GBrowse Details

Vigan.05G037400.01

Basic Information:
Name: Vigan.05G037400.01
Multiple alignment
Variant Information
Position: Chr05:2477531..2481902 (- strand)
Length: 4372
Functional Information:
Description: Similar to uncharacterized LOC101206733. [XP_004168002.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,7.07,1.13,1.02,11.17,1.69,0.34,1.25
Arabidopsis thaliana homolog: AT1G11120.1
Automatic updates:
Name: NM_001250850 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527043 (LOC100527043), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2477531..2477947 (- strand)
Length: 417
Type: three_prime_UTR
Position: Chr05:2477948..2478124 (- strand)
Length: 177
Type: CDS
Position: Chr05:2481252..2481545 (- strand)
Length: 294
Type: CDS
Position: Chr05:2481546..2481902 (- strand)
Length: 357
Type: five_prime_UTR

>Vigan.05G037400.01 class=Sequence position=Chr05:2477531..2481902 (- strand)
GTAAAAATAT TTATATTACG ATTTTATCCA GACAGAAAAA CAAAAGACAG GGTCCTAAAT CCAAATTCCA AAGTTTCTCC
TTTTTTGCAA GGGGCAGCCA CCCCACATGT TTGCTCCTTT CTCTCTCTTG AATGCTCAAA TTAAGAACAG TGCTGAGTTG
AGAGCTACTA TAAAGCCAAA CCTTAACCTG TAGTAGTCAC CATATTCTTC CCTGCCTGCA CTGCACCACT TCTTCATCTC
TCTTTACTAT CTCGTCTTCT TCTTCAACTT TACAGTCACT AATGCCTGAA ATTCAAACGT GAACAGAAGC CAACTTGTCC
AGAATGGTAA AACAGAGTTA AGAAAAGCAA AGGAAGAATG GTGAGAGAGC ACAATAGCAT TAGCAGTGGA TGGCCACCAA
TAGGGGCACC ACTGAACATG CAGAGAGATG AATATGATCA GCATTGGAGC AGCAGCTTCG ACAGTTCAGT AAATGCTGTT
TCTTTTGGCT TTGTTGCCAC TGCCATTCTC ATTTCTATGT TCTTAGTCAT GGCCATCTTT GAAAGGTTTC TCAAACCCAC
CTCGCCGCCC CTGTTGCCGT CAGCCGACTG GAACCGTCGC CGGAGCTCTC AGATGGCCTT CAATGGGAAG ATTGGCCACC
CTTCACCGAA AGTGAGTGCT AAAAAACTCA TTTTTTTCAT GGGTTGTGCT GCGTGAGTGT TCACTGCTCA TTACAGTTTC
ATGACAATGT GAAAGCCTTT AACTTTTTTG CTTTTTGGCC TCGGCTCTTG CGTTTTCCTA TTGTTAATGG TGGACACACA
GTGCCTTCCT TGTTGAATGT TACTGTTTTT TGGTTCTCTT TTTTCTTTCC TTTCAAGTTT TCCCTCAACT AAACAGAAAG
AGGAAAAAAA TGAAGGATTT TCTCTTTGTT CTTCCACTTT AGGAAGCTTT TAATTTCGGT AGTTATTTTG GATTTTGGAA
GAGTGATGAT TACTTATCTG ACATAAAGCT CTTTTTACCT AATTTCTTTG GTTGTTTTTA GGTTGCTTTT TACTCGCTTC
TCTTTCTGGT TGAATATTAT CCCTCCCATA AATTTCATTT TGTTTTCCAC ACTATATTAG AATAATGGTT TCTTAATGAG
GATTATCTTT TTTCTACTGA ATTCCTCTGC CTGCCCATTT GACTAATTCA AGATGTTTTT TTATGTTCCT CGTCATTTCT
GACACTGTTA TCCTTCAGTA TTACACATTC TTGATCTCTT TTTTAGACCT TCTCTGCATT TTCTTGTTCC ACTGGCCCTA
ACATTCTCAT CCAACTCTAT GGTCTTGCTT TACAGATTTC CTTGTTGGCC TCAGACTAGA GGTTGTTCTT CTTTCATCCT
TAAATAGACC CAACCGTGAT TATGCTTTTC TTCACTTTGG AGAAGCGCTA CTCTATTAGT TTACCGTGTT TTAGCCTTAT
AGCCTCTTCC CCATTTACCC TTAAATTTAT CTTTTGTAAA AAGGGGAAAT CTTGCAAAAT CTGAATTTTT ATCTGAAAAC
ATTATTGTCT CCCTTTCTTT TTTTTGGTTA TTTGAACTAA AGAACTCTAG CATAACTCCT AACCAAAGTT TTTCATTCCA
TTCTCCTTGT ATTTACTCGT TCAGTCAAAT ACCTTAATTA TGAGTAGACT TCGTTGTCCT CTGCTTTTTA TGAGGGCCTG
GTCCTCCGTA AAAGTTTTCT GTTAGCATTG GTCCCTAGCC GCTAGTATTG TGGACTTATT AATCCATGTC TGAGTCGGAG
TTGAGACCCA CATTGTTGTT TTTGACACTC AACTGCACCA TCACCTCCAA TCTTCAATCA TACCGTACAT GTTTGTGGTC
TGCGACAGAT TGTCGACCAA AGTTAAACTT ATTATGGTCT TCTTATTCTT GTCATTAATT CTCTATCCTA GTAGCTACTA
ATTCAGAAGG TAATCACACA TCCTATCGTA GCCATTGGTC AATAACTTTT TCCTTTAACA TTTTAGGCTT AGCTTTCATA
TGATGAGCTA GAACCAAGAA ACAATTGTGT TGCCTACTCT ATGCCGTTAC TTTGGAGGAA CACTCCAGGC CCACCTACTT
ATCCAACCTC GCTGTTCTGT TGGAGGGCAC CAGTTTGATT AGGACATTGC CTGTAGAGTT GTTTCTCTCA ACTTTAACAA
AATCATTAAT GTGATTCCTC CAGCATTAGC CAATGAAGTT TTGATTGCAA AAGGTCCACA AATAATATAA AATTAAATGC
ATCATTTGTT TGGCATTTGG ATTACATTTG GAATTTCGTT GTGGTGTTAA TGGAACATAG AATATGGGAT TCTAGAGAAC
ATGCTTTTGC AATTAAGCAG ATGTCATAGA TTCTTTTTAT TGTTTATGGT AATGATGCCA CTCGGTCAGC CTTAGACCAC
GTGAAGATGA TTTTTCTTAT TAATGAAATA ATATGATATA AAAGTCACCT CAGCATCACA GCAACAGACT ATACTCTGGA
AAACATATTG AATTACTGAT TTCGATTCTT GAATAGCTAA TTGTAAATCC AAAATCTTCC TGGGACGTGG AGTGTTCAAT
TCTTAAGTGT CCAAGGTGTA AAGATTTTAG TTATGGATGT GCAAAAATAT AATCCAAAGC CAACCGTCTT GGTTTTACTA
TTATATTTTT TGGATCCATA ATCTGTGTTA ATATCTATCT AGGTGGACAC ATTTAATCTC CTTTATTTTA TATTGTGTTA
TAAGTCAAAT GCATGATACG ATGTTGGATG ATGTTGGTGC CTTATACAAC AAATGTGTCC AGATAGGGAG AAAAGGGAAA
TAGCAATGTT GGGTTCGATG AATGTGTTGT CTCTGTTGCT TATTTTATTT CATTTTTTAC GTTAGTGAGG TCAAGATTCC
GAGTACATTG AAAATCTTGT ATTTTCGAAA CTTTAATTTC TTTGATGTTT GATGGGATGC ATATCACTAG TCTGGCCTTG
GTTTGTAAGT TTAGCATGAG ATGCAAATAA TTTAGCACCA CAATTCTGTT TAATCATTGT TTCTTTTAAT GACAGTTTAG
GTGGCCCATT AGTGTTTTAG CTTTACAATT TTAAAAAGTA AGATATCAAT ATCGTTAGTT ATTGCTGCAA ATGAAGCAAT
TTGATTTGTT ATTCTACTTG TGTGGTTGGT TGTCTTACAC TGTTTGAAAT GTTCTTATCC TTGGTGTTCT TCTCCTTTTC
CTATCCATTA TAACACTGTC TGAATAAGTC TTGCTGATAA TCTGTAATAG GCAATTAGTT AATTTCTCCT TGCAGACATT
TTACTGTTTT TCTTTTTAGC AGTCGGTTTC TCTTAAAAAG TTGTACTGTT TGCTTATTGT TTTGAAAATA AACTGGGAAT
AGTGATGCAG CTGTTGCTTT ACAACATTGA TGATTGCAGG CATTAAATTG CTTGACCTTA AAAAGAAGTC TTGTGATTTT
CAACAAGACA TTTAATGTTA TTGCCTTCAA TTTGAGATGT GATGTTGAGA GCAATGAGTT TAATAATAAT AAAAAAAAGT
ATATGTTGCT TTTCTCCCAA GTTTGCAGTG GACAATGATT TGTCAAGCCC TTTCTAGTTT GATTTATGGT CCACTCGTGG
TGTAAAATAA CTCCTTTATT CCAACTATGC TGGACATCAC AACTCAATTC ACCTATTGTA GAAGATAAAA GTTTTTATAT
TTTAAACGTC AAAACCAATG ATGTTATGTT CTAATTTCAC TCTCTGCTTG ATATTTCATC AATTGTGTGA AATTCACCAG
CTTCTCTAAT TTGTACAGAT GAGTTTGTAT GCAAGCTGGG TTTCGGTTTT AATGCCTGGA GATGAGACTC CTTCTTTCAT
CGCTCATCCT GCACCTGCAC CATGTTGCCC TGAACGGATA TCATGGCCTC CCCATCAACA TAGCTCAGTA CCTTATTCCA
CTTACACCAC CATGCATAAC ATCAACCAAG TATAATAAGA ATTCAGTGTG ACAAGTTTAT GCAATGTGTG CATGTTACAT
TAAGGAGTTA AATGCCTTTC AAATGAAGAA AGTAGACTTG TTATGTAGAA GATTTCTTTA TAGTTTATAG AATACCATGT
ACATAGAATT TAGTTTAGTG GAAATTGGTT TGGGAATGAG GTCCATCTCT TCACTGTCCA ATTCCTCCCT GACAGAAGCT
TTGGGGTTTC CCAGAGTGTA AATCAGTGGT TGTAAATGCA TAGAATGTTG TGCACCAAAC AATGGAAACC TCTTTATCTT
GCACACAAAC AAAGACCATA CTTAGTATAG CATGATCAAA ACGCACGCGT AAAATCAAAT AATATTGTCA CTCTGATAAT
GACACGTGAG TAGCTTTTAC CATAATTGTC AGTTTGGTCG TTGGAATCCT CG

>Vigan.05G037400.01
GTAAAAATAT TTATATTACG ATTTTATCCA GACAGAAAAA CAAAAGACAG GGTCCTAAAT CCAAATTCCA AAGTTTCTCC
TTTTTTGCAA GGGGCAGCCA CCCCACATGT TTGCTCCTTT CTCTCTCTTG AATGCTCAAA TTAAGAACAG TGCTGAGTTG
AGAGCTACTA TAAAGCCAAA CCTTAACCTG TAGTAGTCAC CATATTCTTC CCTGCCTGCA CTGCACCACT TCTTCATCTC
TCTTTACTAT CTCGTCTTCT TCTTCAACTT TACAGTCACT AATGCCTGAA ATTCAAACGT GAACAGAAGC CAACTTGTCC
AGAATGGTAA AACAGAGTTA AGAAAAGCAA AGGAAGAATG GTGAGAGAGC ACAATAGCAT TAGCAGTGGA TGGCCACCAA
TAGGGGCACC ACTGAACATG CAGAGAGATG AATATGATCA GCATTGGAGC AGCAGCTTCG ACAGTTCAGT AAATGCTGTT
TCTTTTGGCT TTGTTGCCAC TGCCATTCTC ATTTCTATGT TCTTAGTCAT GGCCATCTTT GAAAGGTTTC TCAAACCCAC
CTCGCCGCCC CTGTTGCCGT CAGCCGACTG GAACCGTCGC CGGAGCTCTC AGATGGCCTT CAATGGGAAG ATTGGCCACC
CTTCACCGAA AATGAGTTTG TATGCAAGCT GGGTTTCGGT TTTAATGCCT GGAGATGAGA CTCCTTCTTT CATCGCTCAT
CCTGCACCTG CACCATGTTG CCCTGAACGG ATATCATGGC CTCCCCATCA ACATAGCTCA GTACCTTATT CCACTTACAC
CACCATGCAT AACATCAACC AAGTATAATA AGAATTCAGT GTGACAAGTT TATGCAATGT GTGCATGTTA CATTAAGGAG
TTAAATGCCT TTCAAATGAA GAAAGTAGAC TTGTTATGTA GAAGATTTCT TTATAGTTTA TAGAATACCA TGTACATAGA
ATTTAGTTTA GTGGAAATTG GTTTGGGAAT GAGGTCCATC TCTTCACTGT CCAATTCCTC CCTGACAGAA GCTTTGGGGT
TTCCCAGAGT GTAAATCAGT GGTTGTAAAT GCATAGAATG TTGTGCACCA AACAATGGAA ACCTCTTTAT CTTGCACACA
AACAAAGACC ATACTTAGTA TAGCATGATC AAAACGCACG CGTAAAATCA AATAATATTG TCACTCTGAT AATGACACGT
GAGTAGCTTT TACCATAATT GTCAGTTTGG TCGTTGGAAT CCTCG

>Vigan.05G037400.01
ATGGTGAGAG AGCACAATAG CATTAGCAGT GGATGGCCAC CAATAGGGGC ACCACTGAAC ATGCAGAGAG ATGAATATGA
TCAGCATTGG AGCAGCAGCT TCGACAGTTC AGTAAATGCT GTTTCTTTTG GCTTTGTTGC CACTGCCATT CTCATTTCTA
TGTTCTTAGT CATGGCCATC TTTGAAAGGT TTCTCAAACC CACCTCGCCG CCCCTGTTGC CGTCAGCCGA CTGGAACCGT
CGCCGGAGCT CTCAGATGGC CTTCAATGGG AAGATTGGCC ACCCTTCACC GAAAATGAGT TTGTATGCAA GCTGGGTTTC
GGTTTTAATG CCTGGAGATG AGACTCCTTC TTTCATCGCT CATCCTGCAC CTGCACCATG TTGCCCTGAA CGGATATCAT
GGCCTCCCCA TCAACATAGC TCAGTACCTT ATTCCACTTA CACCACCATG CATAACATCA ACCAAGTATA A

>Vigan.05G037400.01
MVREHNSISS GWPPIGAPLN MQRDEYDQHW SSSFDSSVNA VSFGFVATAI LISMFLVMAI FERFLKPTSP PLLPSADWNR
RRSSQMAFNG KIGHPSPKMS LYASWVSVLM PGDETPSFIA HPAPAPCCPE RISWPPHQHS SVPYSTYTTM HNINQV*