GBrowse Details

Vigan.05G099500.01

Basic Information:
Name: Vigan.05G099500.01
Multiple alignment
Variant Information
Position: Chr05:7666142..7669672 (+ strand)
Length: 3531
Functional Information:
Description: Similar to Uncharacterized protein. [I1L068, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:254.98,52.86,65.12,62.04,70.49,81.07 ,64.53,52.39
Arabidopsis thaliana homolog: AT4G17170.1
Automatic updates:
Name: NM_001251238 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max guanine nucleotide regulatory protein (RAB2), mRNA.
PubMed ID: 8806409 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:7666142..7666515 (+ strand)
Length: 374
Type: five_prime_UTR
Position: Chr05:7666516..7666561 (+ strand)
Length: 46
Type: CDS
Position: Chr05:7667093..7667232 (+ strand)
Length: 140
Type: CDS
Position: Chr05:7668022..7668104 (+ strand)
Length: 83
Type: CDS
Position: Chr05:7668555..7668759 (+ strand)
Length: 205
Type: CDS
Position: Chr05:7669063..7669131 (+ strand)
Length: 69
Type: CDS
Position: Chr05:7669361..7669453 (+ strand)
Length: 93
Type: CDS
Position: Chr05:7669454..7669672 (+ strand)
Length: 219
Type: three_prime_UTR

>Vigan.05G099500.01 class=Sequence position=Chr05:7666142..7669672 (+ strand)
AAAACATCTT TATCTAGTTC TTTTATCTCT TACTCCATGG GCCTAAAAGG CCCAACAGCC TGGGCCATAA ATACGTATCG
CACGCGTATA GTTATGGTAT AATCTTAAGA GAGAAGAAAG AAAGTGAGAA GGGAGAAGGA AGGTATAGTA TAGAAGAACG
AAACGTATTA TCTTGCACTG CATTGGATCG CATCGCTGGA ACGGAACACA ATAGAACTCT TATTTATTTA ATTTGACTAT
CTCTCTTATT TTCTCTCTCC TTAATTACTT CTTGATCATC ATCTTCATCA TCTTCTCTTC TATTCTCTTC TTTTCCTCTC
TCTGTTTTCT TTCACAACAA TTCTCCTTCC AGATTCCAAC CTTAACTGTT CGCAATGTCT TACGCATACC TTTTCAAATA
CATCATCATC GGGGACACTG GTAATCTCAA TTTCCCTCTC TGATCTCGCT TCTGCGCTTA ATTTCGGATC GGATTTACGT
TTTTGGGGTT TTGTGAGAAT GTTTTGATGG ATGAATTCAT GCGTAATATC ATAGTGGATT TGATGAAGGG ATTCTGATTA
TTCTGGTTCT GATATTTTTA TATCGTGTGG TCGCAGTTAT GTTTTTCGCA AAATATAGTT ATTATTGTAT TCAATCGAGT
TAACTGTTGA AAAAATTATG AAACTGTTTT TATTATGTGT GCTTGTGTTG TACCTGCTTC ACATACTTTA ACTATAGTGG
GGCTCTGTGA TGGAGCTAAG ATTTTAATTT GGAAAGAGGT TTTTGTGATT TAATGTAGGC TTCGTTGTTA CTTGCTTCTT
TTTAACTGAA AATATGAAGT ATTAAATGTT ATTGTGTTAT TTTTTTTTAT CTGTGTATTT TGTTTACCAT ATATGTAGTT
TTAGTAGTAG TTGTTTGTGT GAAGAGGACT GACTGGGCTG TGGCTTAATT AATTAATTTT TGTTTCTGTA GGAGTTGGAA
AGTCCTGTCT TCTACTTCAA TTCACGGACA AGCGCTTTCA ACCTGTCCAT GACTTGACCA TCGGTGTTGA ATTTGGTGCC
CGGATGATCA CAATTGATAA CAAACCAATC AAGTTGCAAA TATGGGATAC GGTTTGTTAT ACACCACTTC CACATAGCTT
GGCCATTTAT CCAATCTGTT TGAATTTTGA AATTTGTCAA ACATTTTTTG TTTTATGATC CATGTAGCCA AATTGACTTA
GTAAAATATG ACAATTATTC TTTCGTTTGT GGGAGTTGGT AATTATTCAC ACTCCACAGC CTCTTTTCTT TGGGTGCTAT
TCACCCTTAG CTTCTGTGTC CACCCAAAAG AGTTCTGCGT GTATGAAGAT GATAATATCA TTCATATCCA TGCCCTGTTT
GTTCCAATGA ACATTTTGCT GAGAATGGTA TGGTGTGGTG TGTACTTGCA TACTGACCCA TTGCTATTAC TGAACTTGAA
AAACCCTAAT AAATTTGGGG TGAAAGGCTT TTTTCATGTA CTTAGAATTA GAAAAAAGTT GCTATATTCT TGAGGGTGAG
CCTTGGCCTA GCAGGGAAGT TGACTTTGGT TACCAGTTGC TCATGGATTC AAATCCGGGA ACAACCTCTT TGCATATGCA
AGTGGTTAAG GCTTGTGTAC AATGACCCTC TCTCATATCT TTGCATAGTG AGAAGCCTTC CATGTTAGTT TATGCACGAG
ATAATAATAT TTTTATGTTT AGGAGATTGA ATCCTAGTGG TGACAAATTG GAATCATCTT GCCAGCTTAA AGTTTGGATT
TCATTTTGTA TATCTTTAGC TGAGATTCAT TATTCAGATT TTTCTGGTGG AAAATATTTT GCATTAGTTT TTGAGTTATA
ATATGTGCTT AAGTTACTGA GTTTCCTTGT AATATTGCAG GCTGGTCAAG AATCATTCAG ATCTATCACT AGGTCGTATT
ATAGAGGTGC TGCTGGTGCA CTGCTTGTTT ATGATATAAC CAGGTATCCT CTAATTTTCA CTTTTTCAAT ATATGTTTGA
AATCCTAAAA TGAAATAATT GTTTCATTTG TAAAGAAATT ACTTTCTTTT AGGAATCTGT AGATTTTATA AAGAAACTGT
ATATTATGCA TCCCGTCACC TCATATGATT TGTAAATCAT TTTAACCAAA ATGATTTCTT TTCATTTCTA TAAATCAAAC
ACAAGATAAG TGAATTTTAA ACATAGATAT ATGGAGATAT GGACAAATGT CCATATATTG ATGGAAAACA GCATTTTATG
GGTAGTTATC TGCTTAGGAG ATACATGTTT TGAGCTTATT CAATTTGATT GGGTAACAAA ATATGCGTGA CAATTTGGTA
CATCCATGCT TTGTGGTTTT ATGTAAGGAT TATGCGGTTT TTTTTTATCT TAAATAGGGA AAATAAATGA TGTTGATCTG
TGTTTACCAA TAGGAGAGAG ACATTTAATC ACTTGGCTAG CTGGTTGGAA GATGCAAGGC AGCATGCAAA TGCAAATATG
ACAATTATGC TGATTGGTAA CAAGTGTGAT CTTGCTCATA GACGGGCAGT AAGCACTGAG GAAGGCGAGC AATTTGCAAA
GGAGCATGGG TTGATATTCA TGGAGGCCTC AGCAAAAACT GCTCAGAATG TTGAAGAGGT AAAAAATCAC ATCATACAAC
ATTTTGCATT TTCATCATCT GTCCTTCCCG CCCCACTCCC AATAGAAAAG TCTGATTTTC AACATATCTA AGCTTATATG
TTAACTGCAT GTTTGGTAAC ACGTTCACTA ATAATGGATC CACTTCCATA CAGCTGAAGA AGCTACGGAG AGTTTGCTCG
TGTCTTTTTT TTTTTTTCAA ATTTAACGTA AAATGGGGAC GTGTATCCAA AACAAAATAG AAATATCTTG AAAAATAATC
ATCTAAATAG AAGTTTTAAT ATATAGCCCA TTCTTCTGCA GGCATTCATA AAAACAGCTG CAACCATATA CAAGAAGATT
CAGGATGGAG TTTTTGATGT ATCAAATGAG GTTAGTTTCT TTCTCTCCAG CTTTATGTCA TTCTTTACCT TGGCTGTTTA
TCACTTTCAT ATCAAATTCT CAGTAATGGA ATATGAAGAG CCAGTCGGGT ATTTAATTAT TGTCTATCTT GTGTTTTTAC
AATCTGCGAA TGCATTTGGG GGAAACTATC TAAAACGAAA AAAATTCTTT GATTGAAAGA GGAAATACTT ACGACACTGA
AATTTTTGTG TGGTTTCAGT CTTATGGAAT TAAAGTAGGA TATGGTGGAA TTCCTGGACC TTCTGGAGGT AGGGACGGCC
CTTCTGCTGC GGCTGGAGGC TGCTGCAGTT GAATGGAACA TATCAGAACC AATTTGCATC AATATAGTCC TTTATGTATT
CTCTTCTTTT CTATATTTTG GGTTTGGATA TGATGATTAA ATGTTCTGTC CATTGATAAA ATCAGATAAT TGTATAATGT
TTTCTTTTTA ATCTTGTCTT TGTTTCTTTG ACTTGAACTG ATTATTTGTC TATATTTGTG TGCATAGTTA ATCGATCTGT
TGTTTCATTC T

>Vigan.05G099500.01
AAAACATCTT TATCTAGTTC TTTTATCTCT TACTCCATGG GCCTAAAAGG CCCAACAGCC TGGGCCATAA ATACGTATCG
CACGCGTATA GTTATGGTAT AATCTTAAGA GAGAAGAAAG AAAGTGAGAA GGGAGAAGGA AGGTATAGTA TAGAAGAACG
AAACGTATTA TCTTGCACTG CATTGGATCG CATCGCTGGA ACGGAACACA ATAGAACTCT TATTTATTTA ATTTGACTAT
CTCTCTTATT TTCTCTCTCC TTAATTACTT CTTGATCATC ATCTTCATCA TCTTCTCTTC TATTCTCTTC TTTTCCTCTC
TCTGTTTTCT TTCACAACAA TTCTCCTTCC AGATTCCAAC CTTAACTGTT CGCAATGTCT TACGCATACC TTTTCAAATA
CATCATCATC GGGGACACTG GAGTTGGAAA GTCCTGTCTT CTACTTCAAT TCACGGACAA GCGCTTTCAA CCTGTCCATG
ACTTGACCAT CGGTGTTGAA TTTGGTGCCC GGATGATCAC AATTGATAAC AAACCAATCA AGTTGCAAAT ATGGGATACG
GCTGGTCAAG AATCATTCAG ATCTATCACT AGGTCGTATT ATAGAGGTGC TGCTGGTGCA CTGCTTGTTT ATGATATAAC
CAGGAGAGAG ACATTTAATC ACTTGGCTAG CTGGTTGGAA GATGCAAGGC AGCATGCAAA TGCAAATATG ACAATTATGC
TGATTGGTAA CAAGTGTGAT CTTGCTCATA GACGGGCAGT AAGCACTGAG GAAGGCGAGC AATTTGCAAA GGAGCATGGG
TTGATATTCA TGGAGGCCTC AGCAAAAACT GCTCAGAATG TTGAAGAGGC ATTCATAAAA ACAGCTGCAA CCATATACAA
GAAGATTCAG GATGGAGTTT TTGATGTATC AAATGAGTCT TATGGAATTA AAGTAGGATA TGGTGGAATT CCTGGACCTT
CTGGAGGTAG GGACGGCCCT TCTGCTGCGG CTGGAGGCTG CTGCAGTTGA ATGGAACATA TCAGAACCAA TTTGCATCAA
TATAGTCCTT TATGTATTCT CTTCTTTTCT ATATTTTGGG TTTGGATATG ATGATTAAAT GTTCTGTCCA TTGATAAAAT
CAGATAATTG TATAATGTTT TCTTTTTAAT CTTGTCTTTG TTTCTTTGAC TTGAACTGAT TATTTGTCTA TATTTGTGTG
CATAGTTAAT CGATCTGTTG TTTCATTCT

>Vigan.05G099500.01
ATGTCTTACG CATACCTTTT CAAATACATC ATCATCGGGG ACACTGGAGT TGGAAAGTCC TGTCTTCTAC TTCAATTCAC
GGACAAGCGC TTTCAACCTG TCCATGACTT GACCATCGGT GTTGAATTTG GTGCCCGGAT GATCACAATT GATAACAAAC
CAATCAAGTT GCAAATATGG GATACGGCTG GTCAAGAATC ATTCAGATCT ATCACTAGGT CGTATTATAG AGGTGCTGCT
GGTGCACTGC TTGTTTATGA TATAACCAGG AGAGAGACAT TTAATCACTT GGCTAGCTGG TTGGAAGATG CAAGGCAGCA
TGCAAATGCA AATATGACAA TTATGCTGAT TGGTAACAAG TGTGATCTTG CTCATAGACG GGCAGTAAGC ACTGAGGAAG
GCGAGCAATT TGCAAAGGAG CATGGGTTGA TATTCATGGA GGCCTCAGCA AAAACTGCTC AGAATGTTGA AGAGGCATTC
ATAAAAACAG CTGCAACCAT ATACAAGAAG ATTCAGGATG GAGTTTTTGA TGTATCAAAT GAGTCTTATG GAATTAAAGT
AGGATATGGT GGAATTCCTG GACCTTCTGG AGGTAGGGAC GGCCCTTCTG CTGCGGCTGG AGGCTGCTGC AGTTGA

>Vigan.05G099500.01
MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA
GALLVYDITR RETFNHLASW LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF
IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD GPSAAAGGCC S*