GBrowse Details

Vigan.05G032900.01

Basic Information:
Name: Vigan.05G032900.01
Multiple alignment
Variant Information
Position: Chr05:2152866..2156049 (+ strand)
Length: 3184
Functional Information:
Description: Similar to Uncharacterized protein. [I1ME85, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Nitric oxide synthase-interacting (IPR016818)
Zinc finger, RING-type, conserved site (IPR017907)
Replication termination factor 2, RING-finger (IPR027799)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:211.72,95.58,27.80,33.28,29.87,62.53,33.72,24.68
Arabidopsis thaliana homolog: AT1G61620.1
Automatic updates:
Name: NM_001317431 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max nitric oxide synthase-interacting protein-like (LOC100786703), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2152866..2153084 (+ strand)
Length: 219
Type: five_prime_UTR
Position: Chr05:2153085..2153323 (+ strand)
Length: 239
Type: CDS
Position: Chr05:2155033..2155708 (+ strand)
Length: 676
Type: CDS
Position: Chr05:2155709..2156049 (+ strand)
Length: 341
Type: three_prime_UTR

>Vigan.05G032900.01 class=Sequence position=Chr05:2152866..2156049 (+ strand)
AAATTAGGAA AATGTTAAGA AATTTGAAAA GGCCATTAAA ACTGAGAGGC CGAGCCCATT AAGGGGTCCA GTTCAATTCT
GGTTGCTTCT TGAGGTTCCC TTGACGCGAC GGAACCAAGT CAAAGTCTAA GTTGAAGATC TGAAACCCTA GCAATCGATC
GTTTTGTGGT GTGATAAGGG ATCGTGTCTG TGTAAGTTGA GAATTGTGAT TTGAGGAAGA TGCCTCAGAG ACACTCGAAG
AACAACAACG ATCTCGCGTT CTTCACGTAC GACGAGAAGC GAAAACTAGG ATATGGGACT CAGAAAGAGA GGTTGGGGAA
AGACTCCATC AAGCCCTTCG ACGCGTGTTG CCTCTGCCTC AAATCCCTAA TCGATCCCAT GAGCTGCCAC AAGGGCCACC
TCTTTTGCAA AGAGTGCATT CTCCAGTGTC TATTGTCTCA GAAGAAAGAC ATTCAAAGGT ATCCATTCGT TGCCCTTTTT
TATTCTGTGC CTGAAATTGT AGAGTCTATG ATCGAACTCC AAGTATATGC GTCGTTCAAA TTCCTGCTGA CGAATGACGT
TGAAATTAGG GATACGTAAT TATTAATCGA ATTGTATTGG TCGTTCTGTA GTTATCTTTG TTAAGGGTGG GAGGGAGGGT
TCGTATGAAA TTTTTGATAT ATACTTTTAT ATTTACTTCC TAACGAATTG TTTTGTTTTA TCGAAGCTGT GCGATCGTAT
TGGCGTTCTG TGAACTAAGA ATATTCGTTG TTTTGCTAGA ATTCATGGGT GGAGCTTTCT TCAAGGATAG TTTTTGTTCT
TTGATATGAT CAATACGCTT CACTATTTTT TTTAATGTTT TGGTATTCGG ATAGTTGAGC CGTGTTGTTT AAGGCATCCC
TTTTGAGTGT TGTATGATTT TTTTTTTCTT TTTGTGAATT TGGGTTGAAT TATATATGCT GCGATTCAGT AATGGTACAG
CAGGCTTGTA AAGGTGATGT CCTTCCTGTG CCTATTGGTT TGTTTCTTGT CTCTGTCTCG ACAGTCCTTT ATGCAATCTG
CAGATTGAAG ATTTTCGCTT GTTATGTCCT CTTTGAGATA TGCGAGTTAA GACTAGATTG GGAGATAGCT TGAGAAAAAC
TCGGATGATA AGAATATTCT TTATCGCTTT GGAATTAGGT TATGGAATCT GGTTTCCTAA TGGACACCAT AGCTCCACTT
TTTAAGTTAG ATGTCACATT TTATAAGTAT GCTATATAAA ATGGATATAT TCGTGTTTGT ATGCTATCTG GTGACTAAAT
ATGAAGAATG AGAACTGATA ACACTGACAC ATCAGAAGTT TGAAGAACTA TTTCTTGGAC ATCCTTGTTC AAACAAAATT
TTGCAATTTA GGTTAATGGA AACCGTTATC TTTTTGTTTA ATAGCTTTAG TTGTTCCATA GGATTTGATT CTTTAACTTC
CTCACTCTTA ATATGGATTT CATTGGGTTC TTCTGAAAGA AAACTAAAGG ATTGGGGGAC GTACATGGTA TTTTTTTTCT
TTTACTGAAA AGGAAGGATG AAATCCACTA TTTTAGATGT TTTTTCTTTT CTGCTTATTT TTGTTTATGA AATGAAGATT
GGGGGGATTC CTCAGTAGTT AAGGAAATTA ACTAATAAGA TGAAAAGTAT CACTTTCTGT CATAAGTCAT AATATCATTT
ACCGCTGGTT ATCAACTATT TGATAAATTC TAATCATGAT TGACCATTTC TGTGTGCCGC TGAAGTTTAA TACTTTTATT
ACATTACCTT TGTTTTTTCT TGTGATATGG TTCCTGTTGA CCATCATTAG CCCTTATCAG TGAGCTTTTT CCATTTGCCT
TGTTTAATTT AACTTTCCCT TGTCATCAAT ATTTATAATG CTTCACTTTT AGCTACTAGA TCCCATCTCT GGTTTACATA
TTGCATGGGG CTACCATTTA AAATATTTAT TCTATCAACC ATTCCTTAAC CTTTTTAACT TCATTTACAA TAAAGGAAAT
GATTTTACCA TTCCTATCAA GAAGGATTTG CTGTTCTATG TGATTGCTCA GAAGTTTTAA ATCTATATTG TCTTTGTTTA
CTATATTTTC CTTGGTGTGA ATCCAATGGC TGTTAAGTTG TGAACCTTAA CAATGTGATT GCAATATTGA TATATATAAT
AAAACAGGAA GCTTGCAGCC CATGCTGCTC AGCAGAAGCA AGAAAAAGAG GAGGAAGAAG AGAAGTTAAT GTTGCAAAAG
GCCAAAGAGC TTGATGCATT TGATCAACAG AATCATGGTG CTGTTCCACA ATATAGTGAC AGAAATTATA GCCGTGATAA
GAATGGTTTC CATGGGGCAA ACAGTGTGAA GGTCACTTCC TATGAGGAAG AAGCCCTTCG GACAATGAAG GCATTTTGGC
TGCCTTCTGC TACGCCCGAA GCTTCTGTTA AAGTAGAGGC ACCTTCTACC AGTACTATCT GTCCGGAAGG CAAGGAGAAA
TTGAAGTTGA AGTCACTTTT CCCTGTCCAG TTTACCGAGG ATACGAGTGA GCAGAAAAAA TCCAAGGCAC TTGACAAGAC
CTACATTTGC CCAAGCTGCA AAGTTACTCT CACCAACACA ATGTCGCTTG TGGCCCTCAG TTCATGTGGG CATGTCTTTT
GCAAGAAGTG TGCTGATAGA TTTATGGCCG TTGATAAAGT CTGTCTTGTC TGCAACAAGG CTTGTAAAGA GAGAAATTTG
GTGAGTTTGG AGAAGGGAGG AACAGGTTTT GCTGGTCATG GGGATCATCT TCAAGCCACA GACTTCAAGC ATTTGGGAAG
TGGTAGTGGA TTGGGGCTGG TTAGACCTGC AATGAAAACT TGACGCCTTA TATATTGATT TGGGTCGTTA GGTGTATGAT
TCTCTATTCA GGGAAAGAAA ATTATGTTTT AACTTCTCTT AATGATGTTG TTACGTCGTT ATCATGGTAA TCAGAATCTG
TGTTATCTAT GGTTTTCTAC TTTGTTTACT GTATTTTAGT TTTTGTTCAC CCGAGAAAAA TCTTGATAAC GTGAAAAATC
GTCTTGATGG GCGAGAGATT ATCTACCTTG TAAAAATGGA TTCATTCTTA GCTGTCACCA CTGGAGGTTG GTGGGCGAGA
AATCATCTAC CATGTTGATG GGGTTTGCTA ATATGAAATT ATTAATAAAC AGCTATAAAC TTTT

>Vigan.05G032900.01
AAATTAGGAA AATGTTAAGA AATTTGAAAA GGCCATTAAA ACTGAGAGGC CGAGCCCATT AAGGGGTCCA GTTCAATTCT
GGTTGCTTCT TGAGGTTCCC TTGACGCGAC GGAACCAAGT CAAAGTCTAA GTTGAAGATC TGAAACCCTA GCAATCGATC
GTTTTGTGGT GTGATAAGGG ATCGTGTCTG TGTAAGTTGA GAATTGTGAT TTGAGGAAGA TGCCTCAGAG ACACTCGAAG
AACAACAACG ATCTCGCGTT CTTCACGTAC GACGAGAAGC GAAAACTAGG ATATGGGACT CAGAAAGAGA GGTTGGGGAA
AGACTCCATC AAGCCCTTCG ACGCGTGTTG CCTCTGCCTC AAATCCCTAA TCGATCCCAT GAGCTGCCAC AAGGGCCACC
TCTTTTGCAA AGAGTGCATT CTCCAGTGTC TATTGTCTCA GAAGAAAGAC ATTCAAAGGA AGCTTGCAGC CCATGCTGCT
CAGCAGAAGC AAGAAAAAGA GGAGGAAGAA GAGAAGTTAA TGTTGCAAAA GGCCAAAGAG CTTGATGCAT TTGATCAACA
GAATCATGGT GCTGTTCCAC AATATAGTGA CAGAAATTAT AGCCGTGATA AGAATGGTTT CCATGGGGCA AACAGTGTGA
AGGTCACTTC CTATGAGGAA GAAGCCCTTC GGACAATGAA GGCATTTTGG CTGCCTTCTG CTACGCCCGA AGCTTCTGTT
AAAGTAGAGG CACCTTCTAC CAGTACTATC TGTCCGGAAG GCAAGGAGAA ATTGAAGTTG AAGTCACTTT TCCCTGTCCA
GTTTACCGAG GATACGAGTG AGCAGAAAAA ATCCAAGGCA CTTGACAAGA CCTACATTTG CCCAAGCTGC AAAGTTACTC
TCACCAACAC AATGTCGCTT GTGGCCCTCA GTTCATGTGG GCATGTCTTT TGCAAGAAGT GTGCTGATAG ATTTATGGCC
GTTGATAAAG TCTGTCTTGT CTGCAACAAG GCTTGTAAAG AGAGAAATTT GGTGAGTTTG GAGAAGGGAG GAACAGGTTT
TGCTGGTCAT GGGGATCATC TTCAAGCCAC AGACTTCAAG CATTTGGGAA GTGGTAGTGG ATTGGGGCTG GTTAGACCTG
CAATGAAAAC TTGACGCCTT ATATATTGAT TTGGGTCGTT AGGTGTATGA TTCTCTATTC AGGGAAAGAA AATTATGTTT
TAACTTCTCT TAATGATGTT GTTACGTCGT TATCATGGTA ATCAGAATCT GTGTTATCTA TGGTTTTCTA CTTTGTTTAC
TGTATTTTAG TTTTTGTTCA CCCGAGAAAA ATCTTGATAA CGTGAAAAAT CGTCTTGATG GGCGAGAGAT TATCTACCTT
GTAAAAATGG ATTCATTCTT AGCTGTCACC ACTGGAGGTT GGTGGGCGAG AAATCATCTA CCATGTTGAT GGGGTTTGCT
AATATGAAAT TATTAATAAA CAGCTATAAA CTTTT

>Vigan.05G032900.01
ATGCCTCAGA GACACTCGAA GAACAACAAC GATCTCGCGT TCTTCACGTA CGACGAGAAG CGAAAACTAG GATATGGGAC
TCAGAAAGAG AGGTTGGGGA AAGACTCCAT CAAGCCCTTC GACGCGTGTT GCCTCTGCCT CAAATCCCTA ATCGATCCCA
TGAGCTGCCA CAAGGGCCAC CTCTTTTGCA AAGAGTGCAT TCTCCAGTGT CTATTGTCTC AGAAGAAAGA CATTCAAAGG
AAGCTTGCAG CCCATGCTGC TCAGCAGAAG CAAGAAAAAG AGGAGGAAGA AGAGAAGTTA ATGTTGCAAA AGGCCAAAGA
GCTTGATGCA TTTGATCAAC AGAATCATGG TGCTGTTCCA CAATATAGTG ACAGAAATTA TAGCCGTGAT AAGAATGGTT
TCCATGGGGC AAACAGTGTG AAGGTCACTT CCTATGAGGA AGAAGCCCTT CGGACAATGA AGGCATTTTG GCTGCCTTCT
GCTACGCCCG AAGCTTCTGT TAAAGTAGAG GCACCTTCTA CCAGTACTAT CTGTCCGGAA GGCAAGGAGA AATTGAAGTT
GAAGTCACTT TTCCCTGTCC AGTTTACCGA GGATACGAGT GAGCAGAAAA AATCCAAGGC ACTTGACAAG ACCTACATTT
GCCCAAGCTG CAAAGTTACT CTCACCAACA CAATGTCGCT TGTGGCCCTC AGTTCATGTG GGCATGTCTT TTGCAAGAAG
TGTGCTGATA GATTTATGGC CGTTGATAAA GTCTGTCTTG TCTGCAACAA GGCTTGTAAA GAGAGAAATT TGGTGAGTTT
GGAGAAGGGA GGAACAGGTT TTGCTGGTCA TGGGGATCAT CTTCAAGCCA CAGACTTCAA GCATTTGGGA AGTGGTAGTG
GATTGGGGCT GGTTAGACCT GCAATGAAAA CTTGA

>Vigan.05G032900.01
MPQRHSKNNN DLAFFTYDEK RKLGYGTQKE RLGKDSIKPF DACCLCLKSL IDPMSCHKGH LFCKECILQC LLSQKKDIQR
KLAAHAAQQK QEKEEEEEKL MLQKAKELDA FDQQNHGAVP QYSDRNYSRD KNGFHGANSV KVTSYEEEAL RTMKAFWLPS
ATPEASVKVE APSTSTICPE GKEKLKLKSL FPVQFTEDTS EQKKSKALDK TYICPSCKVT LTNTMSLVAL SSCGHVFCKK
CADRFMAVDK VCLVCNKACK ERNLVSLEKG GTGFAGHGDH LQATDFKHLG SGSGLGLVRP AMKT*