TAGACAAAGT AATTGCTGAA CTGGAGTCAT GCGGATTCCA GTGTTTCATT GCTGGAATTG GCGGGGGAGG
TGTTGAAGTT AACTTTGCGA TGTCATCTTG ATTTTCTATT TTTATTTTTC CAGGTATTTG ATATCGACAA GTATCAGATC
CTCACATAAA CAGCATAAAT AAATATGCTT CCTTTTTTAC ATCTAGCGTG TCAATCTGTA ACTTTTTCTT TCTGTTGTTG
AATTAATTTA AACAGTTTCT TATTCAATCC TGAATGGAAT TGGCGGATAT AAATTCGCGT ATTTGATTAA GAACATGGTA
GTCAGCGGGA TCGTGGAGTG ACGTATCGTA TCCAAGGTCC GTCTCTTTCA CACGCACACG CTTTAAGTGA TCTTACTGAT
GTGGTTTAAA AATTGTATGA AAACGATTTA GTGTCATAAG GCTGACTCAG ATACTAATTA CCTGGACTGC TTCGAGAATA
TTGCCGGAGG AACTGAAAAC AGAACAGTAC GTACAAATTA CCCCTTTTTC GTACTAAGTA GCCAAGCCAT TTTTGTGTCT
GGATATTGGA TCCAGTTATA TTGCTAGACT CGTGAGAGAT GAATCGGATC CATTTTCTTG ACCCTTAAGA AAAATAGTAC
ATCCTTTACA TAAAAGGAGT TGAAAATATG GAAATGAATG AGGATACTTT GTTAATTACA GAAGTGTT

>Vigan.05G150000.01
ATGATTTGAT ATTAAAAACT ATAGGGGAAA ATTGGTTACA TCCGTGATTA AGGTTGGGCT TGGATGATAG GTGAAAATGT
ACAGAAATGT CTGTTGATAA TTAATTGCGC ACGCATTCCA CATGGATCCG CTTCACTGGA CTCAGACACA TATAGGAAGA
CAAAACGACA CGGATTACTC AGAACCCTTG GGGAAGAAGA AGAAGAAGAA AAAGCAATGA AGTGAGAGAG AAACTTTTGG
TTTGTGAAAT CGCAATTCAT AGCATAACCG AAGAGAAATG GAGGTTAGAG CCAGAGCACC GGGGAAGATT ATATTGACCG
GGGAACATGC TGTGGTTCAT GGATCCACCG CAGTTGCTAC TTCCATTGAT TTATACACCT ACGTTTTTGT CCACTTCTCC
ACTCCTTCCG ACGACGGGGA TTTGTTGACA CTGCAGCTGA AGGACACGGC TTTGGAGTTC TCGTGGCCTA TTAGTAGAAT
AAAAGCGGCG TTTCTAGAAT CCGTGTTATC TTGTACTCCT ACTTCCTGCT CCGTTGAGGT TGCCAAGATC ATTGCCGCAC
TCGTTGAAGA GCTGGACATT CCAGAGGCCA AAATTGGAAT TGCCTCTGGA GTTTCCGCGT TTCTCTGGCT GTACTCTTCT
ATTCAAGGAT TTAAGCCTGC TACTGTGGTT GTCAATTCTG AACTTCCTCT CGGTTCAGGA TTGGGTTCCT CGGCCGCGTT
TTGTGTGGCT CTCGCGTCGG CCTTGTTGGC TTATACTGAT TCTGTTTCTC TGGATTTGAG TCATCAAGGA TGGCTCTCCT
TTACGGAGAA GGATCTTGAG TTGGTAAATA AGTGGGCCTT TGAAGGGGAG AAGATCATTC ATGGAAAGCC ATCTGGAATT
GACAACACAG TAAGCTCGTA TGGTAACATT ATCAGCTTCA AGTCAGGTAA CATAACGCGA ACAAAGTCAA CTTTGACACT
TAAAATGCTC ATCACGAATA CAAAAGTTGG GAGAAACACA AAAGCATTGG TTGCTGGTGT TGGAGAGAGG ATGCTAAGGC
ATCCTGAAAT AATGGCTTTC GTGTTTAGTG CTGTTGATTC TATTAGCAAG GAGCTGACTT CCATTCTCAA GTCACCCACA
CCTGATGAGC TCTCTCTAAC TGAGAAGGAA GAGAAGATAG AAGAACTAAT GGAAATGAAT CAAGGTCTGC TCCAGTCTAT
GGGGGTCAGT CATGCCACTA TAGAAACTGT TCTGCGAACA ACATTGAAAT ATAAGCTAGC TTCCAAATTG ACTGGAGCTG
GTGGTGGGGG CTGTGTTTTG ACGCTGCTTC CAACATTACT ATCAGGCACT ATTGTAGACA AAGTAATTGC TGAACTGGAG
TCATGCGGAT TCCAGTGTTT CATTGCTGGA ATTGGCGGGG GAGGTGTTGA AGTTAACTTT GCGATGTCAT CTTGATTTTC
TATTTTTATT TTTCCAGGTA TTTGATATCG ACAAGTATCA GATCCTCACA TAAACAGCAT AAATAAATAT GCTTCCTTTT
TTACATCTAG CGTGTCAATC TGTAACTTTT TCTTTCTGTT GTTGAATTAA TTTAAACAGT TTCTTATTCA ATCCTGAATG
GAATTGGCGG ATATAAATTC GCGTATTTGA TTAAGAACAT GGTAGTCAGC GGGATCGTGG AGTGACGTAT CGTATCCAAG
GTCCGTCTCT TTCACACGCA CACGCTTTAA GTGATCTTAC TGATGTGGTT TAAAAATTGT ATGAAAACGA TTTAGTGTCA
TAAGGCTGAC TCAGATACTA ATTACCTGGA CTGCTTCGAG AATATTGCCG GAGGAACTGA AAACAGAACA GTACGTACAA
ATTACCCCTT TTTCGTACTA AGTAGCCAAG CCATTTTTGT GTCTGGATAT TGGATCCAGT TATATTGCTA GACTCGTGAG
AGATGAATCG GATCCATTTT CTTGACCCTT AAGAAAAATA GTACATCCTT TACATAAAAG GAGTTGAAAA TATGGAAATG
AATGAGGATA CTTTGTTAAT TACAGAAGTG TT

>Vigan.05G150000.01
ATGGAGGTTA GAGCCAGAGC ACCGGGGAAG ATTATATTGA CCGGGGAACA TGCTGTGGTT CATGGATCCA CCGCAGTTGC
TACTTCCATT GATTTATACA CCTACGTTTT TGTCCACTTC TCCACTCCTT CCGACGACGG GGATTTGTTG ACACTGCAGC
TGAAGGACAC GGCTTTGGAG TTCTCGTGGC CTATTAGTAG AATAAAAGCG GCGTTTCTAG AATCCGTGTT ATCTTGTACT
CCTACTTCCT GCTCCGTTGA GGTTGCCAAG ATCATTGCCG CACTCGTTGA AGAGCTGGAC ATTCCAGAGG CCAAAATTGG
AATTGCCTCT GGAGTTTCCG CGTTTCTCTG GCTGTACTCT TCTATTCAAG GATTTAAGCC TGCTACTGTG GTTGTCAATT
CTGAACTTCC TCTCGGTTCA GGATTGGGTT CCTCGGCCGC GTTTTGTGTG GCTCTCGCGT CGGCCTTGTT GGCTTATACT
GATTCTGTTT CTCTGGATTT GAGTCATCAA GGATGGCTCT CCTTTACGGA GAAGGATCTT GAGTTGGTAA ATAAGTGGGC
CTTTGAAGGG GAGAAGATCA TTCATGGAAA GCCATCTGGA ATTGACAACA CAGTAAGCTC GTATGGTAAC ATTATCAGCT
TCAAGTCAGG TAACATAACG CGAACAAAGT CAACTTTGAC ACTTAAAATG CTCATCACGA ATACAAAAGT TGGGAGAAAC
ACAAAAGCAT TGGTTGCTGG TGTTGGAGAG AGGATGCTAA GGCATCCTGA AATAATGGCT TTCGTGTTTA GTGCTGTTGA
TTCTATTAGC AAGGAGCTGA CTTCCATTCT CAAGTCACCC ACACCTGATG AGCTCTCTCT AACTGAGAAG GAAGAGAAGA
TAGAAGAACT AATGGAAATG AATCAAGGTC TGCTCCAGTC TATGGGGGTC AGTCATGCCA CTATAGAAAC TGTTCTGCGA
ACAACATTGA AATATAAGCT AGCTTCCAAA TTGACTGGAG CTGGTGGTGG GGGCTGTGTT TTGACGCTGC TTCCAACATT
ACTATCAGGC ACTATTGTAG ACAAAGTAAT TGCTGAACTG GAGTCATGCG GATTCCAGTG TTTCATTGCT GGAATTGGCG
GGGGAGGTGT TGAAGTTAAC TTTGCGATGT CATCTTGA

>Vigan.05G150000.01
MEVRARAPGK IILTGEHAVV HGSTAVATSI DLYTYVFVHF STPSDDGDLL TLQLKDTALE FSWPISRIKA AFLESVLSCT
PTSCSVEVAK IIAALVEELD IPEAKIGIAS GVSAFLWLYS SIQGFKPATV VVNSELPLGS GLGSSAAFCV ALASALLAYT
DSVSLDLSHQ GWLSFTEKDL ELVNKWAFEG EKIIHGKPSG IDNTVSSYGN IISFKSGNIT RTKSTLTLKM LITNTKVGRN
TKALVAGVGE RMLRHPEIMA FVFSAVDSIS KELTSILKSP TPDELSLTEK EEKIEELMEM NQGLLQSMGV SHATIETVLR
TTLKYKLASK LTGAGGGGCV LTLLPTLLSG TIVDKVIAEL ESCGFQCFIA GIGGGGVEVN FAMSS*