GBrowse Details

Vigan.05G097000.01

Basic Information:
Name: Vigan.05G097000.01
Multiple alignment
Variant Information
Position: Chr05:7458106..7460654 (+ strand)
Length: 2549
Functional Information:
Description: Similar to C2. [Q2HV28, Medicago truncatula]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: C2 domain (IPR000008)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.23,1.97,6.14,3.92,2.93,8.94,5.37,6.78
Arabidopsis thaliana homolog: AT5G47710.1
Automatic updates:
Name: NM_001250402 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499880 (LOC100499880), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255372 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max C2 domain-containing protein (LOC100779624), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:7458106..7459256 (+ strand)
Length: 1151
Type: five_prime_UTR
Position: Chr05:7459257..7459370 (+ strand)
Length: 114
Type: CDS
Position: Chr05:7459469..7459564 (+ strand)
Length: 96
Type: CDS
Position: Chr05:7459997..7460290 (+ strand)
Length: 294
Type: CDS
Position: Chr05:7460291..7460654 (+ strand)
Length: 364
Type: three_prime_UTR

>Vigan.05G097000.01 class=Sequence position=Chr05:7458106..7460654 (+ strand)
CTAAAGTTTC AACGTGGGAT ATTAGAAGAA GACCAGGCCT GGTCAATCCT GCGGCCAACA CAGTGGATCT TTTAATAATG
CATAATCATA TCCTTTGACC GACAGGTGTG ATTCTCACAT TTTCCTGTCT TCAGATAGCC TTCTCATTAA CCCACCTGTA
GCTACCGGTG AAGAGGTTGT TCTACTGTCT TTAAGTCTCA TCGTCTTCTC CTTTTTGCTC ATTCACAAAT CACAGCAACA
CAACGCACAA ATAATATATT AACACACTTC CCAAACCACC TTACGCACAC ACACTCACAC ACACTTATCC ACTGGTAAGT
TCCAACATCC TTCATGTCTT TCTTTCTTTT GTTTTCTGCC TATTGACTTC CCAAAGGGAT ACATCCTTTT CATTTTTCTT
TTTTTCTTTA GTGTAAGTTG GATCAGTGAG CCAAATGCCA AACACACTTC ACTTGGCTTT GGGATCGGGA TCCTTCTCCT
ATGATTCTTT CTTTTGTTTA ATGAGGATTT ACTGAGGAAT TCATCCTTCA TTCCTCGCTT GCTTTCTCTC ATTCGGTTCA
ATGATCTGTT GCTTTTTGTT GTCGGTACTT CCCCTTCTCT GCTCTCAAAA TGCTTTTGTT AATACCTCAG CAAATTTTGA
ATATTTAGTT TCTTGAAAAA GCTCGACTTT TGATATGGGT AGGTAAGAAA AAGTATCTTT CTTCCAGAAA AAGGAAGTAA
AGTAACTATT TTTCTATCCA CAAAGCACCC TTCTTCAACT TGGTTTATTC TATTCTTCTG TTGGGTTGGG TTCATTTCTC
ATTATGCTTA CGTTGGATTT CTTTTACTGG TAATTTTGCA GCAAAAACCT TACTTACAGA AAGGAAAAAG AAAATTCAGA
CTTCCATATT TTTAACTTTT CCTTCTATCT TTTTCCTTCT TGCTATTTGG GTTAAAAGAA AAATGAGACT AACATTTTTT
TAATTTTTGC CTTGGGGTTG ATAAGTTGCA ATTCTTTGTA AATAAGTTGC AATTCTTTGT AAAAGGGAAG TATTTTCCAC
CATTTTCTTG TTTTTGTGTC TTAAATGAAT GGTGAGTATT GCAACTTCAT ACTTTGTACT TTGGTTTGGA CCTTGTTTGA
TTACTGTTTT AACTTGTTTG CAGGAGTATA AATGATGAGT GAACAATTGG GGCTGCTAAA AGTCATTGTT GTGCAAGGGA
AAAGGTTGGT GATCCGGGAT TTCAAGACCA GTGATCCTTA TGTTGTGCTG AAACTAGGGA ACCAGGTAAA TAGGATTGAT
ATGTCAAATT CATTTTAGCT TATTTCTGTT AACATTAAAT TATGTAGCAT ATTTAACCCC AAAATGTTAC CACACTAAAC
CAGACTGCAA AGACCAAGGT AATCAACAGC TGCTTGAATC CTGTTTGGAA TGAAGAGCTT AATTTCACTC TTACAGAACC
CTTGGGAGTG CTGAATTTGG TAAGTTCCAT AATATTTGAG TGTACCCCTT CATTCTTCTT TTCTTCAATC TCTAGTTTGT
AGTCTATTTT GCAAGGAAGA TACTCTCCCT ACTCAGTGTT TGTGAAATAG ATTGGTGATT TGTTCTGGTA ATTTTAAAAA
GTAAATTTTG TTTTAGGTCC TTTACATTTT GGCTAAATAT AGCTTTAGTT CTATACTTTA TAAAAAAAGA TTTTGGTTCT
GTCATTCTAT TGGCAATTTT TGTTCCTTGT TCTGGTATAA TGTTACATAT TAAGGATTAA GGGTTGACAT CATGAGAACC
AAGATCATCT CTAAAATAAA TTTTGACCAA AGATAAGAAT CTAAGACATA TTTTATCATA TTTGAATACA GGGCACTGTT
TATTAGCTTT TGTAATTGTA CAACTGATTT GCTTTTTCCT TTTTTTTATA GGAAGTGTTT GATAAAGATC TGTTAAAGGC
TGATGACAAG ATGGGAAATG CTTTCCTCAA CCTTCAACCA TTAGTGTCTG CAGCGAGATT AAGAGATATC TTACGAGTGT
CCTCTGGTGA GACAACCTTA AGGAAGGTCA TACCTGATAC TGAAAACTGT CTTGTCCGTG AAAGCAGTAT CAATTGTGTT
AATGGTGAGG TGGTGCAGAA TGTTTGGTTA AGGCTTCGTG GAGTAGAGTC TGGGGAACTA GAATTGATCA TCAAGCTGGC
CACACCTATT ACTCCTAAAA CATAGTGCAG AATTTGCAAT TGTCCCAAGT GAAAATCTCT AACCAGATCA CAATTGTAAC
ATTTTATGTG TAGTTGAGTC ATGCTTTTGA TTAACTTCTG CATAGATGAA TTTCTACCCA AAAAATGAAA AAAAAAATGT
CATTGATAGA TAAAAGCCTC CAGAAGCTGC ATTTTCAAAT AAACTTGTGG TGATTTATGG CTTCTGCTTT ATGGTGTGCT
AAGTTTGTTA CCATGTATTA CATACCCTCC CCCGAAAAGT AGAAACTAGC CCTTATTTTA GCAATGATCA TTCATTGGGT
ATTCCGTAAG TTTTGATGGT ATTGTATTGT TTTTCAGTTG AGTTAAGAAA AGAGAAGTTG TTCTGCTTA

>Vigan.05G097000.01
CTAAAGTTTC AACGTGGGAT ATTAGAAGAA GACCAGGCCT GGTCAATCCT GCGGCCAACA CAGTGGATCT TTTAATAATG
CATAATCATA TCCTTTGACC GACAGGTGTG ATTCTCACAT TTTCCTGTCT TCAGATAGCC TTCTCATTAA CCCACCTGTA
GCTACCGGTG AAGAGGTTGT TCTACTGTCT TTAAGTCTCA TCGTCTTCTC CTTTTTGCTC ATTCACAAAT CACAGCAACA
CAACGCACAA ATAATATATT AACACACTTC CCAAACCACC TTACGCACAC ACACTCACAC ACACTTATCC ACTGGTAAGT
TCCAACATCC TTCATGTCTT TCTTTCTTTT GTTTTCTGCC TATTGACTTC CCAAAGGGAT ACATCCTTTT CATTTTTCTT
TTTTTCTTTA GTGTAAGTTG GATCAGTGAG CCAAATGCCA AACACACTTC ACTTGGCTTT GGGATCGGGA TCCTTCTCCT
ATGATTCTTT CTTTTGTTTA ATGAGGATTT ACTGAGGAAT TCATCCTTCA TTCCTCGCTT GCTTTCTCTC ATTCGGTTCA
ATGATCTGTT GCTTTTTGTT GTCGGTACTT CCCCTTCTCT GCTCTCAAAA TGCTTTTGTT AATACCTCAG CAAATTTTGA
ATATTTAGTT TCTTGAAAAA GCTCGACTTT TGATATGGGT AGGTAAGAAA AAGTATCTTT CTTCCAGAAA AAGGAAGTAA
AGTAACTATT TTTCTATCCA CAAAGCACCC TTCTTCAACT TGGTTTATTC TATTCTTCTG TTGGGTTGGG TTCATTTCTC
ATTATGCTTA CGTTGGATTT CTTTTACTGG TAATTTTGCA GCAAAAACCT TACTTACAGA AAGGAAAAAG AAAATTCAGA
CTTCCATATT TTTAACTTTT CCTTCTATCT TTTTCCTTCT TGCTATTTGG GTTAAAAGAA AAATGAGACT AACATTTTTT
TAATTTTTGC CTTGGGGTTG ATAAGTTGCA ATTCTTTGTA AATAAGTTGC AATTCTTTGT AAAAGGGAAG TATTTTCCAC
CATTTTCTTG TTTTTGTGTC TTAAATGAAT GGTGAGTATT GCAACTTCAT ACTTTGTACT TTGGTTTGGA CCTTGTTTGA
TTACTGTTTT AACTTGTTTG CAGGAGTATA AATGATGAGT GAACAATTGG GGCTGCTAAA AGTCATTGTT GTGCAAGGGA
AAAGGTTGGT GATCCGGGAT TTCAAGACCA GTGATCCTTA TGTTGTGCTG AAACTAGGGA ACCAGACTGC AAAGACCAAG
GTAATCAACA GCTGCTTGAA TCCTGTTTGG AATGAAGAGC TTAATTTCAC TCTTACAGAA CCCTTGGGAG TGCTGAATTT
GGAAGTGTTT GATAAAGATC TGTTAAAGGC TGATGACAAG ATGGGAAATG CTTTCCTCAA CCTTCAACCA TTAGTGTCTG
CAGCGAGATT AAGAGATATC TTACGAGTGT CCTCTGGTGA GACAACCTTA AGGAAGGTCA TACCTGATAC TGAAAACTGT
CTTGTCCGTG AAAGCAGTAT CAATTGTGTT AATGGTGAGG TGGTGCAGAA TGTTTGGTTA AGGCTTCGTG GAGTAGAGTC
TGGGGAACTA GAATTGATCA TCAAGCTGGC CACACCTATT ACTCCTAAAA CATAGTGCAG AATTTGCAAT TGTCCCAAGT
GAAAATCTCT AACCAGATCA CAATTGTAAC ATTTTATGTG TAGTTGAGTC ATGCTTTTGA TTAACTTCTG CATAGATGAA
TTTCTACCCA AAAAATGAAA AAAAAAATGT CATTGATAGA TAAAAGCCTC CAGAAGCTGC ATTTTCAAAT AAACTTGTGG
TGATTTATGG CTTCTGCTTT ATGGTGTGCT AAGTTTGTTA CCATGTATTA CATACCCTCC CCCGAAAAGT AGAAACTAGC
CCTTATTTTA GCAATGATCA TTCATTGGGT ATTCCGTAAG TTTTGATGGT ATTGTATTGT TTTTCAGTTG AGTTAAGAAA
AGAGAAGTTG TTCTGCTTA

>Vigan.05G097000.01
ATGATGAGTG AACAATTGGG GCTGCTAAAA GTCATTGTTG TGCAAGGGAA AAGGTTGGTG ATCCGGGATT TCAAGACCAG
TGATCCTTAT GTTGTGCTGA AACTAGGGAA CCAGACTGCA AAGACCAAGG TAATCAACAG CTGCTTGAAT CCTGTTTGGA
ATGAAGAGCT TAATTTCACT CTTACAGAAC CCTTGGGAGT GCTGAATTTG GAAGTGTTTG ATAAAGATCT GTTAAAGGCT
GATGACAAGA TGGGAAATGC TTTCCTCAAC CTTCAACCAT TAGTGTCTGC AGCGAGATTA AGAGATATCT TACGAGTGTC
CTCTGGTGAG ACAACCTTAA GGAAGGTCAT ACCTGATACT GAAAACTGTC TTGTCCGTGA AAGCAGTATC AATTGTGTTA
ATGGTGAGGT GGTGCAGAAT GTTTGGTTAA GGCTTCGTGG AGTAGAGTCT GGGGAACTAG AATTGATCAT CAAGCTGGCC
ACACCTATTA CTCCTAAAAC ATAG

>Vigan.05G097000.01
MMSEQLGLLK VIVVQGKRLV IRDFKTSDPY VVLKLGNQTA KTKVINSCLN PVWNEELNFT LTEPLGVLNL EVFDKDLLKA
DDKMGNAFLN LQPLVSAARL RDILRVSSGE TTLRKVIPDT ENCLVRESSI NCVNGEVVQN VWLRLRGVES GELELIIKLA
TPITPKT*