GBrowse Details

Vigan.05G062500.01

Basic Information:
Name: Vigan.05G062500.01
Multiple alignment
Variant Information
Position: Chr05:4503930..4506191 (- strand)
Length: 2262
Functional Information:
Description: Similar to Uncharacterized protein. [I1MEZ2, Glycine max]
GO: Biological Process: translational initiation (GO:0006413)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: translation initiation factor activity (GO:0003743)
InterPro: Translation Initiation factor eIF- 4e (IPR001040)
Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (IPR019770)
Translation Initiation factor eIF- 4e-like domain (IPR023398)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:168.05,128.87,66.78,50.40,114.98,76.64,41.20,44.54
Arabidopsis thaliana homolog: AT4G18040.1
Automatic updates:
Name: NM_001250599 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 4E (LOC100499636), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:4503930..4504268 (- strand)
Length: 339
Type: three_prime_UTR
Position: Chr05:4504269..4504319 (- strand)
Length: 51
Type: CDS
Position: Chr05:4504414..4504479 (- strand)
Length: 66
Type: CDS
Position: Chr05:4504874..4504999 (- strand)
Length: 126
Type: CDS
Position: Chr05:4505537..4505702 (- strand)
Length: 166
Type: CDS
Position: Chr05:4505813..4506096 (- strand)
Length: 284
Type: CDS
Position: Chr05:4506097..4506191 (- strand)
Length: 95
Type: five_prime_UTR

>Vigan.05G062500.01 class=Sequence position=Chr05:4503930..4506191 (- strand)
TAATCAGTGA CTCGAAACCG AATACACGCA TCTATTTGCA TCTCTTAGCA CAAAGAACAC AGAAGGAAAG AAAGGGAAAA
AGTGTGAACT TAAAAATGGT TGTGGAAGAT TCACAAAAAT CAACTATCAC CGATGACCAA AACCCTAGCA GGGTCGACAA
CGACGACGAC GATCTCGAAG ATGGGGAGAT CCTCGAAGAT GCCGACGACG CCGCCTCGGC TGCCTCCAAG CCTCCGTCCG
CACTCCTCCG CAACCCCCAC CCTCTCGAGA ATTCCTGGAC CTTCTGGTTC GACAGCCCTT CCGCCAAGTC CAAACAAGCC
GCATGGGGCA GTTCCATCCG ACCCATATAC ACCTTCGCCA CCGTCGAAGA GTTTTGGAGG TCAAGCTTTG ATCTTTTCCC
TTCCCCTCCC TCTGGGTCTT AACCTAATTG TTTCTTTCTT GATTCTTGCA AAAGCTAACC CTTGTTTTTT TTACATGAAA
ATTGTTCAGC ATTTACAATA ACATTCACCA CCCGAGCAAG TTGGGTGTGG GGGCGGACTT TCACTGCTTC AAGTATAAGA
TTGAGCCCAA ATGGGAGGAC CCTATCTGCG CCAATGGTGG AAAATGGACC ATGACTTTCC AAAGGAACAA ATCTGATACC
AGTTGGTTGT ATACGGTATT GTTTTACATT AGCCTCTGTT TTTTATAACA AAATGCTCAT TTGTTTGTGG AGTATAACTT
GTGAATTTAA TTAGCATGTG TTACTGTTGT AACGAATCGT CATGTACGGC TAGTTATTTT TTGGAATAGC TAGTCTAAAA
CTCGTAATTG AAATTATTTT CTTATTGTTT GATACCGGAG AATGTTTTGT AGGGATAGGG CTTGGATTTT ATATTCTATT
AGTGAATTGG ATGATACACA GGAAATGAAC CAATCTTAAC GGATGTTTGA TACGGCTAGT TATTTTTTGT AATAGCTAGT
CTAAAACTCG TAATTGAAAT TATTTTCTTA TTTTTTGATA CCGGAGAATG TTTTGTAGGG ATAGGGCTTG GATTTTATAT
TCTATTAGTG AATTGGATGA TACAGGAAAT GAACCAATCT TAACGGATGT TTGAGTGAAA AAAAATTGCA TCGAGTAGTG
TATGTAAAAT AAATTATTTA TTTGTGACCT AACTAATAGT GCTTTTGTTT TCTCTGTTCC TGCTGCCTCT AGTTGTTGGC
AATGATTGGA GAACAGTTTG ATCACGGAGA TGAAATTTGT GGAGCTGTCG TGAATGTCAG AAATAGGCAG GATAAAATTT
CTATTTGGAC TAAGAATGCT TCAAATGAAG CTGCTCAGGT GACTTTTTTT TACCTATTTA TTTTGCTTTG TTTGTCTTTC
CCTTTATTGT CTATGGTTCT GCAAGTTGGG AGGGAGATTT GGCTAATCTT AATTAAACTC TCATGTTATG TCAGAATTAT
TGAGGAATGT GTATTAGACA TACCTCATCT AATTTACTCT TGAATTCTCC AAGATGACTT TCTGTGATTA CACTGAATAA
CAGCAACGTT AGAAAACTAC ATGTTATATT TGTTCTCATT ACGAGCGAGT GTCTTTGGTG ACTGTCTAAA CCCTGCTTTA
CTTATGTTCG TTCTCATTAG GAGTGAGGAT CTTTAGTGAC TGTCTAAACC TTAAATCTTC TCTCGAATTG TTGTGGTAAC
TTGAGGAGTA TCAAACATTT TTCTTCTTGC AGATGAGCAT TGGAAAGCAG TGGAAGGAGT TTCTTGATTA CAATGAGACA
ATAGGCTTTA TATTTCATGT GAGTGGAAAG CTATCTATGT TTATCTAATT CCAAATTAGG TTAATCTTTT TCGTATTTTG
GGTTTTTATT TGTGTTGCCC TGTGATCTCC AGGAGGATGC AATGAAGCAT GAGAGGAGTG CTAAAAATAA ATATGTGATA
TGAAGTGTAT AGCGTATTAA AAGGTGGGTG GCAAATGAAG GATGCGGTAC ATTTCTTGCA TGAAGAGTTG GCATTTAGAT
GCTCAGTCTT TCCTCCTGCC TGTAGCTGAG CTGAATTCTA AGCCCTTTTG GTCGGTCTCT TATATCTTTG TAGTACTTTC
CTATTTGTTG TGCTCGGAGA ATATTTCCTA CTGAAGATGT TTCATCATCA ATAATATAGT GATTAGGGTA TAAATGTACT
ACCATTAGTT AGAAAATGGA ACCAAACTTG CATCCTTGGA TTGATATGAA GATTCTCCTT CAAATACCGG AAAGTGCATA
TTGTGTTGAT GGAAAACTTA AC

>Vigan.05G062500.01
TAATCAGTGA CTCGAAACCG AATACACGCA TCTATTTGCA TCTCTTAGCA CAAAGAACAC AGAAGGAAAG AAAGGGAAAA
AGTGTGAACT TAAAAATGGT TGTGGAAGAT TCACAAAAAT CAACTATCAC CGATGACCAA AACCCTAGCA GGGTCGACAA
CGACGACGAC GATCTCGAAG ATGGGGAGAT CCTCGAAGAT GCCGACGACG CCGCCTCGGC TGCCTCCAAG CCTCCGTCCG
CACTCCTCCG CAACCCCCAC CCTCTCGAGA ATTCCTGGAC CTTCTGGTTC GACAGCCCTT CCGCCAAGTC CAAACAAGCC
GCATGGGGCA GTTCCATCCG ACCCATATAC ACCTTCGCCA CCGTCGAAGA GTTTTGGAGC ATTTACAATA ACATTCACCA
CCCGAGCAAG TTGGGTGTGG GGGCGGACTT TCACTGCTTC AAGTATAAGA TTGAGCCCAA ATGGGAGGAC CCTATCTGCG
CCAATGGTGG AAAATGGACC ATGACTTTCC AAAGGAACAA ATCTGATACC AGTTGGTTGT ATACGTTGTT GGCAATGATT
GGAGAACAGT TTGATCACGG AGATGAAATT TGTGGAGCTG TCGTGAATGT CAGAAATAGG CAGGATAAAA TTTCTATTTG
GACTAAGAAT GCTTCAAATG AAGCTGCTCA GATGAGCATT GGAAAGCAGT GGAAGGAGTT TCTTGATTAC AATGAGACAA
TAGGCTTTAT ATTTCATGAG GATGCAATGA AGCATGAGAG GAGTGCTAAA AATAAATATG TGATATGAAG TGTATAGCGT
ATTAAAAGGT GGGTGGCAAA TGAAGGATGC GGTACATTTC TTGCATGAAG AGTTGGCATT TAGATGCTCA GTCTTTCCTC
CTGCCTGTAG CTGAGCTGAA TTCTAAGCCC TTTTGGTCGG TCTCTTATAT CTTTGTAGTA CTTTCCTATT TGTTGTGCTC
GGAGAATATT TCCTACTGAA GATGTTTCAT CATCAATAAT ATAGTGATTA GGGTATAAAT GTACTACCAT TAGTTAGAAA
ATGGAACCAA ACTTGCATCC TTGGATTGAT ATGAAGATTC TCCTTCAAAT ACCGGAAAGT GCATATTGTG TTGATGGAAA
ACTTAAC

>Vigan.05G062500.01
ATGGTTGTGG AAGATTCACA AAAATCAACT ATCACCGATG ACCAAAACCC TAGCAGGGTC GACAACGACG ACGACGATCT
CGAAGATGGG GAGATCCTCG AAGATGCCGA CGACGCCGCC TCGGCTGCCT CCAAGCCTCC GTCCGCACTC CTCCGCAACC
CCCACCCTCT CGAGAATTCC TGGACCTTCT GGTTCGACAG CCCTTCCGCC AAGTCCAAAC AAGCCGCATG GGGCAGTTCC
ATCCGACCCA TATACACCTT CGCCACCGTC GAAGAGTTTT GGAGCATTTA CAATAACATT CACCACCCGA GCAAGTTGGG
TGTGGGGGCG GACTTTCACT GCTTCAAGTA TAAGATTGAG CCCAAATGGG AGGACCCTAT CTGCGCCAAT GGTGGAAAAT
GGACCATGAC TTTCCAAAGG AACAAATCTG ATACCAGTTG GTTGTATACG TTGTTGGCAA TGATTGGAGA ACAGTTTGAT
CACGGAGATG AAATTTGTGG AGCTGTCGTG AATGTCAGAA ATAGGCAGGA TAAAATTTCT ATTTGGACTA AGAATGCTTC
AAATGAAGCT GCTCAGATGA GCATTGGAAA GCAGTGGAAG GAGTTTCTTG ATTACAATGA GACAATAGGC TTTATATTTC
ATGAGGATGC AATGAAGCAT GAGAGGAGTG CTAAAAATAA ATATGTGATA TGA

>Vigan.05G062500.01
MVVEDSQKST ITDDQNPSRV DNDDDDLEDG EILEDADDAA SAASKPPSAL LRNPHPLENS WTFWFDSPSA KSKQAAWGSS
IRPIYTFATV EEFWSIYNNI HHPSKLGVGA DFHCFKYKIE PKWEDPICAN GGKWTMTFQR NKSDTSWLYT LLAMIGEQFD
HGDEICGAVV NVRNRQDKIS IWTKNASNEA AQMSIGKQWK EFLDYNETIG FIFHEDAMKH ERSAKNKYVI *