GBrowse Details

Vigan.05G079300.01

Basic Information:
Name: Vigan.05G079300.01
Multiple alignment
Variant Information
Position: Chr05:6008062..6013406 (+ strand)
Length: 5345
Functional Information:
Description: Similar to ARG10. [O64438, Vigna radiata]
InterPro: Domain of unknown function DUF3700 (IPR024286)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:750.78,47.68,113.11,228.57,553.91,414.48,75.87,84.93
Arabidopsis thaliana homolog: AT5G19140.1
Automatic updates:
Name: NM_001255022 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stem-specific protein TSJT1-like (LOC100806163), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255936 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stem-specific protein TSJT1-like (LOC100789239), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317286 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata stem-specific protein TSJT1-like (LOC106775911), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6008062..6008216 (+ strand)
Length: 155
Type: five_prime_UTR
Position: Chr05:6008217..6008419 (+ strand)
Length: 203
Type: CDS
Position: Chr05:6011848..6012088 (+ strand)
Length: 241
Type: CDS
Position: Chr05:6012169..6012289 (+ strand)
Length: 121
Type: CDS
Position: Chr05:6012432..6012541 (+ strand)
Length: 110
Type: CDS
Position: Chr05:6013124..6013162 (+ strand)
Length: 39
Type: CDS
Position: Chr05:6013163..6013406 (+ strand)
Length: 244
Type: three_prime_UTR

>Vigan.05G079300.01 class=Sequence position=Chr05:6008062..6013406 (+ strand)
TTTTTAATTT ATGTATGAAA TAACCGTGCT ACCCTCGTTC CTTCCCTTTA TAACGAAACC CACACTCTAC ACGCACTTCC
TATCCATTCT CACTTCCGTG TACTTTTGCG ATATATTTTT TTTATTTTTC TTTCTTTCAT TTTAGAGAGA GAAAAATGTT
GGCAATCTTG AGCAGCTCTG TGGTGTCGCC TCCCGAGGAG TTGGTAGCCG CAGGCAGTCG AACACCGTCA CCAAAGACAT
CAGCAGCGAA ACTGCTGACA CGTTTTGTGG AAAGCAAAGC ATCGGCGGTG TCGCTGCAGG TGGGGGAACA TGTGCAGTTG
GCTTACACAC ACCACAGCGA ATCACCCTGG CATCCTAGGT ATTTTTAAAT GTTTTGAAAT TTCATAAATT TCACCTAACA
CACTTACTTG TTATCGTGTT GATTCTCACC AAACATAAAA GGAAGAGTGT TTACGAAGTA TAATTAAGAA ATTGGAATTA
ATCAATTGCT TGATTCTAAA AATTTCAGAC ACAAAATGGA AGAATCGTGT TGGATCGGTT ATTGTTAATG TAAATCATGC
GAGAGCATGA TTGGTGGAAA ACATTTGCTG CTGATTGATT GATGCGTGGA TCATATGGAT AACGGACTAC TTAATTATAT
TGCATATTTT AGGAACTTCA TGAGCAATGT TTATAGTATT ATTTGAAAGT AAAACTTGTT ATATTTTCAG TTTTGATAAA
TATTTTTAAT TATTTTATAA TAAAATGATG AACTAAGACT AAAAAATTAT ACAAGACAAG TTTTTAGAAT AAAAAACAGG
TAGATGATTA GACCCAAGAA TATTATGAAA ATAATTTAGA AAATGCATAA TTTTGCATAA TGGTAACTGT TGGGAGTGGG
TGGGTGAATG ATCTAATTTC TACAGTAATA ATAATTTCAG CGTCACACAG CCAAAGAGGA AAGTGAAGAA AATTAAATTA
TTAATCATAC TGAGAAAAGT GGGAGATTCT GATGTGAGAA GAGGAAGAGA AGATGTGATC CACAGTTTTG AGAATTCACC
CATAATTCTG AGTTGTATTG TTGTCACATT CTGTCCTGAT CAAGGAAAAC CAATACAAGT TATTTATTGT TGAAAGAAAC
ATAAACCTTA AATAAAACAT AAAAACCAAT TTGCTTTTTT TTTTTTATTC AAGGTTTTTA AAACGAAACA GCTATTTGAA
GTGATCATGA TTTAATTTCA ATTTTAAAAT CTTAACATAA ATGATTTGAT GTCAAACTAA TATCAATAAA ATAATAGCTA
AATACTCTGT AAACATTTTT TTTCATTGAA TATCAATAAA AAGTTAAAAA TGAGTTTTTT TGTTATAAGT TTTAATGTTT
AAAATATATA TGAAAATAAA AATATCTTAA TATTTAAATT TTGATAGTAT AAAATGATAT TAATCATAGA ATTTATCTTA
AAATAAATTT TTTTGTTACT TTTTATTTAA AAGAAACCAA ATTATTGTAA AAAAAAGTTG TTTCATTGAA CAACCTGTCA
TGAAATAATG TTCTACAGAG TTATATTTTG ATGAATTTTC AAGTCTTTAA ATGATTTTTC TCATACTGAT TTGTGGGTTG
AGGAGTATGA TTGGTCATTC TGACCCAGAT TTCAAAATAT ACTGCAATAT CATACATCAT AATATGGATT CTGTCACAGT
TGTTTTTTCC ATTACAATCA AATAGTATAT AACAAAACTG TTCAGATTAC AAATATAAGT TTTTTTTGAG ATGGATTCAT
CTTTGTGCTA AAAGAGATTA TCCGGTATAA AACTCATCAT TCATTTAATT TAAATACACA AAAATCCTTT TAATTTAAAT
AGACAAAAAT CCTTTGACGT AATTGGTGGA TAAATTCTTA TTTGACTTTC CATGATAATT ACTATTAGCG AAAATATGCA
TGTGTTCAAT TTTTTATAAT AAAAATAATA AAATTATTAT TATAAAAGTA AAATATAAAT ATAAATACAA ATAATTTTTA
TAATTTTATT ATTGATTTTA TAAATAATTT TTCTATCATA GATAGTTATT TTAATTTTTA AAAATAGTTA AATTTAAAAG
AAAAAACACG TTAAATAAAA AAATTAAAGG ATAAAATTAG TAAAGTAATT ATTTTAATTA AAATTTATTA TTTAAAATAT
AAAGTAAGAG AATTATGTTT AATTTTATGA TCACAGAATA AACTTTAATG CTTATATTAC TTTTTGAATT TTTGATTTAT
CAAAAACATA AATTTACGCT GAATTTTGGT GTTATCAAAA ACATAAATTT AAGATATTAA ATAATTTTGA ATGTCCATGA
TTTTTAACTT ATATAATTGG ATGAATGAAA TATTCAATAT TCTTACGAGT TTCCTTTCAC ATGAGATCCT AGAGTGAGAT
GAATCCATTT CCATGGTCTG TGGTTTATAA GAGTGGGGTT GATCTTTGTT GAGAAAGTGT TATTAGGAAA TTTTTTATCA
AGTTAGTGTA AGTCAAAAAC TGAAATTAGC TTATAGTATC AGTTAATATT AATATTAATT TTATATTTAG TTAATATTGA
CTTTAACATT ATATTTACCG AACATACATG TTATAAGGTT CTATTAACGG CTATAAATGA AATAACAGTT ATTAATTGAA
TATTTTTAAT ATATGTTGGT GAAATAAATT AGGTAGTGTT TACATTAATG TATATTTTTT TAATAAAATT AAAATAATTT
TTTTGTGCAT GTTTAATTAT GTTCCATTTT TATTTTAATA TTTATTAAAT ATAAAAATTC TATATATTAT AGTTGGTGTT
GTTTCAGTCT TCCTACCAAC TACTCTCTTA ATTATTTATT CATCATGCTT AAATTCAACT AAATTAAAAT GGTAATACAG
TCTAAATTGA ATAATTTAGA ACATCATGGT AATTATTGTT TATGTTTTAA TTTGTTTTCT TTGAGAAATA GATGAAAAAT
TCGGTGCCAG TTCTGGTGGG TTCTATTTGA ATTATTAGTC TATACATTGC GTGTGATTTT TTCCACTCAA AATGCTGATT
TTTACTGGCT GGACTGTTGC TTTCGTTCCA TTATTTTGCT TTTTTGTCCA AATAGGACGA ATGAGATAAA TAGATAAGGA
TAAGATAGAT TAGGTTGGTG GTCCAGGCAA AAGATTCAAA ACACTTTGAT GAAGCTATTT ATATTCTTGT CATGGAGTTT
TCTTTTTCAT TCATTTGTCA AGAAGTTTTC TTAATCAAAA GTCAGATGGA TAGCTTTTAT TTAAAATATG CTTTTGAATT
TTTATTTATG TTTAAAATAT ACATAAACAT ATCTGTAGTG GAAGTGCCGT ATCAAGATAG GTATAGGTTG GATGTCTTAT
TCCTTTCTTT CTTTTGTGTG AAGGTAATCT TCACCCACTC CTTTTCATAT TAAAAAAAAA AACAAAAAAA TAGGTCCCTC
ATTTATTGAG GTATAAACTA ATTAAGTCAA TTGAGTATTT TGAAATTTAA GCTTTGCTTG TGGGAAGAAA AGTTTCACAT
AGATGATGCT TGATAGGAGT AGTGATGCAA AAAACTTGTA AATTGAAAAT TACAAGGGCA ATGCACATTT TACCTTTGTA
TTTGAGCTTT GAGCAGCACA TCCTTATTAT CCTATATAGA CATTGAAAGC AGCACGCCAC TTGTACTTAG ATTGTGCACT
TTGTGTTCAG TTAGATTGCA CTGTTTCACT GTTTCTCATT GAACTTTTTA ATCTATTTCT TTATCTGTAT CAGTGTTGGG
TCTAAATGTT AACTGTAAAA TGTCAGATCA TTTGCTGTTA AGGATGAAAT ATTCTGCTTG TTTGAGGGAG CTCTTGACAA
TTTGGGCAGT CTGAGACAAC AGTATGGACT GGCCAAATCA GCCAGTGAAG TGATTTTGGT GATTGAGGCT TACAAAGCTT
TGCGTGATCG AGCACCCTAC CCTGCCAATC GTGTTGTTTG CCACCTCAGT GGGAGCTTTG CTTTTATAGT TTTTGACAAG
TCCACTTCTA CAGTCTTTGT GGCTTCTGTA AGTTATCTAG CCATCCCATC AATTTGTCAC GATCTTCAGT CTTTTCTACT
CAACCTTGGC TTGTTTTGTT TTTACAGGAT CAAGCTGGTA AAGTTCCTCT CTTTTGGGGA ATTACAGCTG ATGGATACGT
AGCTTTTGCT GATGATGCAG ACTTGCTTAA AGGTTCTTGT GGCAAGTCGC TTGCTTCTTT CCCTCAAGGT GTGTTTAATT
TTATTAGAAA ACATCACAAT TCTTAACATT TCGGCAACTA CTTATTACAT CGACATTGTC AACATTCTAT TTTAGATTTA
CTCCCAAAAG TATATGTATC CTCTCATTAA TTATTGTCTG AATTGTACAG GATGCTTTTA CTCTACAGCA GTTGGAGGAT
TGAGATGCTA TGAGAATCCA AAGAACAAGA TTACTGCAGT ACCTGCCGAA GAAGAAGAAA TCTGGGGTGC GACTTTTAAG
GTAAATAGAT GACAAGAATT TAAGTATTAT TGCTGGTAAA ACTCTCAGTT CTCTCTACAA AATATTCTTT TCCTCTATTT
AGAATAGAAA ATCAGTCCAA ATAGTAATTG GAGATTATTA ACACCAGAAC ATGAGTTCAT AAAAACACCA TGAATACAGC
AACATTACAC TAAATAAAAA AGGATAGGTT TCCAAAAAGA ATGGATTAGA CTAACTTAAA CTCGATCTCC ACATCTGTTT
CTAGAGTTTA AAAAGGTTAG AGTAGAAATT AATTATGCAA ATAGAATTGC AAGTAGCAAT TAAATTTTAA TATAGTGATA
GTTCTCCTTG AAACATCCGC AACAGCAAAA TTAGAATGTA TATTTGATTT GGTTCTCAAG TGGTTGGCAG GTCTGGTTTA
GGTACGACGT CTTTGGCTGG CTGGGTTAAC AAGAAAGAAA TTGGAAACTC CACCACACAA AAATATTATA TATTTATTTA
TTTAATTCCT TACAGCTTGA CTTCCAAAAT TTATTTTTGC ATTCATGGTT TATGTCTTGA CTCTGTTGCT CCCTCCATAA
ATGAACTTGG ATGAATGATC AGGTGGAGGG ATCAACAGTT CTTGCAGCCA CAGAGTACTA GATCCATCTT GGAGTACAGT
ATGGTGTGAT GTGTTAATGG AGTGATGACT GTAAGGCATG CACAAGGGAC CATGTAAATA CCTTTTGGTA ACTATGAGAA
AAGTGCTACT GGTAGTAGTT GTTTGTTCAT TAGATAGGAT TTACTATGTT TCTGGTGTAC AGTTGCGCTT TCTGATGTAA
TAAAAATGTG CCTGAGTTTC TCTCATACTC ATTCTATATC AAGTGTGTCC GCAAAAGATG ATTCA

>Vigan.05G079300.01
TTTTTAATTT ATGTATGAAA TAACCGTGCT ACCCTCGTTC CTTCCCTTTA TAACGAAACC CACACTCTAC ACGCACTTCC
TATCCATTCT CACTTCCGTG TACTTTTGCG ATATATTTTT TTTATTTTTC TTTCTTTCAT TTTAGAGAGA GAAAAATGTT
GGCAATCTTG AGCAGCTCTG TGGTGTCGCC TCCCGAGGAG TTGGTAGCCG CAGGCAGTCG AACACCGTCA CCAAAGACAT
CAGCAGCGAA ACTGCTGACA CGTTTTGTGG AAAGCAAAGC ATCGGCGGTG TCGCTGCAGG TGGGGGAACA TGTGCAGTTG
GCTTACACAC ACCACAGCGA ATCACCCTGG CATCCTAGAT CATTTGCTGT TAAGGATGAA ATATTCTGCT TGTTTGAGGG
AGCTCTTGAC AATTTGGGCA GTCTGAGACA ACAGTATGGA CTGGCCAAAT CAGCCAGTGA AGTGATTTTG GTGATTGAGG
CTTACAAAGC TTTGCGTGAT CGAGCACCCT ACCCTGCCAA TCGTGTTGTT TGCCACCTCA GTGGGAGCTT TGCTTTTATA
GTTTTTGACA AGTCCACTTC TACAGTCTTT GTGGCTTCTG ATCAAGCTGG TAAAGTTCCT CTCTTTTGGG GAATTACAGC
TGATGGATAC GTAGCTTTTG CTGATGATGC AGACTTGCTT AAAGGTTCTT GTGGCAAGTC GCTTGCTTCT TTCCCTCAAG
GATGCTTTTA CTCTACAGCA GTTGGAGGAT TGAGATGCTA TGAGAATCCA AAGAACAAGA TTACTGCAGT ACCTGCCGAA
GAAGAAGAAA TCTGGGGTGC GACTTTTAAG GTGGAGGGAT CAACAGTTCT TGCAGCCACA GAGTACTAGA TCCATCTTGG
AGTACAGTAT GGTGTGATGT GTTAATGGAG TGATGACTGT AAGGCATGCA CAAGGGACCA TGTAAATACC TTTTGGTAAC
TATGAGAAAA GTGCTACTGG TAGTAGTTGT TTGTTCATTA GATAGGATTT ACTATGTTTC TGGTGTACAG TTGCGCTTTC
TGATGTAATA AAAATGTGCC TGAGTTTCTC TCATACTCAT TCTATATCAA GTGTGTCCGC AAAAGATGAT TCA

>Vigan.05G079300.01
ATGTTGGCAA TCTTGAGCAG CTCTGTGGTG TCGCCTCCCG AGGAGTTGGT AGCCGCAGGC AGTCGAACAC CGTCACCAAA
GACATCAGCA GCGAAACTGC TGACACGTTT TGTGGAAAGC AAAGCATCGG CGGTGTCGCT GCAGGTGGGG GAACATGTGC
AGTTGGCTTA CACACACCAC AGCGAATCAC CCTGGCATCC TAGATCATTT GCTGTTAAGG ATGAAATATT CTGCTTGTTT
GAGGGAGCTC TTGACAATTT GGGCAGTCTG AGACAACAGT ATGGACTGGC CAAATCAGCC AGTGAAGTGA TTTTGGTGAT
TGAGGCTTAC AAAGCTTTGC GTGATCGAGC ACCCTACCCT GCCAATCGTG TTGTTTGCCA CCTCAGTGGG AGCTTTGCTT
TTATAGTTTT TGACAAGTCC ACTTCTACAG TCTTTGTGGC TTCTGATCAA GCTGGTAAAG TTCCTCTCTT TTGGGGAATT
ACAGCTGATG GATACGTAGC TTTTGCTGAT GATGCAGACT TGCTTAAAGG TTCTTGTGGC AAGTCGCTTG CTTCTTTCCC
TCAAGGATGC TTTTACTCTA CAGCAGTTGG AGGATTGAGA TGCTATGAGA ATCCAAAGAA CAAGATTACT GCAGTACCTG
CCGAAGAAGA AGAAATCTGG GGTGCGACTT TTAAGGTGGA GGGATCAACA GTTCTTGCAG CCACAGAGTA CTAG

>Vigan.05G079300.01
MLAILSSSVV SPPEELVAAG SRTPSPKTSA AKLLTRFVES KASAVSLQVG EHVQLAYTHH SESPWHPRSF AVKDEIFCLF
EGALDNLGSL RQQYGLAKSA SEVILVIEAY KALRDRAPYP ANRVVCHLSG SFAFIVFDKS TSTVFVASDQ AGKVPLFWGI
TADGYVAFAD DADLLKGSCG KSLASFPQGC FYSTAVGGLR CYENPKNKIT AVPAEEEEIW GATFKVEGST VLAATEY*