GBrowse Details

Vigan.05G080100.01

Basic Information:
Name: Vigan.05G080100.01
Multiple alignment
Variant Information
Position: Chr05:6075422..6077769 (+ strand)
Length: 2348
Functional Information:
Description: Similar to Peroxiredoxin. [T2DNE0, Phaseolus vulgaris]
GO: Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Thioredoxin-like fold (IPR012336)
Redoxin (IPR013740)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:54.80,50.87,55.01,75.36,61.88,149.64,26.95,32.70
Arabidopsis thaliana homolog: AT3G06050.1
Automatic updates:
Name: NM_001249816 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500096 (LOC100500096), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250092 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative peroxiredoxin IIF (LOC100500627), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6075422..6075439 (+ strand)
Length: 18
Type: five_prime_UTR
Position: Chr05:6075440..6075643 (+ strand)
Length: 204
Type: CDS
Position: Chr05:6075747..6075776 (+ strand)
Length: 30
Type: CDS
Position: Chr05:6075976..6076134 (+ strand)
Length: 159
Type: CDS
Position: Chr05:6076830..6076924 (+ strand)
Length: 95
Type: CDS
Position: Chr05:6077333..6077438 (+ strand)
Length: 106
Type: CDS
Position: Chr05:6077439..6077769 (+ strand)
Length: 331
Type: three_prime_UTR

>Vigan.05G080100.01 class=Sequence position=Chr05:6075422..6077769 (+ strand)
GCCTGTGAGA ATTTTGTGAT GGCTTCCGCT ATGGTGAATC GAGGTGGTTG TCGGATCATG AAATCAGTGT CTGCAGTTCT
TGGTACGAGG TTTTACGCCA AGATTGCAAC TGGGACTGAC ATAGTCTCTG CCGCACCCAA TGTTTCTCTC CAGAAAGCTC
GTACCTGGGA CGAGGGACTT GATTCGAAAT TCTCCACCAC TCCTCTCAAA GACATCTTCA AGGTCCCTAC TCTTTCTTTT
GTTTTTCTTA TGCCATTCCA TTTTTCCAAC CCCCTTTTTC ACTATATTGC TAATGTCTTT TTTTTTTCTT CCTTTTAATA
TCCAGGACAA GAAAGTTGTC ATCTTTGGGC TCCCAGTAAG TTAACATGCA ATTTTTCTGA CTAATTCATG TGTCTCTGGA
TGCCACTTTG GTGTTTGGTT GTTTTGTTTT TGCAAGATTT GGTACTGTTT TATGTGATGA ATGACTGCTT CCTTTGTTTC
TTGGAAATGG AACTGTTTGA AAGAAATGTG ACTATTTTTA AGAGTGATAA TTTTTATGCT TTGGTTATCT TCAGGGTGCA
TACACAGGTG TTTGTTCAAA CAAACATGTT CCTCCTTACA AAGAGAATAT TGACAAGTTT AAGGCCAAAG GGATAGATTC
TGTTATTTGT GTGGCTATTA ATGATCCGTA TACGATGAAT GCGTGGGCTG AGAAGCTTCA AGCCAAAGAG GCTGTAAGTT
ATCCCTGTCT AATTGCTTAG CCTCACTATT AAAGAAAAAG TTTTGTATGG TCTGAGGTTA TAATTTTCTC ATTTGCATTT
CCCTGGTAAA ACACTTGGTA TCTCTGCCTA ACTTTTGTTG CTAAATCTTG TGTGACAATT GAAGGATCCG TAGATATGTT
TGTAATTAAG CGAGAACTAG TGACGAGTCG AAGATAATGC ATCAGCTGTG CAGTGATTTG GTTAAATGAA ATATGTGAAA
GTTGTAGTAA ATGTAGTTGT GGGAAAAGAA TAAAGGGTTT TATGAGAAGA GAGCTCCTAT ATCTAAATTG GTACATCCAT
GTTAAGATTG AGCTCTTCAG TAAACATAAT CTGTTCAGTA AATATGGAAA TTTCTACGTT GACTATCATG CATCCATTGA
CCTAGATGAA TTATAATTTT CTTCTATTTG GTGTGTTTTG GTTTTCCAAT TTTCTTTATT TTGGGAAGAG ATTGTTGAGA
ACACACTCAC TCTTATGGGT TAAAATTTAT TACACATCAG GAGAGAGAGG TGTCAATTAA ATTGTGAGAC TCATCAAATT
GTGATTTTTA ATAAATTTCA ACTAATTATA GAGAATGTGT TTAAAAGAGG GTGTGTTCCT GACATTTCCC TTTTGGAAAT
GGGTTATGTG CATTGTCTTT TCTTATGTTA TGTAAAATTT ATCTCCAGAT TGAGTTTTAC GGGGACTTTG ACGGGAGCTT
TCACAAGAGT TTGGAGTTGG TTACTGATCT CTCAGGTGCA TTACTTGGAA CACGATCTGA AAGGTGTGTT ATATACCATC
CTTGAACGTG CACTTGTTCA CTTGAACAAC TGTGGACACA AAGTACTGAT GAAACTACCA AGTAATGACA AACATAACAA
TGTAAATATA TTAACTATGT CAAACCCTTT TCATAATCCT ACATGTACCA TTTTAAAGAG GAAACATTAT AAATGCACTT
TATCTGTTGG AATTTTCAAA ATAATAGTAA AAGAAATTCT GACTCACGTG GATGTGCTAT CACTTACTGT TTATTGGCCA
AATATGGGGT TTGGGGGTAA CCATACCCGA AGCCAGACCA ATTGGTTGGA TAGGTAGTCC TTAGATCAAT GCTTTCTACG
CAAGACATGT CTGTTCCTTT TTGAGTTAAA GATTAGATTT CAATTCTAAA TGAGTAGTTG TTTCCTTGTA GATGGTCAGC
ATATGTGGTA GATGGAAAGG TTAAGGCTCT TAATGTTGAA GAAGCTCCAT CTGATGTTAA GGTTTCTGGT GCAGACACCA
TTTTGGGACA GATTTAAAGT TCCTGTTGGT TTGTTTACAT GTAGTAAGTC TTCAATAAAA TGTACCTAAT ACTTCCTGCT
GATACAAGGT TGTCAGTTTG GACCCTTCTT CCCTGCATGC ATGGTTATTA AGTTGAGTAA GTTTTTAGCA TGCATCACAT
ATTAGCTGTA ACTTTGGTAT TTTATCAATT CTATATTTAT TTATAGTCTC AATTGTTTTT CTGTTGAAGT CTCCCTTGTG
TTTAGTAACA TCTTCATTGC AACTTGAGTT CCTAAGTTAT TTTAGTGAGT CCTATTTTAT TTCTCAATTC ACAAAATCTT
TATTTTGATT TGGAAAACTG AAACTGTA

>Vigan.05G080100.01
GCCTGTGAGA ATTTTGTGAT GGCTTCCGCT ATGGTGAATC GAGGTGGTTG TCGGATCATG AAATCAGTGT CTGCAGTTCT
TGGTACGAGG TTTTACGCCA AGATTGCAAC TGGGACTGAC ATAGTCTCTG CCGCACCCAA TGTTTCTCTC CAGAAAGCTC
GTACCTGGGA CGAGGGACTT GATTCGAAAT TCTCCACCAC TCCTCTCAAA GACATCTTCA AGGACAAGAA AGTTGTCATC
TTTGGGCTCC CAGGTGCATA CACAGGTGTT TGTTCAAACA AACATGTTCC TCCTTACAAA GAGAATATTG ACAAGTTTAA
GGCCAAAGGG ATAGATTCTG TTATTTGTGT GGCTATTAAT GATCCGTATA CGATGAATGC GTGGGCTGAG AAGCTTCAAG
CCAAAGAGGC TATTGAGTTT TACGGGGACT TTGACGGGAG CTTTCACAAG AGTTTGGAGT TGGTTACTGA TCTCTCAGGT
GCATTACTTG GAACACGATC TGAAAGATGG TCAGCATATG TGGTAGATGG AAAGGTTAAG GCTCTTAATG TTGAAGAAGC
TCCATCTGAT GTTAAGGTTT CTGGTGCAGA CACCATTTTG GGACAGATTT AAAGTTCCTG TTGGTTTGTT TACATGTAGT
AAGTCTTCAA TAAAATGTAC CTAATACTTC CTGCTGATAC AAGGTTGTCA GTTTGGACCC TTCTTCCCTG CATGCATGGT
TATTAAGTTG AGTAAGTTTT TAGCATGCAT CACATATTAG CTGTAACTTT GGTATTTTAT CAATTCTATA TTTATTTATA
GTCTCAATTG TTTTTCTGTT GAAGTCTCCC TTGTGTTTAG TAACATCTTC ATTGCAACTT GAGTTCCTAA GTTATTTTAG
TGAGTCCTAT TTTATTTCTC AATTCACAAA ATCTTTATTT TGATTTGGAA AACTGAAACT GTA

>Vigan.05G080100.01
ATGGCTTCCG CTATGGTGAA TCGAGGTGGT TGTCGGATCA TGAAATCAGT GTCTGCAGTT CTTGGTACGA GGTTTTACGC
CAAGATTGCA ACTGGGACTG ACATAGTCTC TGCCGCACCC AATGTTTCTC TCCAGAAAGC TCGTACCTGG GACGAGGGAC
TTGATTCGAA ATTCTCCACC ACTCCTCTCA AAGACATCTT CAAGGACAAG AAAGTTGTCA TCTTTGGGCT CCCAGGTGCA
TACACAGGTG TTTGTTCAAA CAAACATGTT CCTCCTTACA AAGAGAATAT TGACAAGTTT AAGGCCAAAG GGATAGATTC
TGTTATTTGT GTGGCTATTA ATGATCCGTA TACGATGAAT GCGTGGGCTG AGAAGCTTCA AGCCAAAGAG GCTATTGAGT
TTTACGGGGA CTTTGACGGG AGCTTTCACA AGAGTTTGGA GTTGGTTACT GATCTCTCAG GTGCATTACT TGGAACACGA
TCTGAAAGAT GGTCAGCATA TGTGGTAGAT GGAAAGGTTA AGGCTCTTAA TGTTGAAGAA GCTCCATCTG ATGTTAAGGT
TTCTGGTGCA GACACCATTT TGGGACAGAT TTAA

>Vigan.05G080100.01
MASAMVNRGG CRIMKSVSAV LGTRFYAKIA TGTDIVSAAP NVSLQKARTW DEGLDSKFST TPLKDIFKDK KVVIFGLPGA
YTGVCSNKHV PPYKENIDKF KAKGIDSVIC VAINDPYTMN AWAEKLQAKE AIEFYGDFDG SFHKSLELVT DLSGALLGTR
SERWSAYVVD GKVKALNVEE APSDVKVSGA DTILGQI*