GBrowse Details

Vigan.05G089400.01

Basic Information:
Name: Vigan.05G089400.01
Multiple alignment
Variant Information
Position: Chr05:6819456..6824578 (- strand)
Length: 5123
Functional Information:
Description: Similar to Ubiquinol oxidase. [V7BRN3, Phaseolus vulgaris]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: alternative oxidase activity (GO:0009916)
InterPro: Alternative oxidase (IPR002680)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:81.61,30.60,40.48,46.46,54.32,4.10,9.27,8.72
Arabidopsis thaliana homolog: AT4G22260.1
Automatic updates:
Name: NM_001255210 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alternative oxidase 4, chloroplastic/chromoplastic-like (LOC100813378), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6819456..6819874 (- strand)
Length: 419
Type: three_prime_UTR
Position: Chr05:6819875..6820089 (- strand)
Length: 215
Type: CDS
Position: Chr05:6820465..6820512 (- strand)
Length: 48
Type: CDS
Position: Chr05:6820604..6820675 (- strand)
Length: 72
Type: CDS
Position: Chr05:6821071..6821139 (- strand)
Length: 69
Type: CDS
Position: Chr05:6821915..6822023 (- strand)
Length: 109
Type: CDS
Position: Chr05:6823007..6823122 (- strand)
Length: 116
Type: CDS
Position: Chr05:6823388..6823481 (- strand)
Length: 94
Type: CDS
Position: Chr05:6823876..6824053 (- strand)
Length: 178
Type: CDS
Position: Chr05:6824124..6824218 (- strand)
Length: 95
Type: CDS
Position: Chr05:6824219..6824578 (- strand)
Length: 360
Type: five_prime_UTR

>Vigan.05G089400.01 class=Sequence position=Chr05:6819456..6824578 (- strand)
AAGAAGAAAA GGCTAGAAGA GTTATTATTA CCTCACATAT AACTAGTTTT TAATTTTTGT GACATATATT CTATGAACCC
AAAGGTCGAT TAAACTAAAA TTTTCCGTGA AAGGACAACG AAATACCGAA TTTTGTATAG TTGAAAGAAA AAAACAAAAT
AAGGAAAACT GAGCAGAAAG AATATCCAAT ACAGGGGCAC GGGAAGTCGC CGGAATTGCC GTAAATGCGG CATTTGATAA
ATCTAATGCC TCCGTGGACC TCTCACCCTG TCGTTCTCCT TTCTTCTATT CAAGGCCGTT AATTTCTCTC TCTCCCTCTC
TCTCTCTCTC CACACACACA CCTCTCTATC CCTCTCAACC ATGGCGGCGA TTCTCTCTTC TTCACTCTTT GCTTCCTCCT
GTCTCCCCAA ACCATTTTCT CATCCTCGAA CTCATACCGC TTCATCACTT CTCAAGTTCG TAACCCTAAC CTTCCTTCTT
TTGTTCCTTT TTTTCAGTTT CATTCTCTGA TTCCATATTC TCTAGGGCTC GCGCTTCTCT CCTTCAGGAT AACGAGGAAA
AAGTGATCGT GCAGGACTCC TTCCCCTCCA AATCATCTCC ACTTCACACC ACTAATGGAA AATCTTCGGT GGACTCAATT
AGCACCTCTG CGTTTGAGAA AGGGATTATC AAGGTCGAAC AATCGGTCAA TATCTTTCTC ACGGTAATTT CATTATCCTC
TTTCAACTCT CAACTAAAAT TCGCTGTCAG AATCAGTTAC TGTTGTATTG TTGCGTATTC TTATTTATCG TTCAACTTCT
TACCAAAACA TTTTAATCGA GTTCGTAAGA GTAAGAGTAT TTAGCAAGCG TCTTACGCAA GGTTTTAAGA AACGGTCGCA
GTTTTGTCGG TTTCCTTGGT ATTGAAGGAA ACCGCACACA AATGAAGTTG ATGTGATCAA AATTGGACAA CCTTGATGTT
GGGCGGAAAA CAGATAACCT TACACAGTCG AAATTTTTTG ACTCGTCAGT TCTGCTTTTG GGGATTGTTA TTGTTACGAA
GAAGGGTGTG AGTATTAGTC GTTATTTACT TATTTTCAGC TTGGCTGATA ATTTCAGGAT TCTGTCATAA AGATACTTGA
TACTCTGTAC CATGATAGAA ACTACGCCAG GTTTTATGTG CTGGAGACTA TTGCCAGGGT TCCTTACTTT GGTAAGTACT
TGGAATCCTT ACTGCTACAC TTGAATATCC TTTTTTTTTT AAAATTGAAA CTGTATGTTA GGTTTTGATT TTAATCTTAA
GTTCACGACC ATGTTTGGAA CTTACAATAT TTTAGCTATA CTGTAGTAAA AATTACCAAG CTCGTTGAGC ATCACAGTCA
ATTTTGAACT TAATTTATTT GTAAATGTAT AGAGTCCCTG GGAATTTTCA TTGTGACTTT TCGGTATGAA GTTTTGTGTA
TTGTTATCTA TGGCAGCCTT TATGTCAGTT CTCCATATGT ACGAGAGTTT TGGATGGTGG AGGCGGGCAG ATTATCTGAA
AGTACATTTT GCTGAGAGCT GGAATGAAAT GCATCATTTG CTCATCATGG AAGTAAGATC TCTGCGAAAA TATTTCATTC
CAGCCTGCAA ATTTTGTTAG TTTTCCATCC AAAAGTTGTT TTGTTTTTAG AGGACCAGTA GTTGAATGTA TTATGAATTT
ATGAATAAAC TTAGCCGTTG GAGCAGAAGA CCTATTGAAA GTAAGAAAAT TGAGGAGATC ACTTACATTA AGGGAAGGGA
AAATTAGTCG TACATTACTA TGTGCCAGTT TGAAGATAAT GATTGGGGTC CCGTAAATGT GCTCCTTACC CATGCTTACT
TTTGTCAATG ATAACTTGGT AGGGGAAAAT GTTTTCAGCT GGCATGTTTT ATTCCTTTTG TTTTTAGGGA TAAAATATGA
TAGTTAAAGA ATTCAGTATT TATCCTTTGT TCAGATCAAA GCTATTTATA CTTTGTTCAA GCCCATCTTC AATGGATTGT
AACAATTGGT CAGGAAGCTA TGCTCATTTT TATCACTACA GCAAACATTG GAAACTGCTT TCTGAAAGTT GTTTTGAGGT
ACCAAATAAC AGAACATGTT TTCTGCAAAA AAATTCCACA CAAATACTAG AAAGTCAAAC AAAAATTAAA AACGAATATC
AGAAAGTTAT TTTTAACATT GGTGTGCATC CATAGAATGT TGCATTTCTA ACTATTTTTT GTTGGCTGTT AAGTTTAGGA
GAAGTCAATT TTTACTCCTG TAATGGTTGT AATTTTCTGT TTTATTGAAC TGTCGTGCAA TGACAGTATC AACAAAGTGT
AATGTCTTCA GAAAAAAGCT GCACCAACCA ACATAAAATG TTTATCTGCC CTAAAATTGA AAAATATTAT ATTTTTGGTA
TGACGAATGG GCCCTTAAAA TGAAAATAGA GGGTAAAAGT ATATTTCTAG GGGGAGAGGC CTTTGCAAGT TTTGTAGTTT
CACATGCATT AGTTGTGACT CTATTTTTTA TGTACTTTAT TGCATGAGAT GATAAGCTTG GTCGTCTGAC TGCAGGAACT
AGGAGGGAAT GCTTGGTGGT TTGATCGGTT CCTTGCTCAG CATATAGCAA TATTTTACTA TATTATGACA GTTTTAATGT
ATGCAATAAG CCCAAGAATG GCATGTAAGT ATTAAATGCT TGAATTTTGT TTAACTGCAG TTGCTGCTAG TGTTACATCT
TTTATTTTGT TGTTTATATT ATCTTTAAGT GATCATGTGA GGAGTTTTTA AGACATCAAG TGAAAAGTTC CCAATTGTTT
GATTGAAAAT ATAGAAGTTG CCTGCGCATT GAGGAAACTT TTGCAGCTAC TCTTCCTTTA CTACTGTCAC TGGTTGTTTA
CTTGGTTGTA CCAGTAATAG TAGTAAAGGA AGAGTATCTG CAAAATGTTT CCTCAACTCC TATATGGCCT TTTTTTTCTC
AGGCATCTAT ACCCATATAA AAAGGGATAT GATGTTTTAG GGTACAAATT TTGTATGTCC TATTTTACCC TTGTAACTAT
CATTGTGAAT GATTATTTTC CTCCCACGCT CTTCAAAATC ACTCCAATCT TCCAATAGCA TACCACAAAC CAATAATTTA
TTCTTTAACC TTCATTGTCA CTTTGTTTTT TTTTTCATTG ATTTAGTTTT TAAAGAATAT AGAGTCATGG AGTGCCTCGT
TTTCCCTAAT AACTGATAAA AAAAGAGATA AACAGAAGAT ATTAAACTGT AATGAGGAGG TTAAAACAAT CAAAGTAACG
GTTCAGCACA AACAAACAAG AATGGAGCAA CTCCTTGGTT GCCTTTTCTA AATTATCAAT ATTTAGTCAC CATGTTTGAT
TGAATTATAT TCTACTGTTA GTTACTTGGA ATCTTGGTTC TTGAATTATT GATTCTGTGA ATGGTTCATT CTGCCGCAGA
TCACTTTTCT GAATGTGTAG AGAGTCATGC ATTTGAAACT TACGACAAAT TTATCAAGGT CCAAGGAGGT ATTATGGATA
TTTCTTTTGT CTTTTTTTTT TCATTTATGT TTTTATTCTT TGTTTATAGT TGATTTTATG CTTTTCTTAT AGATCAGAAA
AGCAGTTAGC CCGTAGCATA GATTAATATT GACAGGCAGT GGTTATTCTA GCTTTATGTG AATGCTTACA TTTTTCATTT
TCCGCCTTGG ATTAAATTGG GCGTGAAATC ACCTTATTTG TTGTATAAGC CAACAGAAAA GAAAACAGAT ACTGAATTTT
TTATTCAATC ATAATATTAG TGATTTTATT TGATGAAAGT TCCTTATTAG ATTGTTCCTC TTTCCTTCCC ATACCCATTT
TATTGTGTCT ATTTGTGCCA GGAGCTTAAA TAACTCTAAC ATGGTTTGGT AAAATTTTTG CAGAGGAATT GAAAAAAATG
CCGCCTCCTG AGGTTGCTGT GAAATATTAT ACAGGAGATG ACTTGTATTT ATTTGGTAAG CTTTTATAAA TTTTTTTCTC
TTTTATGAAC TGGGGTTTCT TCTGGAGGAA AAACCTGGAA TTCTCACTTC ACATAATTTT CCTCAGATGA ATTTCAGACT
TCCAGAGTTC CAAATTCTAG AAGACCTAAG ATAGGTATGC TTTATATCTA ACACTTTGGA ACCTGGTCCA ACATTACTTT
TTTTACTAAT TTTCTAATCT GAACTGTTGT GTCTGGGGAG GGGATTTTTC TAGCACAGAT CCTTCAGAAT AATCAATGGC
TCAAGTTTTT TAAGTGGGCT GATCATTAAT CACTTTTTGA ACACTGAATA TTATTTGTGC TGTTAATTGC TCCTGTCCTG
AAGTGGAAAT ATTTGTACTG AAATTTCATT GTTGTGGTTT TGTGCAATCC CTTTATTCTA GTATAATTAT TTTCTTAAGA
ACAAAAAAAA TGCTTCTTTG CAGTGGACTT TGGAATTTGC TGTAAAAAAT TATCACATTG ATGATTAATA GTTTATTTTT
GTCATCCAGA CAATCTGTAC GACGTATTTT TAAATATCAG AGATGACGAA GCTGAACATT GTAAGACAAT GAAGGCTTGT
CAAATCCATG GTAACCTCCG GTCACCTCAT TCATATGCAG AGGATGGTGA TGATGTTTCA GCCTGTGCTC TGGAAGTAGA
TTGTGAAGGA ATAGTAGACT GTATAAAGAA ATCAGTTAAT CCTGATCCAG CCAGAGTGAA GTAATAAGAC GTGGCACAAT
ACATAATAAG ATAGGAGGCA GGAAATAGTT GAAATTTGGA TGTGGCAAGT AATTGCCTTA TAGCAAGTAA ATGTGCAATT
ATTTAACCTT AAATATTAAT AAATCAACAT AATGAAATAT CTTATGTAGA CAGTCTTCTG TAGGTTAGAT GTTCATACTT
CACTCATTGA AGGTATAAGA GAAAATAATA TTATGAAGAT CGTCTATAGT TCTGCACTTG CCTTTTCCTT ATTTTTTGAA
TTTGGAGATT TGCCATTAGA GGTATAGGGT TCCATGCATT GCCTTGTAGA ACCATATCTA TCTGGACCTG TAAATTTGGT
TCCCTCTTAT GTTTTGGTCC TCACCTAGGG TAAAAAAGGG TAAAAAAATA CCCACAGTGC AAAGAAGCTT CCTATTGAAA
AAA

>Vigan.05G089400.01
AAGAAGAAAA GGCTAGAAGA GTTATTATTA CCTCACATAT AACTAGTTTT TAATTTTTGT GACATATATT CTATGAACCC
AAAGGTCGAT TAAACTAAAA TTTTCCGTGA AAGGACAACG AAATACCGAA TTTTGTATAG TTGAAAGAAA AAAACAAAAT
AAGGAAAACT GAGCAGAAAG AATATCCAAT ACAGGGGCAC GGGAAGTCGC CGGAATTGCC GTAAATGCGG CATTTGATAA
ATCTAATGCC TCCGTGGACC TCTCACCCTG TCGTTCTCCT TTCTTCTATT CAAGGCCGTT AATTTCTCTC TCTCCCTCTC
TCTCTCTCTC CACACACACA CCTCTCTATC CCTCTCAACC ATGGCGGCGA TTCTCTCTTC TTCACTCTTT GCTTCCTCCT
GTCTCCCCAA ACCATTTTCT CATCCTCGAA CTCATACCGC TTCATCACTT CTCAAGGCTC GCGCTTCTCT CCTTCAGGAT
AACGAGGAAA AAGTGATCGT GCAGGACTCC TTCCCCTCCA AATCATCTCC ACTTCACACC ACTAATGGAA AATCTTCGGT
GGACTCAATT AGCACCTCTG CGTTTGAGAA AGGGATTATC AAGGTCGAAC AATCGGTCAA TATCTTTCTC ACGGATTCTG
TCATAAAGAT ACTTGATACT CTGTACCATG ATAGAAACTA CGCCAGGTTT TATGTGCTGG AGACTATTGC CAGGGTTCCT
TACTTTGCCT TTATGTCAGT TCTCCATATG TACGAGAGTT TTGGATGGTG GAGGCGGGCA GATTATCTGA AAGTACATTT
TGCTGAGAGC TGGAATGAAA TGCATCATTT GCTCATCATG GAAGAACTAG GAGGGAATGC TTGGTGGTTT GATCGGTTCC
TTGCTCAGCA TATAGCAATA TTTTACTATA TTATGACAGT TTTAATGTAT GCAATAAGCC CAAGAATGGC ATATCACTTT
TCTGAATGTG TAGAGAGTCA TGCATTTGAA ACTTACGACA AATTTATCAA GGTCCAAGGA GAGGAATTGA AAAAAATGCC
GCCTCCTGAG GTTGCTGTGA AATATTATAC AGGAGATGAC TTGTATTTAT TTGATGAATT TCAGACTTCC AGAGTTCCAA
ATTCTAGAAG ACCTAAGATA GACAATCTGT ACGACGTATT TTTAAATATC AGAGATGACG AAGCTGAACA TTGTAAGACA
ATGAAGGCTT GTCAAATCCA TGGTAACCTC CGGTCACCTC ATTCATATGC AGAGGATGGT GATGATGTTT CAGCCTGTGC
TCTGGAAGTA GATTGTGAAG GAATAGTAGA CTGTATAAAG AAATCAGTTA ATCCTGATCC AGCCAGAGTG AAGTAATAAG
ACGTGGCACA ATACATAATA AGATAGGAGG CAGGAAATAG TTGAAATTTG GATGTGGCAA GTAATTGCCT TATAGCAAGT
AAATGTGCAA TTATTTAACC TTAAATATTA ATAAATCAAC ATAATGAAAT ATCTTATGTA GACAGTCTTC TGTAGGTTAG
ATGTTCATAC TTCACTCATT GAAGGTATAA GAGAAAATAA TATTATGAAG ATCGTCTATA GTTCTGCACT TGCCTTTTCC
TTATTTTTTG AATTTGGAGA TTTGCCATTA GAGGTATAGG GTTCCATGCA TTGCCTTGTA GAACCATATC TATCTGGACC
TGTAAATTTG GTTCCCTCTT ATGTTTTGGT CCTCACCTAG GGTAAAAAAG GGTAAAAAAA TACCCACAGT GCAAAGAAGC
TTCCTATTGA AAAAA

>Vigan.05G089400.01
ATGGCGGCGA TTCTCTCTTC TTCACTCTTT GCTTCCTCCT GTCTCCCCAA ACCATTTTCT CATCCTCGAA CTCATACCGC
TTCATCACTT CTCAAGGCTC GCGCTTCTCT CCTTCAGGAT AACGAGGAAA AAGTGATCGT GCAGGACTCC TTCCCCTCCA
AATCATCTCC ACTTCACACC ACTAATGGAA AATCTTCGGT GGACTCAATT AGCACCTCTG CGTTTGAGAA AGGGATTATC
AAGGTCGAAC AATCGGTCAA TATCTTTCTC ACGGATTCTG TCATAAAGAT ACTTGATACT CTGTACCATG ATAGAAACTA
CGCCAGGTTT TATGTGCTGG AGACTATTGC CAGGGTTCCT TACTTTGCCT TTATGTCAGT TCTCCATATG TACGAGAGTT
TTGGATGGTG GAGGCGGGCA GATTATCTGA AAGTACATTT TGCTGAGAGC TGGAATGAAA TGCATCATTT GCTCATCATG
GAAGAACTAG GAGGGAATGC TTGGTGGTTT GATCGGTTCC TTGCTCAGCA TATAGCAATA TTTTACTATA TTATGACAGT
TTTAATGTAT GCAATAAGCC CAAGAATGGC ATATCACTTT TCTGAATGTG TAGAGAGTCA TGCATTTGAA ACTTACGACA
AATTTATCAA GGTCCAAGGA GAGGAATTGA AAAAAATGCC GCCTCCTGAG GTTGCTGTGA AATATTATAC AGGAGATGAC
TTGTATTTAT TTGATGAATT TCAGACTTCC AGAGTTCCAA ATTCTAGAAG ACCTAAGATA GACAATCTGT ACGACGTATT
TTTAAATATC AGAGATGACG AAGCTGAACA TTGTAAGACA ATGAAGGCTT GTCAAATCCA TGGTAACCTC CGGTCACCTC
ATTCATATGC AGAGGATGGT GATGATGTTT CAGCCTGTGC TCTGGAAGTA GATTGTGAAG GAATAGTAGA CTGTATAAAG
AAATCAGTTA ATCCTGATCC AGCCAGAGTG AAGTAA

>Vigan.05G089400.01
MAAILSSSLF ASSCLPKPFS HPRTHTASSL LKARASLLQD NEEKVIVQDS FPSKSSPLHT TNGKSSVDSI STSAFEKGII
KVEQSVNIFL TDSVIKILDT LYHDRNYARF YVLETIARVP YFAFMSVLHM YESFGWWRRA DYLKVHFAES WNEMHHLLIM
EELGGNAWWF DRFLAQHIAI FYYIMTVLMY AISPRMAYHF SECVESHAFE TYDKFIKVQG EELKKMPPPE VAVKYYTGDD
LYLFDEFQTS RVPNSRRPKI DNLYDVFLNI RDDEAEHCKT MKACQIHGNL RSPHSYAEDG DDVSACALEV DCEGIVDCIK
KSVNPDPARV K*