GBrowse Details

Vigan.05G023200.01

Basic Information:
Name: Vigan.05G023200.01
Multiple alignment
Variant Information
Position: Chr05:1471893..1473685 (- strand)
Length: 1793
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7BUX3, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
InterPro: Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain (IPR001179)
Peptidyl-prolyl cis-trans isomerase, FKBP-type (IPR023566)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:247.53,143.20,126.83,54.44,138.29,201.75,104.44,67.32
Arabidopsis thaliana homolog: AT5G64350.1
Automatic updates:
Name: NM_001248870 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500283 (LOC100500283), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249402 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305505 (LOC100305505), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:1471893..1472596 (- strand)
Length: 704
Type: three_prime_UTR
Position: Chr05:1472597..1472698 (- strand)
Length: 102
Type: CDS
Position: Chr05:1473037..1473089 (- strand)
Length: 53
Type: CDS
Position: Chr05:1473205..1473266 (- strand)
Length: 62
Type: CDS
Position: Chr05:1473340..1473373 (- strand)
Length: 34
Type: CDS
Position: Chr05:1473489..1473576 (- strand)
Length: 88
Type: CDS
Position: Chr05:1473577..1473685 (- strand)
Length: 109
Type: five_prime_UTR

>Vigan.05G023200.01 class=Sequence position=Chr05:1471893..1473685 (- strand)
GAAGGAGTAT AAAAGAAGAA CACGGAAGAG GAGACAGAAC AGAGGAGTGA AGAGAAGAAG GAAGAAGAAG AAGAAGAAAC
AGAGAAAAGA AAAGGAATCA GAGAAGAAAA TGGGAGTGGA GAAGCAATTG TTGAGGCCTG GCACCGGTCC CAAGCCACTT
CCTGGTCAAC ACGTCACCGT TCACTGCACT GGTTTCGGTT CGTTTCTCTC TCTCTCCCTT TCCCTTTCTA AACCCTAAAT
CTCTCTCTTT TCCCAGCGTT CTTAGATCTC ACCCTTCTTT CATGTGCTTA CCGTTGTCGA TTCTGTGTGC AGGGAAGAAC
GGCGACCTCA CTCAGAAATT TTGGAGGTTA CCTGATTACC ATTTCATTTA CGTCTTCCTT GCTTTTCAAT ACACTCATTC
ATCACTCTTT TTCTTGCAGC ACAAAGGATC CCGGCCAAAC CCCTTTCTCC TTTAAAATCG GCCAAGGCTC TGTCATCAAA
GGTATACCGT TTTCACTTAC TGATTATTCA TTATTTCTAT AATACTTCCT ATTTTTTGTT TTCTAATGTA AATTCATTGT
AATATCCTTT TTTTTTTCAA CTATCTGTGT CTGTAGGATG GGATGAAGGT GTGATTGGCA TGCAAATTGG TGAAGTTGCT
CGTCTCCGGG TAATGCTAGC AACTCCTTAT TCTTACATGT TCCCGCTTGA AAAATCTCAT AGCTTCTCGA ATCTTTTGTG
TAACTAGCAT TCTCACTTTT AGGAATATCC TTCATCCTTT CTCCTCTACA TATATATGCT TTGCTTTTAT CTGCATTAGT
CGATTTTTTT TCCCAATATT ACATCCAACT GAGTGTTTGG TGTCAATTCA AATTAGCTGT ATCTTACCAT TTGTTGGCGC
TGATGTACTT TTATTAATTC CTTGCTGTTT GTTTGTTGCT TCTTTTGGGA GTGGAGGGTT ATTTAATTTT ATAGAGCATT
TTGTTCACAT TGTTGATGAT CTTGCAGTGC ACTCCTGATT ATGCTTATGG TGCTGGTGGC TTTCCTGCTT GGGGAATACA
GCCCAACTCT GTTCTGGAAT TTGAAATCGA AGTCCTAAGT GTGAATTGAA AACCTTGTTA GTTTGTCTGT CTCCGCGCAA
AGAATAAGAG CATCTCTTTC CATGGGCATG TGTAACAGTA TCCCAATGCA ATGAGTGATA TTTAAGGTGG TTGAGTTGTT
TGATCTAAAT GCTAAATGAC TTCTTGAACT ATCTCAAACT TTTTTAATAT TATATTTCGT ACCTTTACTA TTCTTTTTTT
CATTTCTTGA GGAAATTAAT ATTATCTGAC AACGACATTA CCTTAAATTC TGCTTCCATG GGAAAGGATG AATTTTTTTT
TTTGGTATCT TACAGAATCT AGTGTTTTGA TCATTTGACC GATCTTCGCT AGTCTATCAT GATCATCGCA CTTGTAGATT
GATAGCATGT TTTTCTATTG TTAATAGCAA TAATAGTGAT ATTGTTATCA CGATTTGTTT TTGTTGGTAA AGCTGTTGCT
ACAATCCTAT ATTTGTGCTA GTTGCATGGA AATAGAACTA TTTTGGCTTT AACATCTTTG AATGTAGAAT ACATTGCTTA
TCTCATGAGC ATTTAGGTAC CGCTTGAACC TCTGATGCAG CCTCGGTTCC GGGTCGTTCT TTTTCTTCTT CTTCTTCATA
TGTTGCATCT TTTACTTGAG TTGTTTTCCT CTTCTGCTTC AATTTCTTGG TTTGGCCCAG TTGATAGATC AACGTGGAAT
TATGAGAATA ATTGTTGTTA TTAATGTAGA GAA

>Vigan.05G023200.01
GAAGGAGTAT AAAAGAAGAA CACGGAAGAG GAGACAGAAC AGAGGAGTGA AGAGAAGAAG GAAGAAGAAG AAGAAGAAAC
AGAGAAAAGA AAAGGAATCA GAGAAGAAAA TGGGAGTGGA GAAGCAATTG TTGAGGCCTG GCACCGGTCC CAAGCCACTT
CCTGGTCAAC ACGTCACCGT TCACTGCACT GGTTTCGGGA AGAACGGCGA CCTCACTCAG AAATTTTGGA GCACAAAGGA
TCCCGGCCAA ACCCCTTTCT CCTTTAAAAT CGGCCAAGGC TCTGTCATCA AAGGATGGGA TGAAGGTGTG ATTGGCATGC
AAATTGGTGA AGTTGCTCGT CTCCGGTGCA CTCCTGATTA TGCTTATGGT GCTGGTGGCT TTCCTGCTTG GGGAATACAG
CCCAACTCTG TTCTGGAATT TGAAATCGAA GTCCTAAGTG TGAATTGAAA ACCTTGTTAG TTTGTCTGTC TCCGCGCAAA
GAATAAGAGC ATCTCTTTCC ATGGGCATGT GTAACAGTAT CCCAATGCAA TGAGTGATAT TTAAGGTGGT TGAGTTGTTT
GATCTAAATG CTAAATGACT TCTTGAACTA TCTCAAACTT TTTTAATATT ATATTTCGTA CCTTTACTAT TCTTTTTTTC
ATTTCTTGAG GAAATTAATA TTATCTGACA ACGACATTAC CTTAAATTCT GCTTCCATGG GAAAGGATGA ATTTTTTTTT
TTGGTATCTT ACAGAATCTA GTGTTTTGAT CATTTGACCG ATCTTCGCTA GTCTATCATG ATCATCGCAC TTGTAGATTG
ATAGCATGTT TTTCTATTGT TAATAGCAAT AATAGTGATA TTGTTATCAC GATTTGTTTT TGTTGGTAAA GCTGTTGCTA
CAATCCTATA TTTGTGCTAG TTGCATGGAA ATAGAACTAT TTTGGCTTTA ACATCTTTGA ATGTAGAATA CATTGCTTAT
CTCATGAGCA TTTAGGTACC GCTTGAACCT CTGATGCAGC CTCGGTTCCG GGTCGTTCTT TTTCTTCTTC TTCTTCATAT
GTTGCATCTT TTACTTGAGT TGTTTTCCTC TTCTGCTTCA ATTTCTTGGT TTGGCCCAGT TGATAGATCA ACGTGGAATT
ATGAGAATAA TTGTTGTTAT TAATGTAGAG AA

>Vigan.05G023200.01
ATGGGAGTGG AGAAGCAATT GTTGAGGCCT GGCACCGGTC CCAAGCCACT TCCTGGTCAA CACGTCACCG TTCACTGCAC
TGGTTTCGGG AAGAACGGCG ACCTCACTCA GAAATTTTGG AGCACAAAGG ATCCCGGCCA AACCCCTTTC TCCTTTAAAA
TCGGCCAAGG CTCTGTCATC AAAGGATGGG ATGAAGGTGT GATTGGCATG CAAATTGGTG AAGTTGCTCG TCTCCGGTGC
ACTCCTGATT ATGCTTATGG TGCTGGTGGC TTTCCTGCTT GGGGAATACA GCCCAACTCT GTTCTGGAAT TTGAAATCGA
AGTCCTAAGT GTGAATTGA

>Vigan.05G023200.01
MGVEKQLLRP GTGPKPLPGQ HVTVHCTGFG KNGDLTQKFW STKDPGQTPF SFKIGQGSVI KGWDEGVIGM QIGEVARLRC
TPDYAYGAGG FPAWGIQPNS VLEFEIEVLS VN*