GBrowse Details

Vigan.05G136400.01

Basic Information:
Name: Vigan.05G136400.01
Multiple alignment
Variant Information
Position: Chr05:11093743..11096424 (+ strand)
Length: 2682
Functional Information:
Description: Similar to Profilin family protein. [XP_007040899.1, Theobroma cacao]
GO: Biological Process: actin cytoskeleton organization (GO:0030036)
Molecular Function: actin binding (GO:0003779)
InterPro: Profilin (IPR005455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.50,11.21,21.63,13.43,18.68,19.79,16.06,14.06
Arabidopsis thaliana homolog: AT4G19400.1
Automatic updates:
Name: NM_001254193 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100802211 (LOC100802211), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:11093743..11093749 (+ strand)
Length: 7
Type: five_prime_UTR
Position: Chr05:11093750..11093813 (+ strand)
Length: 64
Type: CDS
Position: Chr05:11093954..11094023 (+ strand)
Length: 70
Type: CDS
Position: Chr05:11095405..11095514 (+ strand)
Length: 110
Type: CDS
Position: Chr05:11095855..11095969 (+ strand)
Length: 115
Type: CDS
Position: Chr05:11096057..11096141 (+ strand)
Length: 85
Type: CDS
Position: Chr05:11096142..11096424 (+ strand)
Length: 283
Type: three_prime_UTR

>Vigan.05G136400.01 class=Sequence position=Chr05:11093743..11096424 (+ strand)
CGACTCAATG GATTGGGCGT TCGTGCATAA AACATGGGAT AAGTGGGCTT CTACCAACGT TGGGTATTCT GGTTAGCTAG
ATTTTGCTTT CAAGCCACAT TCATATGCAC ATATGTATTC TTTTGTTACA TCACCCTTTG GAAAATTAAT TTTGTAAATA
CTGTAATTTG GTGATATTTA TCTCGTGTTC TAAACATCCT ACTACTTCTA GGTCATCCGT TAAAAGCTGC TTTGCTAATC
AACCATGACC CCACTGGACC ATCTCGATTG TTATCTACCA TGTAAGAAGG ATTGTGTTTG ATTCTTGTTA TGTTTTTTTT
TTTTTATATC TGGTGTGATT TTTCTTTATG ATGGAAAAGC ACATGGAATG AATAAGCAAT GCAAATCGGT TGCCTACAGT
CTATGGTATA AATAATTGAA GCTCTTATCT TGCAGTTTAT ATGAGTTTTT ATTCATATTG AACTTGTACG AGTTATGAAT
CAACCATCTT ACCCTGGAAT TCCACGATAA TACCATTTTA TGTTGATCAT AAAAATTTTC ATTGGTACCA GTGTTTATTT
AGCTATTTTG GATGAAAAAC TGTATATTCT GGTTGTGCTC TGATAAGGGT TAACCTTGCG AGTAAGATTT TGCCATTGTT
ATTGCTCCAA GAACCTGAAC TACTTCGAAC AATAAAACAA GGGCCACTGT TGTTGCTTGA AACGTACTTG AATGAATGCT
TCATCAAGTA CCCCAAATTA GCCTCATGAA GCACGGATAC TCCTTGTACT TAAGGTGTCA AGAGTATCAA ACACGTTTTC
AAAATCGACT CCTCCTTTAC ACCTGTATGA CGATGTATCG GACATTAAGC ACTAGTTCTA TTTTTTTTTT TTGTTGGCTC
AGACACTTGA GCTGATATCT CCATATGACT ATTCTCGTCA AAGAGATCAA CATTGTAAAA GTAATCAATT TTTAAACATT
TAAAAAGCTC TCTCAGAATA TAATATAAAT TAAAATGATT GCCCTTTTCA TTGTTCTCAG CACGACTCAT TATCATAAGG
AAAGTGTAAA ACTTAGAAAG TTATTTTTTT TGAGAAGGTA ATATACATTT GCTGATAGAT AATTAATTTT CTCGTTTTTG
GGATTATTCA TTGAGAGCAA AGTGCTTCAT TTTAAATCTT GATTAGCAAT TACATCTTTT TTCATGTTTG TATTTAGTTT
CATTTGATTA TATTTATATA TGGATGTCCT AGTGTCAAAT ATTTTAAACA TAAGCCATGT TGTAATGAAT CAGTGCTTTG
TAAGCCGTGC AGATTCTTCT TGTTGCTCCT TCTTCTTCAG TAGTTTATAG CAGGTTCATT CCTTAGGATC AAATGCAATG
TCCTGCCCGG TTAATATCAC TGTATCGATT CAGCAAAGCT GCTACTGTTA CATTATATTT TTTAATCCAA AAGCAAAAGT
AGTTGTGACA TTGTAAGTTG TTTTGTGTTT TTGTTTGAAA ATCTCTTTTT AATTTTTAAT ACTGTATGTG GTTGAGGAGA
TTTAAGTATT TGTTTCTGAA AAATTTGTGC ACATTTCCTC CTAAACTTCA TGCTTGCTTT GTGTGGCACT TCTTTAGCTG
GAATTTTCTT TTTTATTTCT AAAAATATTG AATTTCTCAA TTGAGCTATT TGGTGCTGGC AGTGCTGCAC AAGAAGGAAT
AAAAGCTAAT CCCATTGAAT TGAGTAACTT TATGGACTTC ATCAAACAAA ATAAGCTCCA TACAGAGCTC TTCGTTATTG
GATCCAATCA GTGTAAGCTC AAACTCAGCT GTATTTAGTT TGCCTATATA ATTAGTTGCG GCTTTCTGTT TTTCAACTTC
TTTTATGCCC TCTACCGTAA GGACATATGA AATTTCTGAA ACTGAAGACT ACAACATATC TAAGTAATAT GAGTTTAAGA
CTCTTAGAGA TTTGGGCTAT GGTACAATTC TTGGAGCATG ATGGTCTTGA TACTTGTTTT AGACTGTTTA CTGTTGAGAG
ATAATAAACT GTGTTCTACT CGTACATGTA TAGTTATGAA CTGTGTAACT TTATCTGCTA CAGTGGTGCA TTTTAGTTTA
TCTTCTGATA TTTACGGAAA TTTGAATGAC AGACTTGGTC ACAACAATTC ATGAGAACTG GTTTAGTGCA AGGTGTATAA
ACACGTCAAA GCCCGCTGGT GAAGGTGTTA TTGTTATACA AACAGCAGCA TACATCTTGG TTGCTCTGTA AGCATATAAT
TCAAATTCAG TATGTTTATC ATCGACCATC AATGCACTAT TCTGTCTGCG TATTCTCATC ATTCAGTTTC ACAGGTATGA
AGGTTCCATC GGTCCAGCAT CTCGTGCTAT GGCAGCTGCT GATCAGTTAA CTTGGCAATT AGGACGAAAA AATCTTTAAA
CTGGTCCTGC AGATCTGTAG CATCCACTAA CCACAAGGCT AATCTTTTCT GTTTTCACTC CAATTTTTTC TCAGATGATT
GCACCCATGT ATCTTGGTGA TGAAGCCATT GCCATTACAC AACCACATAG ATGACAGTGT ACGAGAGAGG TCTTAACCCT
TGTTGTGTAT TATTGGTTCA TCTCAACCAT TAATATTAAA TTAAGAACAA CGAATATTCA TGTTTTATAT AGGCTTGAAC
AAAATTATTT TAAATATCAA ATGATTGCTA CAGTTGATTT CA

>Vigan.05G136400.01
CGACTCAATG GATTGGGCGT TCGTGCATAA AACATGGGAT AAGTGGGCTT CTACCAACGT TGGGTATTCT GGTCATCCGT
TAAAAGCTGC TTTGCTAATC AACCATGACC CCACTGGACC ATCTCGATTG TTATCTACCA TTGCTGCACA AGAAGGAATA
AAAGCTAATC CCATTGAATT GAGTAACTTT ATGGACTTCA TCAAACAAAA TAAGCTCCAT ACAGAGCTCT TCGTTATTGG
ATCCAATCAG TACTTGGTCA CAACAATTCA TGAGAACTGG TTTAGTGCAA GGTGTATAAA CACGTCAAAG CCCGCTGGTG
AAGGTGTTAT TGTTATACAA ACAGCAGCAT ACATCTTGGT TGCTCTGTAT GAAGGTTCCA TCGGTCCAGC ATCTCGTGCT
ATGGCAGCTG CTGATCAGTT AACTTGGCAA TTAGGACGAA AAAATCTTTA AACTGGTCCT GCAGATCTGT AGCATCCACT
AACCACAAGG CTAATCTTTT CTGTTTTCAC TCCAATTTTT TCTCAGATGA TTGCACCCAT GTATCTTGGT GATGAAGCCA
TTGCCATTAC ACAACCACAT AGATGACAGT GTACGAGAGA GGTCTTAACC CTTGTTGTGT ATTATTGGTT CATCTCAACC
ATTAATATTA AATTAAGAAC AACGAATATT CATGTTTTAT ATAGGCTTGA ACAAAATTAT TTTAAATATC AAATGATTGC
TACAGTTGAT TTCA

>Vigan.05G136400.01
ATGGATTGGG CGTTCGTGCA TAAAACATGG GATAAGTGGG CTTCTACCAA CGTTGGGTAT TCTGGTCATC CGTTAAAAGC
TGCTTTGCTA ATCAACCATG ACCCCACTGG ACCATCTCGA TTGTTATCTA CCATTGCTGC ACAAGAAGGA ATAAAAGCTA
ATCCCATTGA ATTGAGTAAC TTTATGGACT TCATCAAACA AAATAAGCTC CATACAGAGC TCTTCGTTAT TGGATCCAAT
CAGTACTTGG TCACAACAAT TCATGAGAAC TGGTTTAGTG CAAGGTGTAT AAACACGTCA AAGCCCGCTG GTGAAGGTGT
TATTGTTATA CAAACAGCAG CATACATCTT GGTTGCTCTG TATGAAGGTT CCATCGGTCC AGCATCTCGT GCTATGGCAG
CTGCTGATCA GTTAACTTGG CAATTAGGAC GAAAAAATCT TTAA

>Vigan.05G136400.01
MDWAFVHKTW DKWASTNVGY SGHPLKAALL INHDPTGPSR LLSTIAAQEG IKANPIELSN FMDFIKQNKL HTELFVIGSN
QYLVTTIHEN WFSARCINTS KPAGEGVIVI QTAAYILVAL YEGSIGPASR AMAAADQLTW QLGRKNL*