GBrowse Details

Vigan.05G141500.01

Basic Information:
Name: Vigan.05G141500.01
Multiple alignment
Variant Information
Position: Chr05:11546622..11548617 (+ strand)
Length: 1996
Functional Information:
Description: Similar to 40S ribosomal protein S24. [V7BG07, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S24e (IPR001976)
Nucleotide-binding, alpha-beta plait (IPR012677)
Ribosomal protein L23/L15e core domain (IPR012678)
Ribosomal S24e conserved site (IPR018098)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:254.35,344.69,206.61,156.62,341.90,446.10,288.58,159.64
Arabidopsis thaliana homolog: AT5G28060.1
Automatic updates:
Name: NM_001249988 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499852 (LOC100499852), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250287 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305568 (LOC100305568), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251211 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499673 (LOC100499673), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253247 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 40S ribosomal protein S24-2-like (LOC100802918), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:11546622..11546693 (+ strand)
Length: 72
Type: five_prime_UTR
Position: Chr05:11546694..11546765 (+ strand)
Length: 72
Type: CDS
Position: Chr05:11547193..11547234 (+ strand)
Length: 42
Type: CDS
Position: Chr05:11547401..11547571 (+ strand)
Length: 171
Type: CDS
Position: Chr05:11548079..11548165 (+ strand)
Length: 87
Type: CDS
Position: Chr05:11548260..11548301 (+ strand)
Length: 42
Type: CDS
Position: Chr05:11548302..11548617 (+ strand)
Length: 316
Type: three_prime_UTR

>Vigan.05G141500.01 class=Sequence position=Chr05:11546622..11548617 (+ strand)
AGTGTGCGTG TTGTGGAGCT GCTGTAACCG CATCTGTGTG AAGTTCTTCG GTGCCAAACC TCACCCAACA GTATGGCGGA
CAAGGCTGTT ACAATCCGAA CTCGCAAGTT CATGACTAAC AGGCTTCTTT CCAGGAAGCA GTTTGTGAGT TTTCCTTGTA
CTTTTTTTTT TCCGATACAA ATCTGCAAAT GCAAATGATT GTTTAAACTG CATTTCCGAG TCTTGTTTAT TTTTTGTTTC
TGATTTTTGT TGCTGCTCAC ATATCCGCCG TATGATTCTG ACTGATCGGT TGTGCCTTTG TGTGGGAATC GTGTATATTT
AATTGAGCCG TGTGGCTTGA CGAAGCGATT TTGTTTAATT GCCTATTGTT AGAGCACTTT TGATCTGAAT CTATGCAACG
AGTGGTGTGA TTTTCACATT TATATGATTG TCGGCCAGTA GGGTGGTTCG TATTTCTTAG TTAGTTGTCT ACTAGGTTAT
GGAATGTGGA AGTTGTTTTC CTAATTAAAG CTTGAGTGAT TCTTAGCGAC GGCACCACTA ATCCTTCTAT ATATACATGT
TTGTGTTGCA GGTTGTGGAC GTACTTCATC CAGGGAGGGC AAATGTTTCC AAGGTACTTT CGTTTTAGAT TTTAAGTATT
TTTTTAAATA ACTTTTTAGG GAATTCAGAA ACTGTCAATA TCCCTTGCTA TCAACTGTGT CAATTTTTGA GATGTTATTC
ATTGACAATT ACACTAGGAT TTTTTGAATT AATTTGTTGT GTCTATCTTG AAATAATAGG CTGAACTCAA GGAGAAGCTT
GCTAGAATGT ACGACGTCAA AGACCCAAAC ACTGTATTCG TCTTCAAATT CCGAACACAT TTTGGTGGTG GCAAATCTAC
TGGTTTTGGT TTGATTTATG ATTCAGTCGA CAATGCAAAG AAGTACGAGC CCAAGTACAG GCTTATCAGG GTGAGTCAAC
AATCAGTAAC CTTACCTGAC TTTATTTAGC CTGAAATTTT GTGTTTTGTG ATCTCATTTT GTTAATGCAA TATCACTGTT
ACTGTTATTT TTCCTTACAT TATTGCTATC ACCTGTTCCA GTAATTTTTC CTCCCGGTGA GTCATTTTTA CTGCAAATAC
AGATGTGACA CTGTAATCCA TTTCATTGTT TCAAGACTGT TGCCATTGTT TTAGAAATAA GTATTTAAAC TAGTTTCTTT
GGAGTATAAA GATTGGTTAT AATTTTCTTA AGAAACATTA GATTTATTTA GGTTGGTAAT GGTTACTGTT GCCATCCTGT
TCTTTTTTAC TATGAATTGA TTCCATTATG TTTTATTTTT CGACTTAGTG TTAGCCGCAT TGAATATATT GTCATCTGCG
GTTTTGTTTT CTGTGCTGAA TGAATTTTGT AATATACATG TCTAGCAGCA GCTGCTGCAT CATTTTGTGC TAGCATACTA
ATTTATATCT ATTACAGAAT GGTCTTGACA CTAAGGTAGA AAAGTCGAGG AAACAAATGA AGGAGAGGAA AAACAGAGCA
AAGAAGATTC GTGGAGTAAA GAAGGTAATT TTGTATTAAA TTATAAAATA AATTATAAAA TATCATGATT TGCTTGATTA
AATGATAAAT AAAATATGGC ATGTTTTATT TTGTGCAGAC GAAGGCTTCT GATGCTGCTA AGGCTGGAAA GAAGAAATAA
GATATGAGAA ATCTTATTTC GATTCTAAGG TTATATTGGT TTCGGTGCTT TGTAGTTGTT ATTTTATCTT ATGCTAGAAT
TATAGAATGA GATGTTTTGG CACAAGTGTT GATCCTTATT TTATTTTATG TTTGCTTATA ACTTCATATG TTGAATACTA
GCAATTGAAC AATTTTGAGA GCTCGTGTTT AACTTTGCTT TCTAATATTT GGTAAATCGA GGTAGTGAGT TATTTTGCGT
AATCTTATAG AATACCATTA AAGTTCAACT GAGTAAGTGT TTTTATTCAT CAATTCTGTA TACCTTTTCG ATTCAG

>Vigan.05G141500.01
AGTGTGCGTG TTGTGGAGCT GCTGTAACCG CATCTGTGTG AAGTTCTTCG GTGCCAAACC TCACCCAACA GTATGGCGGA
CAAGGCTGTT ACAATCCGAA CTCGCAAGTT CATGACTAAC AGGCTTCTTT CCAGGAAGCA GTTTGTTGTG GACGTACTTC
ATCCAGGGAG GGCAAATGTT TCCAAGGCTG AACTCAAGGA GAAGCTTGCT AGAATGTACG ACGTCAAAGA CCCAAACACT
GTATTCGTCT TCAAATTCCG AACACATTTT GGTGGTGGCA AATCTACTGG TTTTGGTTTG ATTTATGATT CAGTCGACAA
TGCAAAGAAG TACGAGCCCA AGTACAGGCT TATCAGGAAT GGTCTTGACA CTAAGGTAGA AAAGTCGAGG AAACAAATGA
AGGAGAGGAA AAACAGAGCA AAGAAGATTC GTGGAGTAAA GAAGACGAAG GCTTCTGATG CTGCTAAGGC TGGAAAGAAG
AAATAAGATA TGAGAAATCT TATTTCGATT CTAAGGTTAT ATTGGTTTCG GTGCTTTGTA GTTGTTATTT TATCTTATGC
TAGAATTATA GAATGAGATG TTTTGGCACA AGTGTTGATC CTTATTTTAT TTTATGTTTG CTTATAACTT CATATGTTGA
ATACTAGCAA TTGAACAATT TTGAGAGCTC GTGTTTAACT TTGCTTTCTA ATATTTGGTA AATCGAGGTA GTGAGTTATT
TTGCGTAATC TTATAGAATA CCATTAAAGT TCAACTGAGT AAGTGTTTTT ATTCATCAAT TCTGTATACC TTTTCGATTC
AG

>Vigan.05G141500.01
ATGGCGGACA AGGCTGTTAC AATCCGAACT CGCAAGTTCA TGACTAACAG GCTTCTTTCC AGGAAGCAGT TTGTTGTGGA
CGTACTTCAT CCAGGGAGGG CAAATGTTTC CAAGGCTGAA CTCAAGGAGA AGCTTGCTAG AATGTACGAC GTCAAAGACC
CAAACACTGT ATTCGTCTTC AAATTCCGAA CACATTTTGG TGGTGGCAAA TCTACTGGTT TTGGTTTGAT TTATGATTCA
GTCGACAATG CAAAGAAGTA CGAGCCCAAG TACAGGCTTA TCAGGAATGG TCTTGACACT AAGGTAGAAA AGTCGAGGAA
ACAAATGAAG GAGAGGAAAA ACAGAGCAAA GAAGATTCGT GGAGTAAAGA AGACGAAGGC TTCTGATGCT GCTAAGGCTG
GAAAGAAGAA ATAA

>Vigan.05G141500.01
MADKAVTIRT RKFMTNRLLS RKQFVVDVLH PGRANVSKAE LKEKLARMYD VKDPNTVFVF KFRTHFGGGK STGFGLIYDS
VDNAKKYEPK YRLIRNGLDT KVEKSRKQMK ERKNRAKKIR GVKKTKASDA AKAGKKK*