GBrowse Details

Vigan.05G114500.01

Basic Information:
Name: Vigan.05G114500.01
Multiple alignment
Variant Information
Position: Chr05:9037870..9040393 (+ strand)
Length: 2524
Functional Information:
Description: Similar to Protein phosphatase 2C 13-like protein. [T2DN72, Phaseolus vulgaris]
GO: Biological Process: protein dephosphorylation (GO:0006470)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: protein serine/threonine phosphatase activity (GO:0004722)
InterPro: Protein phosphatase 2C, manganese/magnesium aspartate binding site (IPR000222)
Protein phosphatase 2C (PP2C)-like domain (IPR001932)
Protein phosphatase 2C (IPR015655)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.62,19.05,4.35,5.40,8.89,7.13,5.59,4.43
Arabidopsis thaliana homolog: AT1G48040.1
Automatic updates:
Name: NM_001317700 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable protein phosphatase 2C 13 (LOC100798957), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:9037870..9038063 (+ strand)
Length: 194
Type: five_prime_UTR
Position: Chr05:9038064..9038252 (+ strand)
Length: 189
Type: CDS
Position: Chr05:9038899..9039894 (+ strand)
Length: 996
Type: CDS
Position: Chr05:9039895..9040393 (+ strand)
Length: 499
Type: three_prime_UTR

>Vigan.05G114500.01 class=Sequence position=Chr05:9037870..9040393 (+ strand)
GAGGCGAAAG AAAACAAATA AAAACGCACG AAAGCAAACG GGAAATTCTG TTGTTAAGAG CTCTCAGAAA AAAAGGAAAA
CCCTAATTGG AAACGCTTTC GCAATCCCTA AACCGTAGCC CCAGTGATCC GTTGCAGTGG TTTTGGAAGA GGCGAGCTAA
ACGCGGTGTC TTGGCGATCA TCGTGAGCAA GAACATGGTC GTAGAAACGG AAATCATCTG CCAGAAGAGC ATGCCCATGC
TGGACGTGAA GTACCACCTT TGCGTGGCGC AAGAACACGG TGTTAAGGTT GATGTTTCGC CCACCTCCAA CGTTGTTCCC
ATCTTCGGTC ACGTGAGGGT TGCCGCCGAA TCTGTTTCTA CGGAAACGAC TCGTTTTGAA TCGGTGGGTA CTTCTGGGTT
CCCTTTTTTT CCTGAATTTT TTTATTGTCT TTTTTATTCT TTCGGTGTTT GATTTCTTTT CTCCTTTTTC TGAGATTCCT
TCTTGGGATT TGGTTTTGTT TCTATTCGGT GTAAAAAGTG GTGTTTCGTT TTATTTTGGT GTCGGTTTTC TCTTGGAAGT
TGAATCGGTT GATTTTAAAT TTTCCCTTTT GATTTCCCTT TCTATGCATT AGTCGGTGTG CATTTATCTA CGTGTTCTTG
CTCGTTATTT TGCTTGTTAG ATTTGGGGGC GGGGAGATTA AATTTTCGTG TGGAATGGTT GTGGGGGTTC CAGAAGCAGT
AATTATTTTG ACAGGATTTT GAATCGGGTG TTTCTATAAT TTGTTTTCCC TATACCTTGC GTAAAGAGTA ATAAGAAAAC
ATACTTTGTT TATTGTGTTT TAAACATTTG TCCCTCGGTG AAATCAGGTG GTGCAACTGG TGTTAATGTT AGTTTGTATT
TCAATTGGTT CAATTATGAT AGGATTTATT AGTATAAGAA GCGTAGAAGC AATTCTTGTG ATTTGTCTGT ATATCTTTGT
TTCATAATTT CCCTTAACCT AAATGAATTG CATATTTTTG TGCTGACTAA TGTCTTGTGT GTTTCTTAGG CTGTGAGTTT
GCCTGAGATG ATTGGAGATT CAAGTTTAGA GGCTCCTGCT ACTAAGTTTA CACCAGATGT GCGATCTGGC TGTTGTGCTG
ATATTGGACC CAGGGGGTCT ATGGATGATG AGCACATTCA GATAGATGAT CTAGCTGCGC ACCTTGGATT CAACTTTGAG
CATCCTATGG CAAGTGCTTT TTATGCAGTT TTTGATGGGC ATGGAGGGCC AGATGCTGCT GCCTTTGTTA AAAACAACGC
TATGAGATTA TTTTTTGAAG ATGCTCATAT GCTGCAATCA TACGATGCTG ATGCGCTTTT TCTGAAGAGG TTGGAAGATT
CTCATCGAAA GGCGTTTTTG GGAGCAGACA TTACCTTGGC TGATGAACGA AGTGTTAGTA GTTCATGTGG AACAACGGCG
TTGACTGCTC TTGTACTCGG GAGGTATTTG ATGGTTGCTA ATGCTGGGGA CTGTAGAGCT GTTCTTTGTA AGCGAGGCGT
AGCTGTTGAT ATGTCCCAAG ATCACAGACC GAGTTATTTA CCAGAACGCA GGAGAGTGGA GGAGATGGGT GGTTATATTG
ATGATGGGTA TCTCAATGGT CATCTTTCTG TGACTCGTGC TCTTGGGGAT TGGGACTTGA AAAATGCACT TGGTTCTGTG
TCGCCTCTTA TTGCCGACCC GGATGTTCAG GTGGTCACAT TGACAGAGGA GGATGAGTTC TTGATCATTG GTTGTGATGG
TATTTGGGAT GTACTGTCAA GCCAGGATGC TGTTAGTCTG GTGCGGCGTG GATTAAGAAG GCATGACGAT CCTGAACAAT
GTGCCAGAGA GCTAGTTAAG GAAGCTTTGC GCCTACACTC CTCAGATAAT CTTACTGCGA TTGTTATCTG CTTGTCCCCT
GTCCAGATTG TTGAGTCTTG TCTACCCCAA AGGCGAAGAT TCAGATTTTG CTCCCTGTCT GAAGAGGCCC GGAACAGGTT
GAGGAGTTTG CTAGAGGGAA ACTGAATGTA AATATGGTTT GCACGATTCA CAATCATTCC TTTCATGAAA AGATTGATTC
GTGTTTGTAG GCTGTTTTAG GTTTAGAGCC AAGCAGTCAA CAGTTTTGTA GTGATAGAAA AGGATAATTG TTGGGAGTTT
AGAACTATTT AATTTAGGGA ATTTATCTCG GTTATTTTGG TGGATGTTGA GAAACAAGTA GCTAGCTAAT TTTGGCGGGA
ACACTGGAGG ATTTGATTTC AGATCATTGT TAGATCTGTA TTTTATGAGA TGATTTAGAC TTCTCAGCAA GGATGTAGGT
GAATGCATCG ACCAAACTAG TTATTTTCTT GACTGTTGCA TTCAACAGAG ATTTGTTTAT GGGATGAGAT AGTTGGGTAG
AGGGCACGTT TCAGCCTATA TGCAGCCTAT ATGATTTTTT CTCTCTACAC GTTTACTTCT AATTCTCTCA AACTCTCAAG
TGCTATCAGA GTCAAGGCGC TGGAAAATAC AATTTCATAT GAAC

>Vigan.05G114500.01
GAGGCGAAAG AAAACAAATA AAAACGCACG AAAGCAAACG GGAAATTCTG TTGTTAAGAG CTCTCAGAAA AAAAGGAAAA
CCCTAATTGG AAACGCTTTC GCAATCCCTA AACCGTAGCC CCAGTGATCC GTTGCAGTGG TTTTGGAAGA GGCGAGCTAA
ACGCGGTGTC TTGGCGATCA TCGTGAGCAA GAACATGGTC GTAGAAACGG AAATCATCTG CCAGAAGAGC ATGCCCATGC
TGGACGTGAA GTACCACCTT TGCGTGGCGC AAGAACACGG TGTTAAGGTT GATGTTTCGC CCACCTCCAA CGTTGTTCCC
ATCTTCGGTC ACGTGAGGGT TGCCGCCGAA TCTGTTTCTA CGGAAACGAC TCGTTTTGAA TCGGCTGTGA GTTTGCCTGA
GATGATTGGA GATTCAAGTT TAGAGGCTCC TGCTACTAAG TTTACACCAG ATGTGCGATC TGGCTGTTGT GCTGATATTG
GACCCAGGGG GTCTATGGAT GATGAGCACA TTCAGATAGA TGATCTAGCT GCGCACCTTG GATTCAACTT TGAGCATCCT
ATGGCAAGTG CTTTTTATGC AGTTTTTGAT GGGCATGGAG GGCCAGATGC TGCTGCCTTT GTTAAAAACA ACGCTATGAG
ATTATTTTTT GAAGATGCTC ATATGCTGCA ATCATACGAT GCTGATGCGC TTTTTCTGAA GAGGTTGGAA GATTCTCATC
GAAAGGCGTT TTTGGGAGCA GACATTACCT TGGCTGATGA ACGAAGTGTT AGTAGTTCAT GTGGAACAAC GGCGTTGACT
GCTCTTGTAC TCGGGAGGTA TTTGATGGTT GCTAATGCTG GGGACTGTAG AGCTGTTCTT TGTAAGCGAG GCGTAGCTGT
TGATATGTCC CAAGATCACA GACCGAGTTA TTTACCAGAA CGCAGGAGAG TGGAGGAGAT GGGTGGTTAT ATTGATGATG
GGTATCTCAA TGGTCATCTT TCTGTGACTC GTGCTCTTGG GGATTGGGAC TTGAAAAATG CACTTGGTTC TGTGTCGCCT
CTTATTGCCG ACCCGGATGT TCAGGTGGTC ACATTGACAG AGGAGGATGA GTTCTTGATC ATTGGTTGTG ATGGTATTTG
GGATGTACTG TCAAGCCAGG ATGCTGTTAG TCTGGTGCGG CGTGGATTAA GAAGGCATGA CGATCCTGAA CAATGTGCCA
GAGAGCTAGT TAAGGAAGCT TTGCGCCTAC ACTCCTCAGA TAATCTTACT GCGATTGTTA TCTGCTTGTC CCCTGTCCAG
ATTGTTGAGT CTTGTCTACC CCAAAGGCGA AGATTCAGAT TTTGCTCCCT GTCTGAAGAG GCCCGGAACA GGTTGAGGAG
TTTGCTAGAG GGAAACTGAA TGTAAATATG GTTTGCACGA TTCACAATCA TTCCTTTCAT GAAAAGATTG ATTCGTGTTT
GTAGGCTGTT TTAGGTTTAG AGCCAAGCAG TCAACAGTTT TGTAGTGATA GAAAAGGATA ATTGTTGGGA GTTTAGAACT
ATTTAATTTA GGGAATTTAT CTCGGTTATT TTGGTGGATG TTGAGAAACA AGTAGCTAGC TAATTTTGGC GGGAACACTG
GAGGATTTGA TTTCAGATCA TTGTTAGATC TGTATTTTAT GAGATGATTT AGACTTCTCA GCAAGGATGT AGGTGAATGC
ATCGACCAAA CTAGTTATTT TCTTGACTGT TGCATTCAAC AGAGATTTGT TTATGGGATG AGATAGTTGG GTAGAGGGCA
CGTTTCAGCC TATATGCAGC CTATATGATT TTTTCTCTCT ACACGTTTAC TTCTAATTCT CTCAAACTCT CAAGTGCTAT
CAGAGTCAAG GCGCTGGAAA ATACAATTTC ATATGAAC

>Vigan.05G114500.01
ATGGTCGTAG AAACGGAAAT CATCTGCCAG AAGAGCATGC CCATGCTGGA CGTGAAGTAC CACCTTTGCG TGGCGCAAGA
ACACGGTGTT AAGGTTGATG TTTCGCCCAC CTCCAACGTT GTTCCCATCT TCGGTCACGT GAGGGTTGCC GCCGAATCTG
TTTCTACGGA AACGACTCGT TTTGAATCGG CTGTGAGTTT GCCTGAGATG ATTGGAGATT CAAGTTTAGA GGCTCCTGCT
ACTAAGTTTA CACCAGATGT GCGATCTGGC TGTTGTGCTG ATATTGGACC CAGGGGGTCT ATGGATGATG AGCACATTCA
GATAGATGAT CTAGCTGCGC ACCTTGGATT CAACTTTGAG CATCCTATGG CAAGTGCTTT TTATGCAGTT TTTGATGGGC
ATGGAGGGCC AGATGCTGCT GCCTTTGTTA AAAACAACGC TATGAGATTA TTTTTTGAAG ATGCTCATAT GCTGCAATCA
TACGATGCTG ATGCGCTTTT TCTGAAGAGG TTGGAAGATT CTCATCGAAA GGCGTTTTTG GGAGCAGACA TTACCTTGGC
TGATGAACGA AGTGTTAGTA GTTCATGTGG AACAACGGCG TTGACTGCTC TTGTACTCGG GAGGTATTTG ATGGTTGCTA
ATGCTGGGGA CTGTAGAGCT GTTCTTTGTA AGCGAGGCGT AGCTGTTGAT ATGTCCCAAG ATCACAGACC GAGTTATTTA
CCAGAACGCA GGAGAGTGGA GGAGATGGGT GGTTATATTG ATGATGGGTA TCTCAATGGT CATCTTTCTG TGACTCGTGC
TCTTGGGGAT TGGGACTTGA AAAATGCACT TGGTTCTGTG TCGCCTCTTA TTGCCGACCC GGATGTTCAG GTGGTCACAT
TGACAGAGGA GGATGAGTTC TTGATCATTG GTTGTGATGG TATTTGGGAT GTACTGTCAA GCCAGGATGC TGTTAGTCTG
GTGCGGCGTG GATTAAGAAG GCATGACGAT CCTGAACAAT GTGCCAGAGA GCTAGTTAAG GAAGCTTTGC GCCTACACTC
CTCAGATAAT CTTACTGCGA TTGTTATCTG CTTGTCCCCT GTCCAGATTG TTGAGTCTTG TCTACCCCAA AGGCGAAGAT
TCAGATTTTG CTCCCTGTCT GAAGAGGCCC GGAACAGGTT GAGGAGTTTG CTAGAGGGAA ACTGA

>Vigan.05G114500.01
MVVETEIICQ KSMPMLDVKY HLCVAQEHGV KVDVSPTSNV VPIFGHVRVA AESVSTETTR FESAVSLPEM IGDSSLEAPA
TKFTPDVRSG CCADIGPRGS MDDEHIQIDD LAAHLGFNFE HPMASAFYAV FDGHGGPDAA AFVKNNAMRL FFEDAHMLQS
YDADALFLKR LEDSHRKAFL GADITLADER SVSSSCGTTA LTALVLGRYL MVANAGDCRA VLCKRGVAVD MSQDHRPSYL
PERRRVEEMG GYIDDGYLNG HLSVTRALGD WDLKNALGSV SPLIADPDVQ VVTLTEEDEF LIIGCDGIWD VLSSQDAVSL
VRRGLRRHDD PEQCARELVK EALRLHSSDN LTAIVICLSP VQIVESCLPQ RRRFRFCSLS EEARNRLRSL LEGN*