GBrowse Details

Vigan.05G089100.01

Basic Information:
Name: Vigan.05G089100.01
Multiple alignment
Variant Information
Position: Chr05:6806132..6808318 (+ strand)
Length: 2187
Functional Information:
Description: Similar to ACC oxidase. [Q2KTE6, Vigna radiata]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.06,67.99,502.31,56.60,192.75,1.65,134.15,34.53
Automatic updates:
Name: NM_001254970 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 1-aminocyclopropane-1-carboxylate oxidase-like (LOC100807427), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317289 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata 1-aminocyclopropane-1-carboxylate oxidase (LOC106776177), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6806132..6806266 (+ strand)
Length: 135
Type: five_prime_UTR
Position: Chr05:6806267..6806371 (+ strand)
Length: 105
Type: CDS
Position: Chr05:6806478..6806704 (+ strand)
Length: 227
Type: CDS
Position: Chr05:6807227..6807560 (+ strand)
Length: 334
Type: CDS
Position: Chr05:6807766..6808053 (+ strand)
Length: 288
Type: CDS
Position: Chr05:6808054..6808318 (+ strand)
Length: 265
Type: three_prime_UTR

>Vigan.05G089100.01 class=Sequence position=Chr05:6806132..6808318 (+ strand)
ATTTTTTCCT TTCTTAGCCT CTCCCAGAAG TTGAGTTCTA TAAATACAAC AGATTGCACC TCTGAAAGCA TCACTACTCA
CAGCATATCC TCACAATCAC ATAGTTGTTT AAAGCGATAG AAAAGAAAGA AAGAAATGGC AAACTTTCCA GTTGTTGACA
TGGGAAAGCT TAACACTGAA GAGAGAGGAG CTGCCATGGA AATGATAAAA GATGCTTGTG AGAACTGGGG TTTCTTTGAG
GTACTAATCA TATACGTCCC TCCCCACTCA CCAATCAAAT TTTATCATGC ATGCGTTTTT GTGAAAAAGG CTTAATTAAT
AAACTTTTTT GGTTTTTGCT TTGAAGTTGG TGAACCATGG TATATCCATT GAGTTGATGG ACACCGTGGA GAAGTTAACA
AAAGAGCACT ACAAGAAGAC TATGGAGCAA AGGTTCAAAG AAATGGTGGC CAACAAAGGT CTTGAGTCAG TTCAGTCAGA
AATCAGTGAC TTGGACTGGG AAAGTACCTT TTTTCTGCGC CATCTTCCAG TCTCCAATGT TTCAGAGAAC ACAGATCTTG
ATGAAGACTA CAGGTCACAC TTAATTACAT CAAGTCTATA TTTTTATCAA AATTTACAAA CTTAAGTTTG AAAAAACCTC
TTTGCAAACT CAGTTTGGGA AGTCAACCTT CCTTCGGTTA TTTCAATCTA AATTTCAAGG CAAAACTAAG ATCAGACTCA
TTACAATCAG ACCTATTTAA CAATAAAATT AACCAAAGTT TTCTTTCTTT GGTTTTACAT TTTGAAAGGA TGTTGTGACT
CTCCAAACTG TAAGGTTATG TTTAGTTTTC CTTCTCCCTC AACTCCAATT TATCCAATAA ACTCAGTTTC ACCTTATATG
TTTATAAAGG TACTTGCACA GATTATATTT GGTTTGAAAC AACAAAAAAG AAAGAAAAAG TACCAAAGCA AAATATGAAA
TCTATTTTGA AATTTATGTT TGTAAACTTC AATTAAATCA ATTCATGCAC TGATCTACCA AACCATACAC TCTTGTTCGT
TTGTGTTTAC TTTTGGTATA AAAGCTGTGT CTGACTATAT GTTTTGTTGT TTCAGGAAAA TAATGAAGCA GTTTGCAGTA
GAACTGGAGA AACTCGCAGA GCATCTTCTT GACTTGCTGT GTGAGAATCT TGGACTGGAG AAAGGGTACC TGAAGAAGGT
GTTCTATGGA TCGAAGGGCC CAAATTTTGG CACGAAAGTT AGCAACTACC CTCCTTGTCC GACCCCTGAT CTGATAAAGG
GCCTAAGAGC TCACACTGAC GCCGGTGGCA TTATCCTACT GTTCCAAGAT GACAAGGTCA GTGGACTGCA GCTCCTCAAG
GATGACCAGT GGATCGATGT CCCACCAATG CGTCACTCCA TTGTCATCAA CCTCGGTGAC CAACTTGAGG TACATACACA
CTACATACCC CACTACCGTA TAATGTTTCT CACCTGTCAC TTTTTCTTTA TACAACAAAA TATAAACGTT CCAATCACAG
ATCACACCCA ACGGCATAGT GATACATAGC CTTGGCTTTC AGTGCATTTT TATTGGCGTT AATTCCTCTA AATAATTTAT
CTGCTTTGGT CTTTTGTGGG CGTGACATTA ACAGGTCATA ACCAATGGCA AGTACAAGAG TGTCATGCAC CGAGTCATTG
CTCAGACGGA TGGCACCAGA ATGTCCCTGG CTTCCTTCTA TAATCCCGGT GATGATGCTG TGATTTCTCC AGCACCAGCC
TTGGTGAAGG AATCGGATGA AACAAGCCAA GTATACCCGA AATTTGTGTT TAATGATTAC ATGAAGCTCT ATGCTGGTCT
CAAGTTTCAG GCTAAAGAAC CAAGGTTTGA AGCTATGAAG GCCGTGTCAA GCGTTGATGT GGGGCCCATA GCCACAGTTT
GAGCCTCATA AATATATATA TATATATATA TATATATATA TATAAGTATG GGAACGTATG TGTGTTTATG TTAATAATAA
ACAAAGGCTA CTCAGCTCAG CGTATAGTGT TTGATGCCCT TGATAATTGG TATGGAAGCT TGTGCAGTAT AATCAAACCT
TATATATAAT ATTTATTAGT TCAAAAATAA AGTATTAGGT TGATCTTAGT TGGGGTGTGT GTGATCAGAG ATGTCGTCTG
TGATATGATG GTCAAGTTAA TGCGATG

>Vigan.05G089100.01
ATTTTTTCCT TTCTTAGCCT CTCCCAGAAG TTGAGTTCTA TAAATACAAC AGATTGCACC TCTGAAAGCA TCACTACTCA
CAGCATATCC TCACAATCAC ATAGTTGTTT AAAGCGATAG AAAAGAAAGA AAGAAATGGC AAACTTTCCA GTTGTTGACA
TGGGAAAGCT TAACACTGAA GAGAGAGGAG CTGCCATGGA AATGATAAAA GATGCTTGTG AGAACTGGGG TTTCTTTGAG
TTGGTGAACC ATGGTATATC CATTGAGTTG ATGGACACCG TGGAGAAGTT AACAAAAGAG CACTACAAGA AGACTATGGA
GCAAAGGTTC AAAGAAATGG TGGCCAACAA AGGTCTTGAG TCAGTTCAGT CAGAAATCAG TGACTTGGAC TGGGAAAGTA
CCTTTTTTCT GCGCCATCTT CCAGTCTCCA ATGTTTCAGA GAACACAGAT CTTGATGAAG ACTACAGGAA AATAATGAAG
CAGTTTGCAG TAGAACTGGA GAAACTCGCA GAGCATCTTC TTGACTTGCT GTGTGAGAAT CTTGGACTGG AGAAAGGGTA
CCTGAAGAAG GTGTTCTATG GATCGAAGGG CCCAAATTTT GGCACGAAAG TTAGCAACTA CCCTCCTTGT CCGACCCCTG
ATCTGATAAA GGGCCTAAGA GCTCACACTG ACGCCGGTGG CATTATCCTA CTGTTCCAAG ATGACAAGGT CAGTGGACTG
CAGCTCCTCA AGGATGACCA GTGGATCGAT GTCCCACCAA TGCGTCACTC CATTGTCATC AACCTCGGTG ACCAACTTGA
GGTCATAACC AATGGCAAGT ACAAGAGTGT CATGCACCGA GTCATTGCTC AGACGGATGG CACCAGAATG TCCCTGGCTT
CCTTCTATAA TCCCGGTGAT GATGCTGTGA TTTCTCCAGC ACCAGCCTTG GTGAAGGAAT CGGATGAAAC AAGCCAAGTA
TACCCGAAAT TTGTGTTTAA TGATTACATG AAGCTCTATG CTGGTCTCAA GTTTCAGGCT AAAGAACCAA GGTTTGAAGC
TATGAAGGCC GTGTCAAGCG TTGATGTGGG GCCCATAGCC ACAGTTTGAG CCTCATAAAT ATATATATAT ATATATATAT
ATATATATAT AAGTATGGGA ACGTATGTGT GTTTATGTTA ATAATAAACA AAGGCTACTC AGCTCAGCGT ATAGTGTTTG
ATGCCCTTGA TAATTGGTAT GGAAGCTTGT GCAGTATAAT CAAACCTTAT ATATAATATT TATTAGTTCA AAAATAAAGT
ATTAGGTTGA TCTTAGTTGG GGTGTGTGTG ATCAGAGATG TCGTCTGTGA TATGATGGTC AAGTTAATGC GATG

>Vigan.05G089100.01
ATGGCAAACT TTCCAGTTGT TGACATGGGA AAGCTTAACA CTGAAGAGAG AGGAGCTGCC ATGGAAATGA TAAAAGATGC
TTGTGAGAAC TGGGGTTTCT TTGAGTTGGT GAACCATGGT ATATCCATTG AGTTGATGGA CACCGTGGAG AAGTTAACAA
AAGAGCACTA CAAGAAGACT ATGGAGCAAA GGTTCAAAGA AATGGTGGCC AACAAAGGTC TTGAGTCAGT TCAGTCAGAA
ATCAGTGACT TGGACTGGGA AAGTACCTTT TTTCTGCGCC ATCTTCCAGT CTCCAATGTT TCAGAGAACA CAGATCTTGA
TGAAGACTAC AGGAAAATAA TGAAGCAGTT TGCAGTAGAA CTGGAGAAAC TCGCAGAGCA TCTTCTTGAC TTGCTGTGTG
AGAATCTTGG ACTGGAGAAA GGGTACCTGA AGAAGGTGTT CTATGGATCG AAGGGCCCAA ATTTTGGCAC GAAAGTTAGC
AACTACCCTC CTTGTCCGAC CCCTGATCTG ATAAAGGGCC TAAGAGCTCA CACTGACGCC GGTGGCATTA TCCTACTGTT
CCAAGATGAC AAGGTCAGTG GACTGCAGCT CCTCAAGGAT GACCAGTGGA TCGATGTCCC ACCAATGCGT CACTCCATTG
TCATCAACCT CGGTGACCAA CTTGAGGTCA TAACCAATGG CAAGTACAAG AGTGTCATGC ACCGAGTCAT TGCTCAGACG
GATGGCACCA GAATGTCCCT GGCTTCCTTC TATAATCCCG GTGATGATGC TGTGATTTCT CCAGCACCAG CCTTGGTGAA
GGAATCGGAT GAAACAAGCC AAGTATACCC GAAATTTGTG TTTAATGATT ACATGAAGCT CTATGCTGGT CTCAAGTTTC
AGGCTAAAGA ACCAAGGTTT GAAGCTATGA AGGCCGTGTC AAGCGTTGAT GTGGGGCCCA TAGCCACAGT TTGA

>Vigan.05G089100.01
MANFPVVDMG KLNTEERGAA MEMIKDACEN WGFFELVNHG ISIELMDTVE KLTKEHYKKT MEQRFKEMVA NKGLESVQSE
ISDLDWESTF FLRHLPVSNV SENTDLDEDY RKIMKQFAVE LEKLAEHLLD LLCENLGLEK GYLKKVFYGS KGPNFGTKVS
NYPPCPTPDL IKGLRAHTDA GGIILLFQDD KVSGLQLLKD DQWIDVPPMR HSIVINLGDQ LEVITNGKYK SVMHRVIAQT
DGTRMSLASF YNPGDDAVIS PAPALVKESD ETSQVYPKFV FNDYMKLYAG LKFQAKEPRF EAMKAVSSVD VGPIATV*