GBrowse Details

Vigan.05G087100.01

Basic Information:
Name: Vigan.05G087100.01
Multiple alignment
Variant Information
Position: Chr05:6619701..6621423 (+ strand)
Length: 1723
Functional Information:
Description: Similar to Chaperonin-like RbcX protein. [XP_007026166.1, Theobroma cacao]
InterPro: Chaperonin-like RbcX (IPR003435)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.51,2.06,0.00,36.55,0.93,1.69,1.60,0.27
Arabidopsis thaliana homolog: AT4G04330.1
Automatic updates:
Name: NM_001255363 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100803175 (LOC100803175), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6619701..6619802 (+ strand)
Length: 102
Type: five_prime_UTR
Position: Chr05:6619803..6619950 (+ strand)
Length: 148
Type: CDS
Position: Chr05:6620128..6620222 (+ strand)
Length: 95
Type: CDS
Position: Chr05:6620492..6620609 (+ strand)
Length: 118
Type: CDS
Position: Chr05:6620739..6620755 (+ strand)
Length: 17
Type: CDS
Position: Chr05:6620827..6620889 (+ strand)
Length: 63
Type: CDS
Position: Chr05:6620987..6621061 (+ strand)
Length: 75
Type: CDS
Position: Chr05:6621062..6621423 (+ strand)
Length: 362
Type: three_prime_UTR

>Vigan.05G087100.01 class=Sequence position=Chr05:6619701..6621423 (+ strand)
TGATTACAAC CTCACCATGG TGTTCACATG CTTAAATTGG CATCATAAAA ATTAAGGCCT TTTTCCAATA TACATAACAC
AAATTTTTAA CACTGCTTAG CCATGGAATC TTCTGCAACT CTACCTCTTT CTCAGCTTCC TTTTGTGTAC CCTGCAACAC
CCAGGAGTAA CAAAGCTTAC CCCTTTTGGC CTTGCAAGCG AAGAAGCTCG CTGCCAACAC GCTTACGCTG CAACAAGATG
TATGTACCAG GTAATTGGTT CGGTTACTTT TCTACTCTGT TCCTCTTCTC CATTATGATT AAAAGGAACT AACGTTAACC
ACAAAAATAC TGGCAATGAA AAAGAATTTG TCACTGATAC ATTGATTTGT GACCAAATTA GCATTAGTTA TATGTGATGG
GGTTGTGTTA TATCGATTGA GATGCAGGAT TTGGAGAAGC ATCACCAGAA GCAAAGGCGG CTAAACACCT CCACAATTTC
TTCACCTACG TAGCTGTGAA GATTGTTGCT GCTCAACTTG AGGTTCCTTC TCCTTATTGG CTTTGACAAC CCCTTTATTG
TTGGATGAAA TTTTTGTGAA TTTATATATA GAGAGATTTA GACCTCCAAC GTTGTCAATC TGATCCAAGG CTAAATAATA
ATAACAATGA TTTGTCAGTG GATTTACTTT GATCCACGTT GTTCAACTTA ATTCAGTTTT TTTCGTTTCT TTAATTTAAT
ATCTATTTCT AGTGGTTAAT ACTTTTTTGT ATCTAATAAT GTCATCTGTC AAATAATATT TCGCGGAGCA GAGCTACAAT
CCTGAGGCAT ATGAGGAGCT GATTGAATTT CTTGGTAGAC ACTCGTTGAA TGATGGTGAC AAGTTTTGTG CCGCCATGTT
CAGAGAATCA TCAAGACATA AGAACTTAGG TAACGGCTAT TATCAAGCCA CTCAATCCTC AATTGGTATC TAATTATTAA
TATCTGACAA ACAACTTTGT TGTGTATTGC CTTTGTATGA ACGAAATCTC CGAACTAATC TGGCATGTAC ATGAATAGCC
CTACGCATAA TGGAGGTAAG CAGATTTTTA TATTATCCAT CACCTGTTAA GGAGTTATGA TTAAATACAA CGACGTATGA
TTATAGGTGA GATCAGCATA CTGCAAAAAT GATTTTGAAT GGGACAACTT GAAGCGCCTA GCCCTCAAGG TTTGTAGCAC
AATAACGTTT ATGTTCAGGA CTGAAATTTA TTCAACTTTC TGTATGATTG ACTAATGTTT ATATTTATGC CCTTATTGTC
TTGTAGATGG TCACAGAATC TAACACGAGG CTCATGACGG AATATGTCTT AGAAACCAGT CATGTTGAAA GTGAGAAGTG
AATAGTCTTC AACCAAAGTA TTAGCCCCTT TATTCCTTCC GATCGAAGAG GAGATAGGGC AATATACCTA TTTATATGTA
CAGAAAGAAC TGACACGTTT ATCAATCAAT TTTATACTCC AGCATTAGCA AGGTTATGAT TAAAAAAACA GTTAGATCAT
AGAATGGTTA GACAAATTCG ATACACAAAT TGATAATCAA CAGATATATT GTTTGGTTGT GTTTAAAAGC TTCAAAATTT
TAAATACACA TTTGACGCAT GGAATGTGTG AAATCCCTTT CGATTTAAGT CAAACCGTTT ATAGAAACAC ACTTTTACTT
GGGAGTAAAA GAATTGTCTG GTCCAAATAT GTAAACATTC AAG

>Vigan.05G087100.01
TGATTACAAC CTCACCATGG TGTTCACATG CTTAAATTGG CATCATAAAA ATTAAGGCCT TTTTCCAATA TACATAACAC
AAATTTTTAA CACTGCTTAG CCATGGAATC TTCTGCAACT CTACCTCTTT CTCAGCTTCC TTTTGTGTAC CCTGCAACAC
CCAGGAGTAA CAAAGCTTAC CCCTTTTGGC CTTGCAAGCG AAGAAGCTCG CTGCCAACAC GCTTACGCTG CAACAAGATG
TATGTACCAG GATTTGGAGA AGCATCACCA GAAGCAAAGG CGGCTAAACA CCTCCACAAT TTCTTCACCT ACGTAGCTGT
GAAGATTGTT GCTGCTCAAC TTGAGAGCTA CAATCCTGAG GCATATGAGG AGCTGATTGA ATTTCTTGGT AGACACTCGT
TGAATGATGG TGACAAGTTT TGTGCCGCCA TGTTCAGAGA ATCATCAAGA CATAAGAACT TAGCCCTACG CATAATGGAG
GTGAGATCAG CATACTGCAA AAATGATTTT GAATGGGACA ACTTGAAGCG CCTAGCCCTC AAGATGGTCA CAGAATCTAA
CACGAGGCTC ATGACGGAAT ATGTCTTAGA AACCAGTCAT GTTGAAAGTG AGAAGTGAAT AGTCTTCAAC CAAAGTATTA
GCCCCTTTAT TCCTTCCGAT CGAAGAGGAG ATAGGGCAAT ATACCTATTT ATATGTACAG AAAGAACTGA CACGTTTATC
AATCAATTTT ATACTCCAGC ATTAGCAAGG TTATGATTAA AAAAACAGTT AGATCATAGA ATGGTTAGAC AAATTCGATA
CACAAATTGA TAATCAACAG ATATATTGTT TGGTTGTGTT TAAAAGCTTC AAAATTTTAA ATACACATTT GACGCATGGA
ATGTGTGAAA TCCCTTTCGA TTTAAGTCAA ACCGTTTATA GAAACACACT TTTACTTGGG AGTAAAAGAA TTGTCTGGTC
CAAATATGTA AACATTCAAG 

>Vigan.05G087100.01
ATGGAATCTT CTGCAACTCT ACCTCTTTCT CAGCTTCCTT TTGTGTACCC TGCAACACCC AGGAGTAACA AAGCTTACCC
CTTTTGGCCT TGCAAGCGAA GAAGCTCGCT GCCAACACGC TTACGCTGCA ACAAGATGTA TGTACCAGGA TTTGGAGAAG
CATCACCAGA AGCAAAGGCG GCTAAACACC TCCACAATTT CTTCACCTAC GTAGCTGTGA AGATTGTTGC TGCTCAACTT
GAGAGCTACA ATCCTGAGGC ATATGAGGAG CTGATTGAAT TTCTTGGTAG ACACTCGTTG AATGATGGTG ACAAGTTTTG
TGCCGCCATG TTCAGAGAAT CATCAAGACA TAAGAACTTA GCCCTACGCA TAATGGAGGT GAGATCAGCA TACTGCAAAA
ATGATTTTGA ATGGGACAAC TTGAAGCGCC TAGCCCTCAA GATGGTCACA GAATCTAACA CGAGGCTCAT GACGGAATAT
GTCTTAGAAA CCAGTCATGT TGAAAGTGAG AAGTGA

>Vigan.05G087100.01
MESSATLPLS QLPFVYPATP RSNKAYPFWP CKRRSSLPTR LRCNKMYVPG FGEASPEAKA AKHLHNFFTY VAVKIVAAQL
ESYNPEAYEE LIEFLGRHSL NDGDKFCAAM FRESSRHKNL ALRIMEVRSA YCKNDFEWDN LKRLALKMVT ESNTRLMTEY
VLETSHVESE K*