GBrowse Details

Vigan.05G051200.01

Basic Information:
Name: Vigan.05G051200.01
Multiple alignment
Variant Information
Position: Chr05:3606929..3608936 (+ strand)
Length: 2008
Functional Information:
Description: Similar to Uncharacterized protein. [I1MER1, Glycine max]
GO: Biological Process: lipid metabolic process (GO:0006629)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
InterPro: Lipase, GDSL (IPR001087)
SGNH hydrolase-type esterase domain (IPR013831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,6.67,10.91,0.04,6.84,0.18,11.40
Arabidopsis thaliana homolog: AT5G45910.1
Automatic updates:
Name: NM_001255576 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GDSL esterase/lipase At5g45910-like (LOC100815771), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:3606929..3606980 (+ strand)
Length: 52
Type: five_prime_UTR
Position: Chr05:3606981..3607230 (+ strand)
Length: 250
Type: CDS
Position: Chr05:3607317..3607538 (+ strand)
Length: 222
Type: CDS
Position: Chr05:3607636..3607781 (+ strand)
Length: 146
Type: CDS
Position: Chr05:3607913..3608186 (+ strand)
Length: 274
Type: CDS
Position: Chr05:3608403..3608635 (+ strand)
Length: 233
Type: CDS
Position: Chr05:3608636..3608936 (+ strand)
Length: 301
Type: three_prime_UTR

>Vigan.05G051200.01 class=Sequence position=Chr05:3606929..3608936 (+ strand)
GTATGCTCTA CTTATATTTG TGTTATTTCT CAACAACGTT AATAGAAAGA CTATGAAGAT CTATATTTTT TTGGTCGTTG
CCTCCTTAAC CTTTGGTTTC CACGAGAAAG TTGTTTCAAG TCGAAACCTT AGCCCATATA ATGCAATTTT CAATTTTGGT
GACTCTTTAA GTGACACGGG CAATCTCCTT GCTTCTGGAG CCTTGTCATT CCCAGTCATA GGAAAGTTTC CCTACGGTCA
AACCTTCTTT AATCGCTCAA CCGGTCGTTG CTCAGATGGA CGACTAGTAA TTGATTTCAT AGGTACGTGC TGTGTAATTG
TGTATATAAC CACCATGACT TGCTTCTGGT AATACTCACT TGTCATCATG ATTTTTGAAT TTTTGTAGCT GAGGCATATA
AGTTGCAATA TTTACTACCC TATCTGGCAT TAACCAAAGA CCAAAATATC CATCCTGGAG TAAATTTTGC CGTTGCTGGA
GCCACAGCAC TTGATACAAA ATTCTTCATT GAAGCCGGGC TGGGAAAATT TCTTTGGACA AATAATTCAT TGAACATTCA
GCTTGGCTGG TTTAAGAAAC TTAAACCCTC CCTTTGCAAC AGTAAACTAG GTAACATGAA AACCAAAGAA AACACTTGCA
TGTGTTTTTC TTATGATGTT TCCACAATAA AACATGTATT TTATTATTGT CCCCTTATAT GTCACAGATT GTGATAGCTA
CTTCGAACGC TCTCTCTTTG TGGTGGGGGA GATCGGTGGT AATGATTATA ACTATGCTGC CATTGCTGGA AATATTACTC
AACTTCAAGC TACCGTTCCT CCTGTTGTTG AAGCGATAAA AACGGCCATC AATGTAATCT TATATCAAAC TAAGTGCATT
ATTCATATCA GCCTGAACTC AATTTCTTGA GAAACGTGGT TGATAACGAT ATGAGTGCAC TCTATTACAT CAACTGATTT
CACTTTTCTC CCTTATTTTG ATAGGAATTG ATAGCTGAAG GAGCAAGGGA GCTGTTGGTG CCGGGGAATT TGCCAATTGG
GTGCTCTGCG CTATACCTGA CTTTATTCAG AAGCGAGAAG AAGGAGGACT ACGATGGAAA TGGATGCTTG AAATCTTTCA
ATGGTTTTGC AGAGTACCAT AACAAGGAGC TCAAGCTAGC TCTGAAGACA CTAAGGCAAA TGAATCCTCA TGCAAGGATA
CTGTACGCAG ATTATTATGG CGCTGCCAAA CGGTTCTTCC ATGCACCAGG ACACTATGGT TAGCTCTTTT GAAAAATATA
CAGCATTTAA AAATGATATT TAAAAATGAT ATTTCGTATG AACAAGATCG TCATCGTACG TGATTTAAAA ATGATTTATT
ATGCCGTGCT ATCATTTTGA AATCGTACTC AAGATTTGGT GGATTTGGTT GGAGAAATTT ATTTTGTGAT TATTAAGAGT
CACCTAAATT TGTATGAGTT GATTGAATAT ACAGGGTTTT CTAGTGGGGC GTTGAGAGCA TGCTGTGGAG CACCTGGGCC
ATACAACTTC AATATCTCGG CAAGGTGTGG TCACATTGGT TCAAAGGTAT GTGCAGATCC ATCCACACAT GCAAACTGGG
ATGGAATTCA TTTGACAGAA GCAGCATATA AGTACATCGC CAAAGGTCTA ATTTACGGTC CATTCTCATA TCCTCCCCTC
AAGACCTCTC CCTACAAGAT AGCCTAGTGC TGATAACACC ACCAAAAAAT CTCTCACAAT GACCTCCTAA TAAGAAATTT
TCAGTTGTTT ATGGCATAAC TATTGTCTGA GTTCCAATAC AAGGCTCTTT CAATGGCAAT TCTTTGTTCA CTGTCAACTG
TACCATTGAC TTCGGCTCCT CTTTATGTTT GGATGGTGAA TTTAGGGATC AAAGAAATTG AGATGACAGT TAGGTTGCTT
GATGCAGATC GTGTTTCGTT ATGTATTAAG AATCTTGAGA TTTTAGTTTA CTTGTACTCT CTCGTAGATT TGATTGTTAA
TATATAAA

>Vigan.05G051200.01
GTATGCTCTA CTTATATTTG TGTTATTTCT CAACAACGTT AATAGAAAGA CTATGAAGAT CTATATTTTT TTGGTCGTTG
CCTCCTTAAC CTTTGGTTTC CACGAGAAAG TTGTTTCAAG TCGAAACCTT AGCCCATATA ATGCAATTTT CAATTTTGGT
GACTCTTTAA GTGACACGGG CAATCTCCTT GCTTCTGGAG CCTTGTCATT CCCAGTCATA GGAAAGTTTC CCTACGGTCA
AACCTTCTTT AATCGCTCAA CCGGTCGTTG CTCAGATGGA CGACTAGTAA TTGATTTCAT AGCTGAGGCA TATAAGTTGC
AATATTTACT ACCCTATCTG GCATTAACCA AAGACCAAAA TATCCATCCT GGAGTAAATT TTGCCGTTGC TGGAGCCACA
GCACTTGATA CAAAATTCTT CATTGAAGCC GGGCTGGGAA AATTTCTTTG GACAAATAAT TCATTGAACA TTCAGCTTGG
CTGGTTTAAG AAACTTAAAC CCTCCCTTTG CAACAGTAAA CTAGATTGTG ATAGCTACTT CGAACGCTCT CTCTTTGTGG
TGGGGGAGAT CGGTGGTAAT GATTATAACT ATGCTGCCAT TGCTGGAAAT ATTACTCAAC TTCAAGCTAC CGTTCCTCCT
GTTGTTGAAG CGATAAAAAC GGCCATCAAT GAATTGATAG CTGAAGGAGC AAGGGAGCTG TTGGTGCCGG GGAATTTGCC
AATTGGGTGC TCTGCGCTAT ACCTGACTTT ATTCAGAAGC GAGAAGAAGG AGGACTACGA TGGAAATGGA TGCTTGAAAT
CTTTCAATGG TTTTGCAGAG TACCATAACA AGGAGCTCAA GCTAGCTCTG AAGACACTAA GGCAAATGAA TCCTCATGCA
AGGATACTGT ACGCAGATTA TTATGGCGCT GCCAAACGGT TCTTCCATGC ACCAGGACAC TATGGGTTTT CTAGTGGGGC
GTTGAGAGCA TGCTGTGGAG CACCTGGGCC ATACAACTTC AATATCTCGG CAAGGTGTGG TCACATTGGT TCAAAGGTAT
GTGCAGATCC ATCCACACAT GCAAACTGGG ATGGAATTCA TTTGACAGAA GCAGCATATA AGTACATCGC CAAAGGTCTA
ATTTACGGTC CATTCTCATA TCCTCCCCTC AAGACCTCTC CCTACAAGAT AGCCTAGTGC TGATAACACC ACCAAAAAAT
CTCTCACAAT GACCTCCTAA TAAGAAATTT TCAGTTGTTT ATGGCATAAC TATTGTCTGA GTTCCAATAC AAGGCTCTTT
CAATGGCAAT TCTTTGTTCA CTGTCAACTG TACCATTGAC TTCGGCTCCT CTTTATGTTT GGATGGTGAA TTTAGGGATC
AAAGAAATTG AGATGACAGT TAGGTTGCTT GATGCAGATC GTGTTTCGTT ATGTATTAAG AATCTTGAGA TTTTAGTTTA
CTTGTACTCT CTCGTAGATT TGATTGTTAA TATATAAA

>Vigan.05G051200.01
ATGAAGATCT ATATTTTTTT GGTCGTTGCC TCCTTAACCT TTGGTTTCCA CGAGAAAGTT GTTTCAAGTC GAAACCTTAG
CCCATATAAT GCAATTTTCA ATTTTGGTGA CTCTTTAAGT GACACGGGCA ATCTCCTTGC TTCTGGAGCC TTGTCATTCC
CAGTCATAGG AAAGTTTCCC TACGGTCAAA CCTTCTTTAA TCGCTCAACC GGTCGTTGCT CAGATGGACG ACTAGTAATT
GATTTCATAG CTGAGGCATA TAAGTTGCAA TATTTACTAC CCTATCTGGC ATTAACCAAA GACCAAAATA TCCATCCTGG
AGTAAATTTT GCCGTTGCTG GAGCCACAGC ACTTGATACA AAATTCTTCA TTGAAGCCGG GCTGGGAAAA TTTCTTTGGA
CAAATAATTC ATTGAACATT CAGCTTGGCT GGTTTAAGAA ACTTAAACCC TCCCTTTGCA ACAGTAAACT AGATTGTGAT
AGCTACTTCG AACGCTCTCT CTTTGTGGTG GGGGAGATCG GTGGTAATGA TTATAACTAT GCTGCCATTG CTGGAAATAT
TACTCAACTT CAAGCTACCG TTCCTCCTGT TGTTGAAGCG ATAAAAACGG CCATCAATGA ATTGATAGCT GAAGGAGCAA
GGGAGCTGTT GGTGCCGGGG AATTTGCCAA TTGGGTGCTC TGCGCTATAC CTGACTTTAT TCAGAAGCGA GAAGAAGGAG
GACTACGATG GAAATGGATG CTTGAAATCT TTCAATGGTT TTGCAGAGTA CCATAACAAG GAGCTCAAGC TAGCTCTGAA
GACACTAAGG CAAATGAATC CTCATGCAAG GATACTGTAC GCAGATTATT ATGGCGCTGC CAAACGGTTC TTCCATGCAC
CAGGACACTA TGGGTTTTCT AGTGGGGCGT TGAGAGCATG CTGTGGAGCA CCTGGGCCAT ACAACTTCAA TATCTCGGCA
AGGTGTGGTC ACATTGGTTC AAAGGTATGT GCAGATCCAT CCACACATGC AAACTGGGAT GGAATTCATT TGACAGAAGC
AGCATATAAG TACATCGCCA AAGGTCTAAT TTACGGTCCA TTCTCATATC CTCCCCTCAA GACCTCTCCC TACAAGATAG
CCTAG

>Vigan.05G051200.01
MKIYIFLVVA SLTFGFHEKV VSSRNLSPYN AIFNFGDSLS DTGNLLASGA LSFPVIGKFP YGQTFFNRST GRCSDGRLVI
DFIAEAYKLQ YLLPYLALTK DQNIHPGVNF AVAGATALDT KFFIEAGLGK FLWTNNSLNI QLGWFKKLKP SLCNSKLDCD
SYFERSLFVV GEIGGNDYNY AAIAGNITQL QATVPPVVEA IKTAINELIA EGARELLVPG NLPIGCSALY LTLFRSEKKE
DYDGNGCLKS FNGFAEYHNK ELKLALKTLR QMNPHARILY ADYYGAAKRF FHAPGHYGFS SGALRACCGA PGPYNFNISA
RCGHIGSKVC ADPSTHANWD GIHLTEAAYK YIAKGLIYGP FSYPPLKTSP YKIA*