GBrowse Details

Vigan.05G135000.01

Basic Information:
Name: Vigan.05G135000.01
Multiple alignment
Variant Information
Position: Chr05:11002996..11005112 (- strand)
Length: 2117
Functional Information:
Description: Similar to Uncharacterized protein. [I1NCD2, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.76,1.65,1.08,0.51,0.74,0.00,2.28,0.61
Automatic updates:
Name: NM_001250798 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max myb-related protein Myb4 (LOC778176), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:11002996..11003178 (- strand)
Length: 183
Type: three_prime_UTR
Position: Chr05:11003179..11003590 (- strand)
Length: 412
Type: CDS
Position: Chr05:11003788..11003917 (- strand)
Length: 130
Type: CDS
Position: Chr05:11004012..11004141 (- strand)
Length: 130
Type: CDS
Position: Chr05:11004142..11005112 (- strand)
Length: 971
Type: five_prime_UTR

>Vigan.05G135000.01 class=Sequence position=Chr05:11002996..11005112 (- strand)
GACAATTTTA TTATTGAAAT ATTAAAAATA AGTAGTATAT AGATATATTT TTTTATTGAG AAATAAGAAC GATATTTAAA
ATATTATAAT TTTTAATAAT TTTCAAGAAA TCGTTATTTT TTTTCCTCGC GAAGAAGAGG GGAAAGAGCA TTTGCATGGA
TTCAAAGCCC GTAATCTTCT TCTTGATCAT CAATGGTAGT GCGCAGAACA GTGAGTTCAA CGTTTTATGT GTGTAATAAT
TAAGAATATT AGGAAGATTT GAATAATTTG ATAAATTTTG AGCACTGTTT TTTCATGTAT ATATTCTGTA GCTAACATGT
TTGTTGTTAT ACGTGACTGG GAGAATCGAA AATTGGGGAA AAAGAAAAGC ATTAGATTGA AGATAGTAAC TAGCACTTCA
CGGGGACAAT GGAAAGAGGC GGCAGAAACA GTAAGAAAAC ATGATCAAGA AGTGCATAAT GTTCCTGCCG CGCGCATACT
ACTTTTGACC TATCTGCCCA AAACAATCAT TACTTTTAGC CTTTACCAGA TGCCCTAAGT TTACAAGAGA AGCAACCTGG
AAACTCCTTT GGAGTTGGAT TCTACAAACC AATGCTACTT TCTCACACAA TGCATATAAA ATTATGGGAG CAGTTTCTCT
AGTGCTACAT CTCTCTAAAC ATCATTACAA ATCTGATTAT GTGTATTTTT TTAATTTCAT TTCAACAGTT TCTGTGTGCG
TGCGTGCTTT AGTTTGGAAT TTTATCACAC AAAAGGGGAT GTCATCGATC ATGTGATCAC TATCATGCAC TTTTGTTTTG
AAAGCCATGC TGTTTATTTG GACCACATGT TCATTTTCTC TGGTATAGTA ATCATAAAGG AACCGAAGCT ACCTTGAAAG
AGCTTAAGCG GCCACCAAAG TTATTACTAC TCCATAGTAC AGAGGAAAAG GACACACATT ATTGTGTTGT GCTGTGAAGC
AAGCGGTTAC TATGAAGACT CCTTGCTGTG AGAGAATGGG AATGAAGAAG GGACCTTGGA CTGCAGAGGA AGATCATATA
TTGGTTTCTC ATATTCAACG ATATGGCCAT GGTAACTGGC GTGCCCTTCC TAAACAAGCT GGTAAGTTCT TCTTCTAGTT
AGCAACATTT TCTCTGTAAA CCGGTAAAGG TTAAACAAAC ATATGTATGA TTATATGATA TGGTTGTTTA ATCAGGATTG
TTAAGGTGTG GCAAGAGTTG CAGGCTTCGT TGGATTAATT ACCTAAGGCC AGATATTAAA CGAGGGAAAT TCAGCAAGGA
AGAAGAAGAT ACCATCCTAA AGCTGCATGA AATTCTTGGA AATAGGTGGG CATCTAATAA CATGTATTCA TTCTAATGTC
TTCTGCTGGT TCTTTCTATT GTCTTCCCTA CGTGCATGAA ACACCATGAA TATGATTTCC TAGTATTATT ATGATTTAAT
GTAAGAGATG TAATTAACAC GTATAGGCTG AATTTGGTTA AGAAAATGTG AAAATTTGAT GGTGATCACC CTTGATGCTT
AGGTGGTCTG CTATAGCGAC AAGCTTACCC GGAAGAACAG ACAACGAAAT AAAGAATTTT TGGCATACCC ATTTGAAGAA
GAGGATCCAA AAAAGTGGAG TGCATATAAA TGGCAATGCT TCATCGCATA TCCTGCAAGA GGCACAAGCA AATAGTTCAT
CAAGTTCAGG TGCAGTTTCT AGTGCCTATG GAAATGTAAT GCTTGACAAT TACGGTTTAC CCTCAAGGAA GAATCCAATC
AATCCACCTA CTGTAGGTAC TGGATTTTAT GGTGCAGTCT CCTCAGATAC TTTTGGAGAA ACTGAGGACA GTCATGATTC
TTGTCAGCTA AGTGAAGAAA TGGAGTTTTG GTACAATATA TTCATCAAAT CAGGGCAAAC ATCACGAGAC AATGAAAATC
TAGGACATTA TTAGGATGCA TGATATATAG TTTGTCTATC AGCTTACAGA TGTCAAGTCA ACCTTTGGTT TCAGCTTAAT
TGGTGTTTGT GTAAAAAAAC TTAAAATCCT TTTTGGAGTT TCAAATCGGA AAACTAAAGA TGAATGAATA ATTTTGTTAA
TAAAATCTGG ATAAGAGTTG GGCAGTTATA ATACAAA

>Vigan.05G135000.01
GACAATTTTA TTATTGAAAT ATTAAAAATA AGTAGTATAT AGATATATTT TTTTATTGAG AAATAAGAAC GATATTTAAA
ATATTATAAT TTTTAATAAT TTTCAAGAAA TCGTTATTTT TTTTCCTCGC GAAGAAGAGG GGAAAGAGCA TTTGCATGGA
TTCAAAGCCC GTAATCTTCT TCTTGATCAT CAATGGTAGT GCGCAGAACA GTGAGTTCAA CGTTTTATGT GTGTAATAAT
TAAGAATATT AGGAAGATTT GAATAATTTG ATAAATTTTG AGCACTGTTT TTTCATGTAT ATATTCTGTA GCTAACATGT
TTGTTGTTAT ACGTGACTGG GAGAATCGAA AATTGGGGAA AAAGAAAAGC ATTAGATTGA AGATAGTAAC TAGCACTTCA
CGGGGACAAT GGAAAGAGGC GGCAGAAACA GTAAGAAAAC ATGATCAAGA AGTGCATAAT GTTCCTGCCG CGCGCATACT
ACTTTTGACC TATCTGCCCA AAACAATCAT TACTTTTAGC CTTTACCAGA TGCCCTAAGT TTACAAGAGA AGCAACCTGG
AAACTCCTTT GGAGTTGGAT TCTACAAACC AATGCTACTT TCTCACACAA TGCATATAAA ATTATGGGAG CAGTTTCTCT
AGTGCTACAT CTCTCTAAAC ATCATTACAA ATCTGATTAT GTGTATTTTT TTAATTTCAT TTCAACAGTT TCTGTGTGCG
TGCGTGCTTT AGTTTGGAAT TTTATCACAC AAAAGGGGAT GTCATCGATC ATGTGATCAC TATCATGCAC TTTTGTTTTG
AAAGCCATGC TGTTTATTTG GACCACATGT TCATTTTCTC TGGTATAGTA ATCATAAAGG AACCGAAGCT ACCTTGAAAG
AGCTTAAGCG GCCACCAAAG TTATTACTAC TCCATAGTAC AGAGGAAAAG GACACACATT ATTGTGTTGT GCTGTGAAGC
AAGCGGTTAC TATGAAGACT CCTTGCTGTG AGAGAATGGG AATGAAGAAG GGACCTTGGA CTGCAGAGGA AGATCATATA
TTGGTTTCTC ATATTCAACG ATATGGCCAT GGTAACTGGC GTGCCCTTCC TAAACAAGCT GGATTGTTAA GGTGTGGCAA
GAGTTGCAGG CTTCGTTGGA TTAATTACCT AAGGCCAGAT ATTAAACGAG GGAAATTCAG CAAGGAAGAA GAAGATACCA
TCCTAAAGCT GCATGAAATT CTTGGAAATA GGTGGTCTGC TATAGCGACA AGCTTACCCG GAAGAACAGA CAACGAAATA
AAGAATTTTT GGCATACCCA TTTGAAGAAG AGGATCCAAA AAAGTGGAGT GCATATAAAT GGCAATGCTT CATCGCATAT
CCTGCAAGAG GCACAAGCAA ATAGTTCATC AAGTTCAGGT GCAGTTTCTA GTGCCTATGG AAATGTAATG CTTGACAATT
ACGGTTTACC CTCAAGGAAG AATCCAATCA ATCCACCTAC TGTAGGTACT GGATTTTATG GTGCAGTCTC CTCAGATACT
TTTGGAGAAA CTGAGGACAG TCATGATTCT TGTCAGCTAA GTGAAGAAAT GGAGTTTTGG TACAATATAT TCATCAAATC
AGGGCAAACA TCACGAGACA ATGAAAATCT AGGACATTAT TAGGATGCAT GATATATAGT TTGTCTATCA GCTTACAGAT
GTCAAGTCAA CCTTTGGTTT CAGCTTAATT GGTGTTTGTG TAAAAAAACT TAAAATCCTT TTTGGAGTTT CAAATCGGAA
AACTAAAGAT GAATGAATAA TTTTGTTAAT AAAATCTGGA TAAGAGTTGG GCAGTTATAA TACAAA

>Vigan.05G135000.01
ATGAAGACTC CTTGCTGTGA GAGAATGGGA ATGAAGAAGG GACCTTGGAC TGCAGAGGAA GATCATATAT TGGTTTCTCA
TATTCAACGA TATGGCCATG GTAACTGGCG TGCCCTTCCT AAACAAGCTG GATTGTTAAG GTGTGGCAAG AGTTGCAGGC
TTCGTTGGAT TAATTACCTA AGGCCAGATA TTAAACGAGG GAAATTCAGC AAGGAAGAAG AAGATACCAT CCTAAAGCTG
CATGAAATTC TTGGAAATAG GTGGTCTGCT ATAGCGACAA GCTTACCCGG AAGAACAGAC AACGAAATAA AGAATTTTTG
GCATACCCAT TTGAAGAAGA GGATCCAAAA AAGTGGAGTG CATATAAATG GCAATGCTTC ATCGCATATC CTGCAAGAGG
CACAAGCAAA TAGTTCATCA AGTTCAGGTG CAGTTTCTAG TGCCTATGGA AATGTAATGC TTGACAATTA CGGTTTACCC
TCAAGGAAGA ATCCAATCAA TCCACCTACT GTAGGTACTG GATTTTATGG TGCAGTCTCC TCAGATACTT TTGGAGAAAC
TGAGGACAGT CATGATTCTT GTCAGCTAAG TGAAGAAATG GAGTTTTGGT ACAATATATT CATCAAATCA GGGCAAACAT
CACGAGACAA TGAAAATCTA GGACATTATT AG

>Vigan.05G135000.01
MKTPCCERMG MKKGPWTAEE DHILVSHIQR YGHGNWRALP KQAGLLRCGK SCRLRWINYL RPDIKRGKFS KEEEDTILKL
HEILGNRWSA IATSLPGRTD NEIKNFWHTH LKKRIQKSGV HINGNASSHI LQEAQANSSS SSGAVSSAYG NVMLDNYGLP
SRKNPINPPT VGTGFYGAVS SDTFGETEDS HDSCQLSEEM EFWYNIFIKS GQTSRDNENL GHY*