GBrowse Details

Vigan.05G109400.01

Basic Information:
Name: Vigan.05G109400.01
Multiple alignment
Variant Information
Position: Chr05:8576295..8579664 (- strand)
Length: 3370
Functional Information:
Description: Similar to Uncharacterized protein. [I1MG61, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: microtubule-based process (GO:0007017)
Biological Process: protein polymerization (GO:0051258)
Cellular Component: microtubule (GO:0005874)
Cellular Component: protein complex (GO:0043234)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: structural constituent of cytoskeleton (GO:0005200)
Molecular Function: GTP binding (GO:0005525)
InterPro: Tubulin (IPR000217)
Beta tubulin (IPR002453)
Tubulin/FtsZ, GTPase domain (IPR003008)
Tubulin/FtsZ, C-terminal (IPR008280)
Beta tubulin, autoregulation binding site (IPR013838)
Tubulin, conserved site (IPR017975)
Tubulin/FtsZ, 2-layer sandwich domain (IPR018316)
Tubulin, C-terminal (IPR023123)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:37.35,32.90,119.81,92.48,184.28,219.19,123.09,121.64
Arabidopsis thaliana homolog: AT1G20010.1, AT1G75780.1, AT2G29550.1, AT4G20890.1, AT5G12250.1, AT5G23860.1, AT5G44340.1, AT5G62690.1, AT5G62700.1
Automatic updates:
Name: NM_001360303 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tubulin beta chain (TUBB), mRNA.
PubMed ID: 1912487 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:8576295..8577073 (- strand)
Length: 779
Type: three_prime_UTR
Position: Chr05:8577074..8577750 (- strand)
Length: 677
Type: CDS
Position: Chr05:8578598..8578867 (- strand)
Length: 270
Type: CDS
Position: Chr05:8578960..8579353 (- strand)
Length: 394
Type: CDS
Position: Chr05:8579354..8579664 (- strand)
Length: 311
Type: five_prime_UTR

>Vigan.05G109400.01 class=Sequence position=Chr05:8576295..8579664 (- strand)
AAGAAAGTAA AAGGGTAACA TTCTCTGGTG TGGCATCAAC GGTGAGAGAT CAAATTCCAG AACAGTGTCG TTTGGTTTGG
TTCCTTATCA CAATTCACAG CTCAGTACAG CAAAGCACTA TGATTTGAAA AAATCCATTC TATTCCGAAA AAACCCTCAG
GACATGACAC AATTACAAAA CAAACCCGTC CTTCAAGTTA TCCATTCCAT TGACCCCTCT CATTCATTTC CATTTCCTTC
GAAACCAATC TCTAGTTTCT TCAAACCCTA ATTTCCTTTC TCTCACATTC TTGAACACTC GCCAGTCGAA AATGAGAGAA
ATCTTGCACA TCCAGGGAGG CCAATGCGGG AACCAGATCG GAGCCAAGTT CTGGGAGGTC ATCTGCGATG AGCACGGCAT
CGACCACACC GGAAAGTACA GCGGCGACTC CGAGCTCCAA CTCGAACGCA TCAATGTCTA CTATAATGAA GCCAGCGGAG
GAAGGTACGT TCCACGCGCC GTCCTCATGG ATCTTGAACC CGGCACCATG GATTCCGTCA GATCCGGCCC CTTCGGCCAG
ATCTTCCGTC CCGACAACTT TGTCTTCGGC CAGTCCGGCG CCGGCAACAA CTGGGCCAAA GGCCACTACA CTGAAGGGGC
CGAACTCATC GACTCAGTTC TCGACGTCGT TCGCAAGGAA GCCGAAAATT GCGATTGCTT GCAAGGTACC AACGCCACTT
TTAATTTCCC AGTTTCTCAC TAATTTCGAT TGATTTGGTC GTGTTTTGAC GGAACTGGAC TGGTGGTGAC GTGGCAGGGT
TTCAGGTGTG CCATTCTCTT GGTGGTGGAA CGGGTTCCGG CATGGGGACG CTTCTGATCT CAAAGATTCG CGAGGAGTAT
CCAGATCGGA TGATGTTGAC GTTTTCGGTG TTTCCTTCTC CTAAGGTTTC TGACACCGTT GTGGAGCCTT ACAATGCTAC
GCTCTCTGTT CACCAACTAG TAGAGAACGC TGATGAGTGT ATGGTTCTGG ACAATGAGGC TCTCTACGAC ATTTGTTTCA
GGACCCTCAA GCTCGCTACA CCCACCTGTA AGTTTCTGGT TTCTCTTTTT CTTAATCACT TTTTCTTGGT GTTGTTCTGT
CTGTTGTGTG TTGAAAAGAC GAGTAAATGT TTTCTGTTAT TATCTTTTTT TTTAATTTTC AATTTCACGA TTTAAACTAG
GATCAAGTCT GTGAGTGGAT AACACTTCTA AGAAAATAAA ATAAAAACAA AGTAAATTTA ACTTCTGTGT AAGTTAAAAT
CAACCTTTTG GAATATTAAG AGAGAATTTC TTGCTATTAG GTTATGTGTA AGCTAGTTTT AGGTTGTGGG AGAAGTTGAT
TTCATTTATC TTATTTTTAT TTTGTTCAAG TTTATTCTAA TAGGGATGAA ATGTCGCGGT GTTAGTGGGG CCATGGGGGG
TATTCAAGCG GGGTTAGGTC TCGTGTCTTG CTCGTTGCTG GTGGGTGTTG TTTAACTTTT TCTATCAATT TGTTTTTCAG
TCACTGTCTG CAATGGCATA TGGTCACTTT ATTTGAGATT TTTATGCAAT TGATTTCGAA AGAATTGATG CTTCTAAAAT
TGTTGTGCTT GTCGACGTTT TTTCAAAAGT ATGTTTTAGA AGATTTGATT TTTTTATATT AAAATAGAAA GAATTTGAAG
ATTAGATTTT TTGTGGTTCT TTCACCTGAA TCAAATTTAC CCGCCAGAAC ACCTAAATAT TTCAGTTGTT AATCAATTAT
ACATTTCTGC TCACTGCTGG ATCAATTTTG ATACCTCCAT AAATTACTCG ACAACTGTTA GTTTATGAAT AAATTGTTTG
GGGCGTTGAA GCAAACAGAA CACTAGTTGG AAGTCCAAAT TTTCTAATTA ATTAATTTGT TGTTTTGATG ACAGTTGGTG
ACCTTAACCA CCTGATTTCT GCCACCATGA GTGGAGTTAC TTGCTGTCTA CGTTTCCCTG GGCAACTGAA CTCAGATCTT
CGCAAGCTTG CTGTTAATCT TATCCCATTC CCCCGGCTCC ATTTCTTTAT GGTTGGGTTT GCGCCCTTGA CATCTAGAGG
ATCCCAGCAG TACCGTGCTT TGACTGTTCC TGAATTAACA CAGCAAATGT GGGATGCTAA GAACATGATG TGTGCTGCTG
ATCCTCGTCA TGGTCGTTAT TTGACTGCAT CAGCAATGTT CCGTGGTAAG ATGAGCACAA AGGAGGTAGA CGAGCAAATG
ATCAATGTGC AGAACAAGAA TTCTTCATAT TTCGTTGAGT GGATACCTAA TAATGTGAAG TCCAGCGTGT GTGATATCCC
GCCTAAGGGT CTCAAAATGG CTTCCACTTT CATTGGCAAT TCAACTTCAA TCCAGGAGAT GTTCAGGAGA GTTAGTGAGC
AGTTCACGGC TATGTTCAGG CGTAAGGCTT TCTTGCATTG GTACACTGGA GAAGGAATGG ACGAAATGGA GTTCACTGAG
GCTGAGAGTA ACATGAACGA TCTTGTTGCG GAGTATCAGC AGTACCAGGA TGCTACTGCC GATGACGAAG AGTACGACGA
GGAGGAGGAA GAAGAGGAAA TTCCAGCTTA AGACTCTTCC TTCATTTATC AAAATTGTTT CAAATATCAA TGTGATTGGC
TTTGAACGAG TGGTGTAAGT TTTAATTGTG ATGCAGTCAA ATTAGATTGA CTTCTTAATG TGTATGCTTA TTATTGATTG
TTGACATTGT ATAAACTGGG TTCTCTTGAC AATGTTTCTG TTTTTTGAGA GATCAAGTCT TGGATGTTTG TAATAGTTAG
TAACATGTTT TTTCTCTCTT CACCTCTCCT GTTTTGATAT CTTTTGATTA TAGTAAGTTG CCTATGATCT AAGTTTTCGG
TTTTAATTGA CATGCTGTTC CATACGTGCT TGATTTATCC TGGGTGGAGA CAGACTAAGG ATTTGTCATA ATGAAATTGG
GGGCATGACA AGATACGATG GTTTAATTTA TTTTGACATT AATGTTGTAT GATTATTGGT AAGATGCTAT TTTTGATGTG
ATTAAAATGT CAATACAACT GTATGTAGTT AATGCTTGTT TCGTAAGAAT AGAAAGAAGG CGGTGATTAT AAATCTGATG
ATGATATTGG TATTGCTATT CACGAAACTC TGGAAGAAAT AAAAAGAAAA TGGCGGTAAA GAAATAAAAA AGGTGAAGGA
AAGGAATAAG CAGGAAAACT GTGATTGTAT GATTGCGGCA TCAGATGATG AAGCCATTAT TCAGGTGCAC GGGACCGAGC
CGGTGACAAA TCAGCCTTCT TGAAAGTTAA GTCTCTGAAA TTCTATGGAT GTAGTATTAA TAATATTCTT GTGTCACACT
TAATCTTTTT 

>Vigan.05G109400.01
AAGAAAGTAA AAGGGTAACA TTCTCTGGTG TGGCATCAAC GGTGAGAGAT CAAATTCCAG AACAGTGTCG TTTGGTTTGG
TTCCTTATCA CAATTCACAG CTCAGTACAG CAAAGCACTA TGATTTGAAA AAATCCATTC TATTCCGAAA AAACCCTCAG
GACATGACAC AATTACAAAA CAAACCCGTC CTTCAAGTTA TCCATTCCAT TGACCCCTCT CATTCATTTC CATTTCCTTC
GAAACCAATC TCTAGTTTCT TCAAACCCTA ATTTCCTTTC TCTCACATTC TTGAACACTC GCCAGTCGAA AATGAGAGAA
ATCTTGCACA TCCAGGGAGG CCAATGCGGG AACCAGATCG GAGCCAAGTT CTGGGAGGTC ATCTGCGATG AGCACGGCAT
CGACCACACC GGAAAGTACA GCGGCGACTC CGAGCTCCAA CTCGAACGCA TCAATGTCTA CTATAATGAA GCCAGCGGAG
GAAGGTACGT TCCACGCGCC GTCCTCATGG ATCTTGAACC CGGCACCATG GATTCCGTCA GATCCGGCCC CTTCGGCCAG
ATCTTCCGTC CCGACAACTT TGTCTTCGGC CAGTCCGGCG CCGGCAACAA CTGGGCCAAA GGCCACTACA CTGAAGGGGC
CGAACTCATC GACTCAGTTC TCGACGTCGT TCGCAAGGAA GCCGAAAATT GCGATTGCTT GCAAGGGTTT CAGGTGTGCC
ATTCTCTTGG TGGTGGAACG GGTTCCGGCA TGGGGACGCT TCTGATCTCA AAGATTCGCG AGGAGTATCC AGATCGGATG
ATGTTGACGT TTTCGGTGTT TCCTTCTCCT AAGGTTTCTG ACACCGTTGT GGAGCCTTAC AATGCTACGC TCTCTGTTCA
CCAACTAGTA GAGAACGCTG ATGAGTGTAT GGTTCTGGAC AATGAGGCTC TCTACGACAT TTGTTTCAGG ACCCTCAAGC
TCGCTACACC CACCTTTGGT GACCTTAACC ACCTGATTTC TGCCACCATG AGTGGAGTTA CTTGCTGTCT ACGTTTCCCT
GGGCAACTGA ACTCAGATCT TCGCAAGCTT GCTGTTAATC TTATCCCATT CCCCCGGCTC CATTTCTTTA TGGTTGGGTT
TGCGCCCTTG ACATCTAGAG GATCCCAGCA GTACCGTGCT TTGACTGTTC CTGAATTAAC ACAGCAAATG TGGGATGCTA
AGAACATGAT GTGTGCTGCT GATCCTCGTC ATGGTCGTTA TTTGACTGCA TCAGCAATGT TCCGTGGTAA GATGAGCACA
AAGGAGGTAG ACGAGCAAAT GATCAATGTG CAGAACAAGA ATTCTTCATA TTTCGTTGAG TGGATACCTA ATAATGTGAA
GTCCAGCGTG TGTGATATCC CGCCTAAGGG TCTCAAAATG GCTTCCACTT TCATTGGCAA TTCAACTTCA ATCCAGGAGA
TGTTCAGGAG AGTTAGTGAG CAGTTCACGG CTATGTTCAG GCGTAAGGCT TTCTTGCATT GGTACACTGG AGAAGGAATG
GACGAAATGG AGTTCACTGA GGCTGAGAGT AACATGAACG ATCTTGTTGC GGAGTATCAG CAGTACCAGG ATGCTACTGC
CGATGACGAA GAGTACGACG AGGAGGAGGA AGAAGAGGAA ATTCCAGCTT AAGACTCTTC CTTCATTTAT CAAAATTGTT
TCAAATATCA ATGTGATTGG CTTTGAACGA GTGGTGTAAG TTTTAATTGT GATGCAGTCA AATTAGATTG ACTTCTTAAT
GTGTATGCTT ATTATTGATT GTTGACATTG TATAAACTGG GTTCTCTTGA CAATGTTTCT GTTTTTTGAG AGATCAAGTC
TTGGATGTTT GTAATAGTTA GTAACATGTT TTTTCTCTCT TCACCTCTCC TGTTTTGATA TCTTTTGATT ATAGTAAGTT
GCCTATGATC TAAGTTTTCG GTTTTAATTG ACATGCTGTT CCATACGTGC TTGATTTATC CTGGGTGGAG ACAGACTAAG
GATTTGTCAT AATGAAATTG GGGGCATGAC AAGATACGAT GGTTTAATTT ATTTTGACAT TAATGTTGTA TGATTATTGG
TAAGATGCTA TTTTTGATGT GATTAAAATG TCAATACAAC TGTATGTAGT TAATGCTTGT TTCGTAAGAA TAGAAAGAAG
GCGGTGATTA TAAATCTGAT GATGATATTG GTATTGCTAT TCACGAAACT CTGGAAGAAA TAAAAAGAAA ATGGCGGTAA
AGAAATAAAA AAGGTGAAGG AAAGGAATAA GCAGGAAAAC TGTGATTGTA TGATTGCGGC ATCAGATGAT GAAGCCATTA
TTCAGGTGCA CGGGACCGAG CCGGTGACAA ATCAGCCTTC TTGAAAGTTA AGTCTCTGAA ATTCTATGGA TGTAGTATTA
ATAATATTCT TGTGTCACAC TTAATCTTTT T

>Vigan.05G109400.01
ATGAGAGAAA TCTTGCACAT CCAGGGAGGC CAATGCGGGA ACCAGATCGG AGCCAAGTTC TGGGAGGTCA TCTGCGATGA
GCACGGCATC GACCACACCG GAAAGTACAG CGGCGACTCC GAGCTCCAAC TCGAACGCAT CAATGTCTAC TATAATGAAG
CCAGCGGAGG AAGGTACGTT CCACGCGCCG TCCTCATGGA TCTTGAACCC GGCACCATGG ATTCCGTCAG ATCCGGCCCC
TTCGGCCAGA TCTTCCGTCC CGACAACTTT GTCTTCGGCC AGTCCGGCGC CGGCAACAAC TGGGCCAAAG GCCACTACAC
TGAAGGGGCC GAACTCATCG ACTCAGTTCT CGACGTCGTT CGCAAGGAAG CCGAAAATTG CGATTGCTTG CAAGGGTTTC
AGGTGTGCCA TTCTCTTGGT GGTGGAACGG GTTCCGGCAT GGGGACGCTT CTGATCTCAA AGATTCGCGA GGAGTATCCA
GATCGGATGA TGTTGACGTT TTCGGTGTTT CCTTCTCCTA AGGTTTCTGA CACCGTTGTG GAGCCTTACA ATGCTACGCT
CTCTGTTCAC CAACTAGTAG AGAACGCTGA TGAGTGTATG GTTCTGGACA ATGAGGCTCT CTACGACATT TGTTTCAGGA
CCCTCAAGCT CGCTACACCC ACCTTTGGTG ACCTTAACCA CCTGATTTCT GCCACCATGA GTGGAGTTAC TTGCTGTCTA
CGTTTCCCTG GGCAACTGAA CTCAGATCTT CGCAAGCTTG CTGTTAATCT TATCCCATTC CCCCGGCTCC ATTTCTTTAT
GGTTGGGTTT GCGCCCTTGA CATCTAGAGG ATCCCAGCAG TACCGTGCTT TGACTGTTCC TGAATTAACA CAGCAAATGT
GGGATGCTAA GAACATGATG TGTGCTGCTG ATCCTCGTCA TGGTCGTTAT TTGACTGCAT CAGCAATGTT CCGTGGTAAG
ATGAGCACAA AGGAGGTAGA CGAGCAAATG ATCAATGTGC AGAACAAGAA TTCTTCATAT TTCGTTGAGT GGATACCTAA
TAATGTGAAG TCCAGCGTGT GTGATATCCC GCCTAAGGGT CTCAAAATGG CTTCCACTTT CATTGGCAAT TCAACTTCAA
TCCAGGAGAT GTTCAGGAGA GTTAGTGAGC AGTTCACGGC TATGTTCAGG CGTAAGGCTT TCTTGCATTG GTACACTGGA
GAAGGAATGG ACGAAATGGA GTTCACTGAG GCTGAGAGTA ACATGAACGA TCTTGTTGCG GAGTATCAGC AGTACCAGGA
TGCTACTGCC GATGACGAAG AGTACGACGA GGAGGAGGAA GAAGAGGAAA TTCCAGCTTA A

>Vigan.05G109400.01
MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGKYSGDS ELQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSVRSGP
FGQIFRPDNF VFGQSGAGNN WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP
DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL
RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM CAADPRHGRY LTASAMFRGK
MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
EGMDEMEFTE AESNMNDLVA EYQQYQDATA DDEEYDEEEE EEEIPA*