GBrowse Details

Vigan.05G086000.01

Basic Information:
Name: Vigan.05G086000.01
Multiple alignment
Variant Information
Position: Chr05:6548471..6552128 (- strand)
Length: 3658
Functional Information:
Description: Similar to cleavage and polyadenylation specificity factor subunit 5-like. [XP_004496579.1, Cicer arietinum]
GO: Biological Process: mRNA polyadenylation (GO:0006378)
Cellular Component: mRNA cleavage factor complex (GO:0005849)
Molecular Function: mRNA binding (GO:0003729)
Molecular Function: hydrolase activity (GO:0016787)
InterPro: NUDIX hydrolase domain (IPR000086)
NUDIX hydrolase domain-like (IPR015797)
Cleavage/polyadenylation specificity factor subunit 5 (IPR016706)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.86,10.42,19.82,23.85,25.71,17.19,30.91,14.02
Arabidopsis thaliana homolog: AT4G25550.1
Automatic updates:
Name: NM_001250112 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306068 (LOC100306068), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6548471..6549239 (- strand)
Length: 769
Type: three_prime_UTR
Position: Chr05:6549240..6549311 (- strand)
Length: 72
Type: CDS
Position: Chr05:6549638..6549748 (- strand)
Length: 111
Type: CDS
Position: Chr05:6549911..6549997 (- strand)
Length: 87
Type: CDS
Position: Chr05:6550113..6550186 (- strand)
Length: 74
Type: CDS
Position: Chr05:6550286..6550379 (- strand)
Length: 94
Type: CDS
Position: Chr05:6551488..6551533 (- strand)
Length: 46
Type: CDS
Position: Chr05:6551780..6551898 (- strand)
Length: 119
Type: CDS
Position: Chr05:6551899..6552128 (- strand)
Length: 230
Type: five_prime_UTR

>Vigan.05G086000.01 class=Sequence position=Chr05:6548471..6552128 (- strand)
TGCGAGTTTG GGAGGGAGGG GATAGGGCCC ATGACCCGGT GTTGAGATTT AACAGTACGA GAGTTGACAA GAGTAAAATG
AACATCCAAA TCCTAATCTC AAAAATATTA CAGACCTAAT TCAAAAGCGC AATCTAGCCA AGTCTTCTGT CTCTTTTTCT
TTTCTTCAAT CTGTGTCTTC TCACCATTCA GTTCAATTCG ATTCTAATCG AAAAGAAAAG AGAAGAAAAA ATGGTGTCGT
CGCAAGTTGT GAATACATAC CCGTTGTCGA GCTACACGTT TGGCACAAAG GAGCCCAAGA TGGAGAAGGA CACCTCCGTC
GCCGATCGTC TCGCTCGCAT GAAAGTCAAG TGCGTATCTT CTTTCTTTTC TTCTTCTTTT CCAAACCCTA GATTAAACAG
CCCCTTTTAC TTTAATTTTC TTCTAGACAT GATATGAAAT CTTGACTACT CTTCCCTCCT GCTTCAAAAC GGAAGAGTAG
AAAAGAGATT ATAACCTTCT CCTGTTATAA TTTGACCTGT TCTTTGTCCT ATGTGTTGCT CAAATTAGTT ACATACCCTA
AGGCTTCTCA AATATCATCA TTTCCTTTGT TTCAGCTATA TGAAGGAGGG AATGAGGACC AGTGTGGAAG GGATTTTACT
GGTATGTATG TTAACCTTTT TTTTCTTTTT TTCTTTTTCT ATTTTTTTTT ATCAGCGTAG GTGGTGGCGA CACTAATTTT
TTATCTGGTT ATTGTGTGTT TGTACAATGT TTTCCTGCTT TCTTCTAATA AATCTGTTGT TATTATGACA CCATGAGATT
TACTTTTAGT ATAGGGGCCA AGTTGAAGGC AATTGTTTAA ATTGAAAGTG ACCATAGCAT ATGCATGGTA CTCATCTTTT
CAAGTTGGCT ACTAGACTAG AAGCCAGTGT TGAATACTTG TTGGATAAAT CTATGGTTGG TCACAAAATT ATTTGTATTA
AATTGAAAAA CAGTGTATGA CATATGGTGT CATCTTCTAC CTGTTTTAGG GGTTTTGATT TAAGATTTTT TTGGATGGGG
GAGAGATTGT GCAGTAGGTA CAGGACAATA TAGATGTTTA GATCTTTTTA CAGTGTTCTA TTGTTGGAGC TAATGTTGGT
TGGGATTTGA TTATACTTGT GAAGTGTGTT AATTGATTTC AATAACTCAG GTGAAATTAT AAGATTAGTA TGTCAATAAT
TGGATGCGTA ATTATCTAAA CTGAAGAGAC GTTCCACTGT TATATAATCT ACTCCCCCTG TGCAACTTTA ATATTGTTGA
ACATTTGAAG CTAATTGACT ATATCAGTAG ATCTATAAAA TTGCATTTAA GTGTTTCTCT AGTTGACCTC GTAGTTATTA
GGTCTAATCA TGGAGACATC CTCTCTGGTC ACGGGGATGA AGTTGTGTAC ATATTTGACC TTCCCCAACC CCACATTATG
AGAGTTTCAT GTACATACCA CCCCCCTTTG GAACTTTGGC TCACTAAGAC CATAAATATC CATCTAGGTG GAGAAAAAAT
TGATACTCTT TTGGTGGGAT CCTTTACTTA CAGCTGATTA GTTCTGCGTT GAATTCATCA TCTACACTTA GATTTTTACT
TTTTCAATTA CTTATTCCTA TAATACGGTT TCCCACTAGG TTCTTGTTAA TTCTCTCATC TATGGCATTA CTTTCATAAG
AAAAGAGTTT CATCTAATTT CCTTTAAGAT CGTGTGTCCT ATCTCATCTT TATGCCTTCA ATGTTGCAGG TTCAAGAACA
TAATCATCCA CATATACTTC TTCTGCAAAT TGGAAACACA TTTTGCAAAC TCCCGGGTGG TCGTCTCAAA CCAGGAGAGA
ATGGTAAGCT ATCTTCTGTA TTGCGAACTG GATAGTTTGA AAATAGAAGC TTGTGATTAT GCTTATTTAC TTGTTTTTGG
GGTTATTTAA TGCTGTTTAC AGAAATTGAG GGCTTGAAGA GAAAGTTGAC TAGCAAGCTT GGTGCTAATT CACCAGCTCT
TGTGCCTGAC TGGCAGGTAT TATTACTTAC TCTTTACTCA TGTACTTTGG AGAGCCATGT TAAATTTGCC ATTCTGTGAC
AATCCACATG TTTTTTGTTG CTCATTTGCA TTTATTTCTT GAAAACTTCA GATAGGTGAG TGTGTTGCAA TCTGGTGGAG
GCCAAATTTT GAAACCATAA TGTATCCATA CTGCCCTCCT CATATCACAA AACCCAAGGT AATTTTGAAA CCATAATGTA
TCCATAATGC CCTCCTCATA TCACAAAACC CAAGGTAATT TTGGGAAAGA ATGACATTAA TACATTGGTT CCTGGTTCCC
TTGGTTAGTT GGTTAGTTGG TCTGTGCTTA CAATAATACC ACTGAATATC TTGTATGCAG GAGTGCAAAA AACTTTTCCT
TGTTCACTTA TCTGAAAGGG AATACTTTGC AGTGCCCAAA AATTTAAAAC TACTTGCTGT GCCATTGTTT GAACTCTATG
ACAATGTTCA GGTATGGTGT TATAGTTCTT TTCCGTTACT GGATTGTTGA ATGAACTGTT TATAATTTGA AGAATTCTTC
ATTATCATTG GTTGTCCAAT GGAAAACAAC GTGTAATAAC TGAAACTATT TCAAGTAAGG GGATGCTTTC AATTGATTTG
GGAGATTATA GGACCCATCT CAAATGTTTT ATTTTTTTGG GCATATGTTC GAAGTTTTCA TCTACAGACT GATCATGGTA
TTAATTTTTA AACTTATCCA CATAGGTATG CTTGTCAGTC AAAATATGTT AAACTTTTTT CCGTGTCTTA TGAATTTTGT
GTATCATTTG TTTGCAGAGA TACGGTCCAG TTATATCCAC CATTCCTCAG CAGCTATCCA GATTCCAGTT TAAAATGATC
ACTAATTGAA CGTAAATTTG AAGCTCACAT GCTGATAAAT TACTACTGTC TTTTTTATTT TGGTAACCAG GACTGCCATT
ATCATTGTTG CGTAGAGAGA ACTGAGTTTT GAAGTGAGTT TCTGAGTAGA ATAGTTATTT AGTGACATGC TTTGTCTGTA
TTTATTCCTT GCACTATGGG TAGACCTCGA TTATCAACCA TCAACCGAAA AGATGCAATC AAGTATTCAA CTTGTAGGTT
TATGCCTAAT ACCCCAGTAG AAATCAAGGT GATAAAGAAG TGCCTTCTGT TCATGTCTGT TGCTTCTGCC CTCCTCAGGT
TGCCAATATT GGTGTGGAAA GGGGCATTGG TTTTCGTTGC CAGTTTTTCT GGTGAAAGGC ATTGAATGGC AAAAAGTATG
CATTTGAAAT TCAAATATAA TCCTCGTGGG AAAATTTATA CAACAATGAC TAAAATTTAA ATCCCTCTTT GACTTATTAT
AGACAGTTTT AGCATATCCT ATTTCCGAAG TTGCTGCTTG TGCACGCTTG GTGAAGTAGC ACTTGATTCA AATATTGATA
GTTCATTTTC TTCTTTATAG TTTCCTTCAC CTATTAAAGT CCAAGGGCCT GGTGTGATTT CTTTTATTGA TAATAACGAG
TAAACGTCAA TAAGACCGAA AATAGAAAAT AGTATTAGAG GTGGAAGGAA GCATTCCCAA TGACAATGTA CATAATAGTA
GTGCTGTATT TTGGGAAAAA GTTGTAATTA TTTTTATATA TATGGCCATG GATTGGAT

>Vigan.05G086000.01
TGCGAGTTTG GGAGGGAGGG GATAGGGCCC ATGACCCGGT GTTGAGATTT AACAGTACGA GAGTTGACAA GAGTAAAATG
AACATCCAAA TCCTAATCTC AAAAATATTA CAGACCTAAT TCAAAAGCGC AATCTAGCCA AGTCTTCTGT CTCTTTTTCT
TTTCTTCAAT CTGTGTCTTC TCACCATTCA GTTCAATTCG ATTCTAATCG AAAAGAAAAG AGAAGAAAAA ATGGTGTCGT
CGCAAGTTGT GAATACATAC CCGTTGTCGA GCTACACGTT TGGCACAAAG GAGCCCAAGA TGGAGAAGGA CACCTCCGTC
GCCGATCGTC TCGCTCGCAT GAAAGTCAAC TATATGAAGG AGGGAATGAG GACCAGTGTG GAAGGGATTT TACTGGTTCA
AGAACATAAT CATCCACATA TACTTCTTCT GCAAATTGGA AACACATTTT GCAAACTCCC GGGTGGTCGT CTCAAACCAG
GAGAGAATGA AATTGAGGGC TTGAAGAGAA AGTTGACTAG CAAGCTTGGT GCTAATTCAC CAGCTCTTGT GCCTGACTGG
CAGATAGGTG AGTGTGTTGC AATCTGGTGG AGGCCAAATT TTGAAACCAT AATGTATCCA TACTGCCCTC CTCATATCAC
AAAACCCAAG GAGTGCAAAA AACTTTTCCT TGTTCACTTA TCTGAAAGGG AATACTTTGC AGTGCCCAAA AATTTAAAAC
TACTTGCTGT GCCATTGTTT GAACTCTATG ACAATGTTCA GAGATACGGT CCAGTTATAT CCACCATTCC TCAGCAGCTA
TCCAGATTCC AGTTTAAAAT GATCACTAAT TGAACGTAAA TTTGAAGCTC ACATGCTGAT AAATTACTAC TGTCTTTTTT
ATTTTGGTAA CCAGGACTGC CATTATCATT GTTGCGTAGA GAGAACTGAG TTTTGAAGTG AGTTTCTGAG TAGAATAGTT
ATTTAGTGAC ATGCTTTGTC TGTATTTATT CCTTGCACTA TGGGTAGACC TCGATTATCA ACCATCAACC GAAAAGATGC
AATCAAGTAT TCAACTTGTA GGTTTATGCC TAATACCCCA GTAGAAATCA AGGTGATAAA GAAGTGCCTT CTGTTCATGT
CTGTTGCTTC TGCCCTCCTC AGGTTGCCAA TATTGGTGTG GAAAGGGGCA TTGGTTTTCG TTGCCAGTTT TTCTGGTGAA
AGGCATTGAA TGGCAAAAAG TATGCATTTG AAATTCAAAT ATAATCCTCG TGGGAAAATT TATACAACAA TGACTAAAAT
TTAAATCCCT CTTTGACTTA TTATAGACAG TTTTAGCATA TCCTATTTCC GAAGTTGCTG CTTGTGCACG CTTGGTGAAG
TAGCACTTGA TTCAAATATT GATAGTTCAT TTTCTTCTTT ATAGTTTCCT TCACCTATTA AAGTCCAAGG GCCTGGTGTG
ATTTCTTTTA TTGATAATAA CGAGTAAACG TCAATAAGAC CGAAAATAGA AAATAGTATT AGAGGTGGAA GGAAGCATTC
CCAATGACAA TGTACATAAT AGTAGTGCTG TATTTTGGGA AAAAGTTGTA ATTATTTTTA TATATATGGC CATGGATTGG
AT

>Vigan.05G086000.01
ATGGTGTCGT CGCAAGTTGT GAATACATAC CCGTTGTCGA GCTACACGTT TGGCACAAAG GAGCCCAAGA TGGAGAAGGA
CACCTCCGTC GCCGATCGTC TCGCTCGCAT GAAAGTCAAC TATATGAAGG AGGGAATGAG GACCAGTGTG GAAGGGATTT
TACTGGTTCA AGAACATAAT CATCCACATA TACTTCTTCT GCAAATTGGA AACACATTTT GCAAACTCCC GGGTGGTCGT
CTCAAACCAG GAGAGAATGA AATTGAGGGC TTGAAGAGAA AGTTGACTAG CAAGCTTGGT GCTAATTCAC CAGCTCTTGT
GCCTGACTGG CAGATAGGTG AGTGTGTTGC AATCTGGTGG AGGCCAAATT TTGAAACCAT AATGTATCCA TACTGCCCTC
CTCATATCAC AAAACCCAAG GAGTGCAAAA AACTTTTCCT TGTTCACTTA TCTGAAAGGG AATACTTTGC AGTGCCCAAA
AATTTAAAAC TACTTGCTGT GCCATTGTTT GAACTCTATG ACAATGTTCA GAGATACGGT CCAGTTATAT CCACCATTCC
TCAGCAGCTA TCCAGATTCC AGTTTAAAAT GATCACTAAT TGA

>Vigan.05G086000.01
MVSSQVVNTY PLSSYTFGTK EPKMEKDTSV ADRLARMKVN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR
LKPGENEIEG LKRKLTSKLG ANSPALVPDW QIGECVAIWW RPNFETIMYP YCPPHITKPK ECKKLFLVHL SEREYFAVPK
NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFQFKMITN *