GBrowse Details

Vigan.05G058100.01

Basic Information:
Name: Vigan.05G058100.01
Multiple alignment
Variant Information
Position: Chr05:4152884..4155018 (- strand)
Length: 2135
Functional Information:
Description: Similar to Uncharacterized protein. [C6SV59, Glycine max]
InterPro: Protein of unknown function DUF872, transmembrane (IPR008590)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:61.89,15.83,9.70,13.76,10.90,14.41,17.23,13.23
Arabidopsis thaliana homolog: AT3G29170.1
Automatic updates:
Name: NM_001248814 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305463 (LOC100305463), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:4152884..4153135 (- strand)
Length: 252
Type: three_prime_UTR
Position: Chr05:4153136..4153215 (- strand)
Length: 80
Type: CDS
Position: Chr05:4154068..4154332 (- strand)
Length: 265
Type: CDS
Position: Chr05:4154333..4155018 (- strand)
Length: 686
Type: five_prime_UTR

>Vigan.05G058100.01 class=Sequence position=Chr05:4152884..4155018 (- strand)
CTAAAGCCCA AAGATGACCC AACCCACTAA TTTGTATAGG TGGTGTCTGT GAAACGACGA GAGAAGAGAA AGGAAACACG
GCAGAGTAAT AAGATCGCTG GCTGTCCAGG AGAACGTAGA AAAGCAAAAC GACGACCTGA GAAAGACACC GACCCGGATC
TGTTTTCTTG CGATAGGATA ACGCTTGCAA GAGAGAAAAA CGGAATTGTA ACCTTGGTGC GTTCTTCGCT GAATCGACTC
TAAACTCGTT CGAATTTGCT CGACCTCACA CCTACTTCCG AGTTAACTAG GTTTGAGGGT GTGGGAACGT AAATTCCTCC
GAGTTTACGA GTTGACTCGC GATCTTGATA TCCTGATAGC AACATGTGCA GATTCTCTAA ACTGACGCTT AATTCTCTTG
TGGTCACATA ATTGAATATC TGAGCTTGTG TTGTTGAAAA CTTGAAATTG TTTTGTATCT CTGTATTTCT GTTGTTTATG
AATTTTGTAG GGTGAAGTGA TGAATATTTT TTTTCTTATG CAGTACAACC TTCCTTGACT GCAAGAACTT CAGTCTTCAA
GAATCTGCCA ATTAATTGCA AGTCTTTTCA TCCCTTCTTG TGTTAAAGTT TCTGGTTTTC CCATCAGATC CCAATCTAAT
ATGGTTCTTT TTTATTCGGG TTAAAAATTT TAGGAGTTGG CAAGATATGG CTACTAGACG TGTTCGTTAC TCCCCTCTTG
CCACAGACGA CGATGATATT GCTATTAATA GACCATTTGA CCCACGATTT GATTATACAC CGAAGGCCTT GGATAAAGTT
CCCTGGAAAT CCATTGCCCT TGCACTCTTC TTGCTATTCC TTGGTACAGG ACTTTTGTTT CTTTCATACT TTATCTTCAC
TGGTCATATG GGGGGAGAGC GTTCTCAAGC ATATGGCCTT TTAGCCCTTG GCTTCCTTAG CTTTCTCCCA GGTATGTTGG
ATTCCTTGAA TGTGATATGC ATTATGTATG TTAAGTATCT TGTTTAATGA ATGTAAGAAC AAGAAAATTA ATGGTTGTGA
CAACTCTTTG AGATTTTTGA GTTAGTATCC TTTTGGACGA ATTGGTTCTT AGTTATGCAT TACGAGCCGT AGAGATTTTT
TTAGCTCAAA CTGCATTTGA TCTTTACCCA GAGAAACACA TAAAGCATGC CAATTTTGTC AATGTTCAAT TGAATTTGGT
GAAATGGGGG GTGCTGGATG CACTTCTTTG TTAGCAGATA GATAATTCAC AAATCATAAA CCTTTACAAT GAATCAGTTA
AAAATGTTTC AAAGAAGCGT GGCATACCAA TACTAACCTG ATGATAATAT CATTGCATAT AATACGAAGC ATACCAGTAT
GGTCCATATC AGCTGTCCTC TTTGCCTATG CCATCACATA AAATATGCTA CCTTGACATT AACGTGCCAT TAATACTGTA
ACACAATTTC TTTAGCTAAC ACCTTTACTT GCTTAAAAAA ATACTTTGAT GTTTAATTCA ATGATGAGAG TAGAATAAGA
GGGGCATGGA ATGGGTAGAG GTGATCTTCA TCTCTATGAT TATGTTTACA ATTATGAATT AAGGATTATT TCCATCATAT
ATACGGAATG ATGTTTCTTC CGTAATTTTT AGCCCGTTTC ATTTGTTCTA GAGCATGAAA TGTCTCACTT CTTTTTTCCA
GAGATGCTTC TTCAACTATA AATTTTAATT TAGTTTGTAT CTACCAGGAC AATGCAGATA TTAACATATC TGCTACGTGG
ATCTTTTGCT GGAAACATAA TTTTTCTTGA TTTCTGTATA CAGGATTTTA TGAGACTCGA ATCGCATATT ATGCATGGAG
GGGTGCTCAA GGATACCGGT TTTCTGCCAT CCCTGATTAT TAGAGCATTA CTGTAAAAGA GTAACAGAGC TATACCTTGC
AAACTTTGTA ATGATCAAAT TTGGGGTTGC AACTTGTATG TTTGAATGAC TGAGAATAAA ATGGTAGATG TAATCGTTTT
GATAGAGAAG TAGTTAATCC AGTGACAAAA TTTAGAAAGA AAAATGCATA TCACTTGAAA TGATTTCAAT CAGAATTGTG
ACAATTGGGC ATTTCAGTGA GGTGAGATCA ACTCGTTAAT AACGTTTAAT TGTGA

>Vigan.05G058100.01
CTAAAGCCCA AAGATGACCC AACCCACTAA TTTGTATAGG TGGTGTCTGT GAAACGACGA GAGAAGAGAA AGGAAACACG
GCAGAGTAAT AAGATCGCTG GCTGTCCAGG AGAACGTAGA AAAGCAAAAC GACGACCTGA GAAAGACACC GACCCGGATC
TGTTTTCTTG CGATAGGATA ACGCTTGCAA GAGAGAAAAA CGGAATTGTA ACCTTGGTGC GTTCTTCGCT GAATCGACTC
TAAACTCGTT CGAATTTGCT CGACCTCACA CCTACTTCCG AGTTAACTAG GTTTGAGGGT GTGGGAACGT AAATTCCTCC
GAGTTTACGA GTTGACTCGC GATCTTGATA TCCTGATAGC AACATGTGCA GATTCTCTAA ACTGACGCTT AATTCTCTTG
TGGTCACATA ATTGAATATC TGAGCTTGTG TTGTTGAAAA CTTGAAATTG TTTTGTATCT CTGTATTTCT GTTGTTTATG
AATTTTGTAG GGTGAAGTGA TGAATATTTT TTTTCTTATG CAGTACAACC TTCCTTGACT GCAAGAACTT CAGTCTTCAA
GAATCTGCCA ATTAATTGCA AGTCTTTTCA TCCCTTCTTG TGTTAAAGTT TCTGGTTTTC CCATCAGATC CCAATCTAAT
ATGGTTCTTT TTTATTCGGG TTAAAAATTT TAGGAGTTGG CAAGATATGG CTACTAGACG TGTTCGTTAC TCCCCTCTTG
CCACAGACGA CGATGATATT GCTATTAATA GACCATTTGA CCCACGATTT GATTATACAC CGAAGGCCTT GGATAAAGTT
CCCTGGAAAT CCATTGCCCT TGCACTCTTC TTGCTATTCC TTGGTACAGG ACTTTTGTTT CTTTCATACT TTATCTTCAC
TGGTCATATG GGGGGAGAGC GTTCTCAAGC ATATGGCCTT TTAGCCCTTG GCTTCCTTAG CTTTCTCCCA GGATTTTATG
AGACTCGAAT CGCATATTAT GCATGGAGGG GTGCTCAAGG ATACCGGTTT TCTGCCATCC CTGATTATTA GAGCATTACT
GTAAAAGAGT AACAGAGCTA TACCTTGCAA ACTTTGTAAT GATCAAATTT GGGGTTGCAA CTTGTATGTT TGAATGACTG
AGAATAAAAT GGTAGATGTA ATCGTTTTGA TAGAGAAGTA GTTAATCCAG TGACAAAATT TAGAAAGAAA AATGCATATC
ACTTGAAATG ATTTCAATCA GAATTGTGAC AATTGGGCAT TTCAGTGAGG TGAGATCAAC TCGTTAATAA CGTTTAATTG
TGA

>Vigan.05G058100.01
ATGGCTACTA GACGTGTTCG TTACTCCCCT CTTGCCACAG ACGACGATGA TATTGCTATT AATAGACCAT TTGACCCACG
ATTTGATTAT ACACCGAAGG CCTTGGATAA AGTTCCCTGG AAATCCATTG CCCTTGCACT CTTCTTGCTA TTCCTTGGTA
CAGGACTTTT GTTTCTTTCA TACTTTATCT TCACTGGTCA TATGGGGGGA GAGCGTTCTC AAGCATATGG CCTTTTAGCC
CTTGGCTTCC TTAGCTTTCT CCCAGGATTT TATGAGACTC GAATCGCATA TTATGCATGG AGGGGTGCTC AAGGATACCG
GTTTTCTGCC ATCCCTGATT ATTAG

>Vigan.05G058100.01
MATRRVRYSP LATDDDDIAI NRPFDPRFDY TPKALDKVPW KSIALALFLL FLGTGLLFLS YFIFTGHMGG ERSQAYGLLA
LGFLSFLPGF YETRIAYYAW RGAQGYRFSA IPDY*