GBrowse Details

Vigan.05G087400.01

Basic Information:
Name: Vigan.05G087400.01
Multiple alignment
Variant Information
Position: Chr05:6652357..6657142 (- strand)
Length: 4786
Functional Information:
Description: Similar to 50S ribosomal protein L4. [V5N940, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L4/L1e (IPR002136)
Ribosomal protein L4/L1e, bacterial-type (IPR013005)
Ribosomal protein L4 domain (IPR023574)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.11,47.33,15.79,10.35,24.70,20.06,24.59,12.76
Arabidopsis thaliana homolog: AT2G20060.1
Automatic updates:
Name: NM_001255527 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L4-like (LOC100804238), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6652357..6652672 (- strand)
Length: 316
Type: three_prime_UTR
Position: Chr05:6652673..6652774 (- strand)
Length: 102
Type: CDS
Position: Chr05:6653550..6653723 (- strand)
Length: 174
Type: CDS
Position: Chr05:6654732..6654851 (- strand)
Length: 120
Type: CDS
Position: Chr05:6654960..6655067 (- strand)
Length: 108
Type: CDS
Position: Chr05:6655414..6655562 (- strand)
Length: 149
Type: CDS
Position: Chr05:6656319..6656436 (- strand)
Length: 118
Type: CDS
Position: Chr05:6656575..6656627 (- strand)
Length: 53
Type: CDS
Position: Chr05:6656747..6656864 (- strand)
Length: 118
Type: CDS
Position: Chr05:6656865..6657142 (- strand)
Length: 278
Type: five_prime_UTR

>Vigan.05G087400.01 class=Sequence position=Chr05:6652357..6657142 (- strand)
CTTTATTTGC TCTAGGTTGT AGTGTAGTTC GATACTTGTT TCATTTTTCA CACCGTTTTG TAAATTGATG AGGGGCCCTT
CCCTAATGAA AATACTGTGG TATAAATGGT GTAGTGGTTG AATTTGCGAA TTTAAGTTGC GGCGTGCAAT GCATTTGATT
AAACGTCTCG CTTCCTTCTC TGCTTTAGTT TGAGCCCTTT TAGTTGCATT CTTACCGTTG CTTCTGCTCT GAATTTCAAA
TGGGAAGGTG CAATCTATAG TAGATTGTTT CGTCAGTTAT GGCGGCGTTA ATTTCCAAAA GGCTACTACG TTGTTCTTCT
GGGTCCTTGC CTTCACTGGG ACGATGCTAC TTTAATTCAC CTAATGCTGC GTCTGCCCCT TTTTATCAAT CACGTTGTAA
GACCTTTTAT GTAGTTCCTT AACCGTGGAC AGTTGCCATT TCCCGTCAAT TTGATTTTTG TTCTTTTTTC CATCTTTTAT
AAATCTTTAT ATTTGCGATT ATTTTTTGTG CACAGATGTA TACAGCAGAT TATCTGGGGA AAGACTCCTT TCTGCAGAAT
CTTGTTTGGT ACATTACCAT AGCATTTGAA TATATTTCTA TATTTGTTAC TACTTGCAGG ATGAAAGCTT AATCAATGTA
GCTCTCTCTT GTTCTGACTT TAACTGACTC TTCTTTAATA ATGTGGTATA GTGTGTTTCA ATGTAGGTCA GATCAATGAT
CCAACAATTT TCTACTTCTA TTTTAACTCC TGTGCCTGAT GAGAGCGCAT TTCCGTCCGA TTTATTGTCC AAGAAGGCTC
TAGCAACATC TGAGCGTACT ATAGGTATGT ATGAAGGATA ATTTGAAGCA TCTTGTACCC CAGAATATAA CTGTGCTTCT
GTTTTTGCTG ACTTTGATAT TTATTTCTGA AAGGAGAGTC AATCGACTGC TAGGCATGAA TTCCAGTGTG GTTTAGATTA
TGAGATATTT TTTGTAGTCT ATTTTGTATG ATCTAGACTA ATATCTTCCG TGTCTATGTT TCTTCTTGAT TTGTACTACT
TCTGAAGATA CAAAATTTAC ACCAAATAAA AACATGTGGG ATTTACTGAA ATGCATTTCT ACATATTTAC ATGTCAGAAC
TTGCATATAG TTTGTTCTAA AATTGACCCT GTAAGTGAGA TGCTAATATT TTATTCATAC TTGATGATCT TATTCTGCTC
TGAAATTAAA GGAACTTGGG CCCAGAGTTT AACTTTTTGT GTCCTCCACA AAAATCATGT ATTTATTATC CTAAGTTACC
ATTAGTTTTC CCTAGTTTTT AATTGCACGA AGGCCACAAC CTTGTTATTA TTGGAAAATC CTTGTGGGGT TGCATGGGAA
TCACAGTGAA GGTGCTTATG TAACACTCTT CCAAAAAGCC TTTACCTAGG CACTGGTTAG GATTCTCATT ATTATAAATC
AAAATTTGGA GTGCTTCTTT TGATTGTTTC ACTGTTTTCT TCACTACCTA CCTTCTTTGG TGACATCTTG ATCACAGCAT
GTGCTGATTT TTGTCTCAAT AAGATTCTAG AGTGTCTTGA TAAAGTTCAA TATATTTTAG GGCTTTGCCA GGATCTTTTA
ATTCCAGTTA CCAACTTTCA TAATGAAGAC AAGGGCTTTA TGGTGTTACC TGGAGATGTT TTTGATTTGC CTATTCGGAA
GGACATTATT CATCGTGTCG TTAGGTGGCA GCTTGCAAAA CGACAACAGG TAGTGACTGC TTAATGTTTT GGAATCTGAA
GATTGTTTCT CATTGTCATT GCATATGTAC AATACAGAGG AAATGCTATA TTTATTTATT TTTTAGTCAA GATGGTGATA
TTTTTCTATA TTGCCTTTTA GTAATTTTGG GATTGAGGCA AGCATTTTGG TTTGGGACCA AACTATAATT TAGAATGTCT
ATTCAAATGT TTTAATGATA AAATGTTTTC ACTGTTATCG AAGGCGTAAT AGTTGAATAT ATGCACACAC ATATTATCTA
GGAACATGGA TCTAAATTTA GCTATGGAGT CTCTATGAAA ATATCATATA TTTTGCTAAT TGATTTGGTC AACAGGGGAC
TCATTCAACA AAAACTATAA GTGAGGTCAG TGGGACTGGA AGAAAGCCTT GGAATCAAAA GGGAACTGGT AGAGCAAGGC
ATGGTTCATT GCGTGGGCCT CAGGTAGTGG AGCATTCTGC TCATTACTTG ATCATCTTTA TTCCTTCACA TTTCTTCTGT
TCTTGTTTTT TTCAGCAGTT TGAAAATAAT AAATTTTTTG AATGGTAACA GTTCAGGGGT GGTGCCACTA TGCATGGCCC
CAAGCCTCGA AGCCATGCTT TCAAAGTCAA TAAGAAGGTT CGGCGTCTAG GGCTAAAGAT TGCCTTGTCC GCTCGTGCAG
CAGAAGGAAA GGTGAGTTTC CCCCACCCAT GACCTTATTC ACCGTCAAAA ATAAAAATAT GGCATCTCTA CGTTATTCTA
TCTCCTACAT GAGTGTTCAT TCTTGCTTAT ACTCAATATA GTGTGATTTT TCAGTTTTCA CTTCTGGAAG ATTTGGTTTC
TATAATTTAC AAGTAAATTG TTTAATGGTT TAGTAGCCTA ACTGAAAAGA TACACGATTT TTTTATTTTT TGTAAGGGTT
CCTTTTGTTG TTGATATCGA AATTAAAGGT ATAACATATA AGGTATAAGA TATTCTTAGT TCAGTGAAGT GATTGTGTTG
TCAGCCACAC CTCAGCCTAC CTGGTTGACA ATCAATCATA ATGTTTTTAT TACCTCTTTG ACTTTTTAAT TATATATCAT
TTAACGTAAA TATATTTGAC GATTTCATAT ACTTATGGAA GTAACCAATG TGGGAACTTC TTTCAAATGA ACACCTTCAT
GTGTATATCT TCACAGAATT GTGGTTGGGG TGTAGGGAAA ATTGAAGTAG GAACAAAGGA ATCATGCATC TAGATTTATG
ACGAGGAATC TGAGTGCAAA GATCTTAAGA TCATTTATAA TATGTTAAGT GTAATAAGCC CTGCTCAGAA TGCTTGCCCC
CGACTAAACT TGACACTCTA GAGTCTGGTT GTTATCAGCT AGAAATGTGA CTACATAAAT ACAATAAAGC CTCATAAAGG
AGCGTAACGG GAAACTAGGA AAAAGAAAAT CAAATTATGA CAATGCTCGT ACAATAGCTT TCCTTTCCTT ACTGCTTTTG
TCAAGGTATA ATGGTTATTT TTGGCATGTA TTCCTATCCT GATCCTGATA ATCGTATGCT CTGATATGAT AGATCGTATT
TCTTTTAGCT GTTTAGTATA TAGCGTTTTT GCTTTCATCC AATAATTATC TTGTTTGTCC TTATTTTGTT TTTTATTACT
GCATTATATC TGACATAAGA GTTTCTTCGT GCTAATATTC TGGGGAACTT TGTTTACAGC TTCTTGTGTT TGAGGATCTG
GAGGTTCTCA CACATAAAAC CAAAAACATT GTGAAGTATT ACAATCAAAT GGAGAGCACC AAGAAACTTC TGCTTGTGGA
TGGCGGGCCT ATAGATGAAA AGTTAAAATT ATCTACACAA AATCTACACT ATGTTAACAT ACTTCCCTCC ATTGTAAGTT
TCAGTTTTTA TCCATTTGAA ATTTATAATG TTTCTTAGAG TCGAAGCATT TCCAACAGTG ACAACAGTAC ATGGATTAAT
AATCTATTGA CACAATTGAG ATCCCCAATT GATCATATAC GGCAATAGAG CTTATATGGT TTGGGCAATT TTCATTTCAT
GAGCTAGTCA TTGGGGTTGA GACCGAAATT GAAGATAATG TCAAAGCCTA TAATATTTTA TATGGGGCCT CAACTGTTAA
AAAAAGAACC TGGCTCGGCA GCTTTCCCTC AATCTTACAT TAGATACAAT CCTTAGCATT AGGGAGTGGG TTAAAATCTC
ACGTAGATTA TATATGTGAC TAAAACAGAG TTTATAAGGG CTTTGGGCAG TCCTCACTTC ACGAGTTCGC TCTTGGAATT
GAATTAGGCT CAACCTAGAT ACCATTGGCT CCATCTAACA ACAAATTTTT AGTAAAACTA TTTATACCAA ATTCTTTTTT
AATGGTTTGT CCCAGCTGCT TTATTCATTA GAACATCTAA GATCGAACGG AAGATGGTCC TAAACGTGTT TGAGTAGCCA
TCGGGGACAA AATAGTTAAA GACGATCTCC ATTTGATCAA ATAATCTGTA CCACTTGTGG TATGATGCAA ATTATTCCAA
AATTTCACCT CCGAAACATT GGTAATTCAT GCCTCATTGA ATCTTGTAGA TTTTGCTAGT TCCAAAGTTT TTCCTAAAAC
AGTATTTTTT TTTATATTAT ATAGTTATGT TTAACATCTT TTTTGTAGGG CTTGAATGTC TACAGCATTT TGCTGCATGA
CACATTGGTG ATGTCCCAAG CTGCGGTGAA CAAAATTGTT GAGCGGATGC GTACTCCAAT TAATCGTTGA GGCTAAAACT
ATTTTTTTGT GCTTTACTTC TTTTACTCAA AAATAGGAAT TGTATCCCAT GTCCCCATTT CTGTAACATA AAGAGATCCA
ATGAGTGGTA CGAGATTTCT GTTAAAAATT ACATAAGTGA GGCAACTTAT GCCATTTTGC TCGTGTTGAA GGTGAACTTA
GGAAATTGTT GGTCTAATAT GAATGTTCAA GGGGTTAGGT TTATCATGTT TTCCCATGAC TAAACTCGTA TCTTTTTCAA
TCTTTTCACA TGCATAAGAT TTGATAAACC GGCATAAGTC ATCCCTGTCC TTCGATCATG AATTTA

>Vigan.05G087400.01
CTTTATTTGC TCTAGGTTGT AGTGTAGTTC GATACTTGTT TCATTTTTCA CACCGTTTTG TAAATTGATG AGGGGCCCTT
CCCTAATGAA AATACTGTGG TATAAATGGT GTAGTGGTTG AATTTGCGAA TTTAAGTTGC GGCGTGCAAT GCATTTGATT
AAACGTCTCG CTTCCTTCTC TGCTTTAGTT TGAGCCCTTT TAGTTGCATT CTTACCGTTG CTTCTGCTCT GAATTTCAAA
TGGGAAGGTG CAATCTATAG TAGATTGTTT CGTCAGTTAT GGCGGCGTTA ATTTCCAAAA GGCTACTACG TTGTTCTTCT
GGGTCCTTGC CTTCACTGGG ACGATGCTAC TTTAATTCAC CTAATGCTGC GTCTGCCCCT TTTTATCAAT CACGTTATGT
ATACAGCAGA TTATCTGGGG AAAGACTCCT TTCTGCAGAA TCTTGTTTGG TCAGATCAAT GATCCAACAA TTTTCTACTT
CTATTTTAAC TCCTGTGCCT GATGAGAGCG CATTTCCGTC CGATTTATTG TCCAAGAAGG CTCTAGCAAC ATCTGAGCGT
ACTATAGGGC TTTGCCAGGA TCTTTTAATT CCAGTTACCA ACTTTCATAA TGAAGACAAG GGCTTTATGG TGTTACCTGG
AGATGTTTTT GATTTGCCTA TTCGGAAGGA CATTATTCAT CGTGTCGTTA GGTGGCAGCT TGCAAAACGA CAACAGGGGA
CTCATTCAAC AAAAACTATA AGTGAGGTCA GTGGGACTGG AAGAAAGCCT TGGAATCAAA AGGGAACTGG TAGAGCAAGG
CATGGTTCAT TGCGTGGGCC TCAGTTCAGG GGTGGTGCCA CTATGCATGG CCCCAAGCCT CGAAGCCATG CTTTCAAAGT
CAATAAGAAG GTTCGGCGTC TAGGGCTAAA GATTGCCTTG TCCGCTCGTG CAGCAGAAGG AAAGCTTCTT GTGTTTGAGG
ATCTGGAGGT TCTCACACAT AAAACCAAAA ACATTGTGAA GTATTACAAT CAAATGGAGA GCACCAAGAA ACTTCTGCTT
GTGGATGGCG GGCCTATAGA TGAAAAGTTA AAATTATCTA CACAAAATCT ACACTATGTT AACATACTTC CCTCCATTGG
CTTGAATGTC TACAGCATTT TGCTGCATGA CACATTGGTG ATGTCCCAAG CTGCGGTGAA CAAAATTGTT GAGCGGATGC
GTACTCCAAT TAATCGTTGA GGCTAAAACT ATTTTTTTGT GCTTTACTTC TTTTACTCAA AAATAGGAAT TGTATCCCAT
GTCCCCATTT CTGTAACATA AAGAGATCCA ATGAGTGGTA CGAGATTTCT GTTAAAAATT ACATAAGTGA GGCAACTTAT
GCCATTTTGC TCGTGTTGAA GGTGAACTTA GGAAATTGTT GGTCTAATAT GAATGTTCAA GGGGTTAGGT TTATCATGTT
TTCCCATGAC TAAACTCGTA TCTTTTTCAA TCTTTTCACA TGCATAAGAT TTGATAAACC GGCATAAGTC ATCCCTGTCC
TTCGATCATG AATTTA

>Vigan.05G087400.01
ATGGCGGCGT TAATTTCCAA AAGGCTACTA CGTTGTTCTT CTGGGTCCTT GCCTTCACTG GGACGATGCT ACTTTAATTC
ACCTAATGCT GCGTCTGCCC CTTTTTATCA ATCACGTTAT GTATACAGCA GATTATCTGG GGAAAGACTC CTTTCTGCAG
AATCTTGTTT GGTCAGATCA ATGATCCAAC AATTTTCTAC TTCTATTTTA ACTCCTGTGC CTGATGAGAG CGCATTTCCG
TCCGATTTAT TGTCCAAGAA GGCTCTAGCA ACATCTGAGC GTACTATAGG GCTTTGCCAG GATCTTTTAA TTCCAGTTAC
CAACTTTCAT AATGAAGACA AGGGCTTTAT GGTGTTACCT GGAGATGTTT TTGATTTGCC TATTCGGAAG GACATTATTC
ATCGTGTCGT TAGGTGGCAG CTTGCAAAAC GACAACAGGG GACTCATTCA ACAAAAACTA TAAGTGAGGT CAGTGGGACT
GGAAGAAAGC CTTGGAATCA AAAGGGAACT GGTAGAGCAA GGCATGGTTC ATTGCGTGGG CCTCAGTTCA GGGGTGGTGC
CACTATGCAT GGCCCCAAGC CTCGAAGCCA TGCTTTCAAA GTCAATAAGA AGGTTCGGCG TCTAGGGCTA AAGATTGCCT
TGTCCGCTCG TGCAGCAGAA GGAAAGCTTC TTGTGTTTGA GGATCTGGAG GTTCTCACAC ATAAAACCAA AAACATTGTG
AAGTATTACA ATCAAATGGA GAGCACCAAG AAACTTCTGC TTGTGGATGG CGGGCCTATA GATGAAAAGT TAAAATTATC
TACACAAAAT CTACACTATG TTAACATACT TCCCTCCATT GGCTTGAATG TCTACAGCAT TTTGCTGCAT GACACATTGG
TGATGTCCCA AGCTGCGGTG AACAAAATTG TTGAGCGGAT GCGTACTCCA ATTAATCGTT GA

>Vigan.05G087400.01
MAALISKRLL RCSSGSLPSL GRCYFNSPNA ASAPFYQSRY VYSRLSGERL LSAESCLVRS MIQQFSTSIL TPVPDESAFP
SDLLSKKALA TSERTIGLCQ DLLIPVTNFH NEDKGFMVLP GDVFDLPIRK DIIHRVVRWQ LAKRQQGTHS TKTISEVSGT
GRKPWNQKGT GRARHGSLRG PQFRGGATMH GPKPRSHAFK VNKKVRRLGL KIALSARAAE GKLLVFEDLE VLTHKTKNIV
KYYNQMESTK KLLLVDGGPI DEKLKLSTQN LHYVNILPSI GLNVYSILLH DTLVMSQAAV NKIVERMRTP INR*