GBrowse Details

Vigan.05G018300.01

Basic Information:
Name: Vigan.05G018300.01
Multiple alignment
Variant Information
Position: Chr05:1190436..1196017 (- strand)
Length: 5582
Functional Information:
Description: Similar to Beta-hydroxyacyl-ACP dehydratase. [E6Y9A5, Arachis hypogaea]
GO: Biological Process: fatty acid biosynthetic process (GO:0006633)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: hydro-lyase activity (GO:0016836)
InterPro: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (IPR010084)
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (IPR013114)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.92,0.84,31.06,24.64,14.72,57.09,10.87,19.05
Arabidopsis thaliana homolog: AT5G10160.1
Automatic updates:
Name: BT096533 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-15J13 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253001 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase-like (LOC100790839), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:1190436..1192530 (- strand)
Length: 2095
Type: three_prime_UTR
Position: Chr05:1192531..1192782 (- strand)
Length: 252
Type: CDS
Position: Chr05:1195277..1195421 (- strand)
Length: 145
Type: CDS
Position: Chr05:1195505..1195565 (- strand)
Length: 61
Type: CDS
Position: Chr05:1195645..1195843 (- strand)
Length: 199
Type: CDS
Position: Chr05:1195844..1196017 (- strand)
Length: 174
Type: five_prime_UTR

>Vigan.05G018300.01 class=Sequence position=Chr05:1190436..1196017 (- strand)
ATTACCTTTT GCTACTCGCA CTTTCCACCA TTTAATTTCA TTGTTCTTGT CGCCATTCTT TGCTTTTAAC GTCCACCTGG
AATTGCTATT GCATTCACAT TCAATAACTC ACTCAGTGCC TCACTCTTCA ATTGCAAGCT TTGGTGTGAC TCTTCACTTC
ACATTTGAAA GCAAATGGCA GCGTCTGCTT TCTCCAACGC ATTGCTTTCT CCCGTGACAC TTCCTTCCAA ACCCAAATCT
ATTTCCTTTC AACCCAGATT CCCACTTCTC AAATTCCCCA GCACCAGATC CCACCCCTCG TTGAGCAAAA CGACCACGTT
TTGTTCCTCG GATGCCGCCG ATGCTCCTCA ACATGACACC CCAATTGAAT TAAGTACGAG TTTTAATTTT GTTTTTCCCG
TTTGATTCTC TATTCGTTTC AATTTTCTTC CTTGATAGTG TGCACTTTGC AGGGTATCCG GCATTTCCAA CAGTCATGGA
TATCAACCAG ATTCGTGACA TTTTGCCCCA CAGGTACTCT CAGCGTTCTT TTCTTCCTCT CTTGTTTGTT TTCTGAACGT
TGATGAGATT CACATTCACC TTTTTTCTTG ATTCAGGTTT CCTTTCCTTC TGGTGGATAG AGTAATTGAG TACAATCCTG
GCGTTTCTGC TGTCGCCATA AAGAATGTGA CAATAAATGA CAATTTCTTT CCTGGACATT TTCCAGAAAG GCCCATCATG
CCGGGTGTTC TCATGATTGA GGTATTAAGC TATACACTAT GCTGATTATT GGCCCTACCT TTCTATTTTG GTGTTGCCTT
GTCTGTAATC ATGTGATTTT AATTCTCGTG TATATGCAAT GAGATTAGCT ATTTATATGA TTAAATGTAA TAGAATAGAA
TCAATTTGTT ACAATGTCTA GACTGAGATT AGTGGTATAA ATTTTGTGAT ATCTCATATA TCTGTATTGA TTTAGGTAGA
TATATCGTTA TAGTAGCTTG TTTAAAACTA TAAGGATGAA AAACCTCTTG TAAACTTTGC ATTTGAAAAA TGATATATCC
ATTTATTTGA ACTTAAAAGT GTTGTGGTTG CAAACTTTAT ATTCTCCTAG AGTTTTTTGT TCTTTTTAAA CTTGCAATTA
TCCTGGAGAG GAACTTCTTT AATATAAAAT TTGAAAGATA CTAAACATAA TTGTATCAGG CATCAAATTA GATTAACTTA
GTTCTAATGA AACCTTTCTT GAATTGATAA AGGGCGGTGT GATTGCTTGC TGTCACAATT TTCCATAATG AAATGTGCAC
CTCTGTTGAA AGTGGTCTGA CTGTATTAAC CAGTGAGAAA ACCTATGAAT TTGACTAACA GAACCAATAA AAATTTGATG
ATGTTCATTT AGATGCTTTA CAGCATTTAA AACATTCTTT AGTGCTGTAT GGAGCCGTAA TTTGATTCTT TTCTTTTTGA
AAATGAATCA ATGTTATTAT TGTAATTTCT CTCTTTCCAT GCATGTCTCC TTAATAGTGA ACTCATGGAT ATAGTACAGG
ATATGGTAAA TGTAAACATT TTCCTATATT TATCTTTTTC TTTATTATAT ATGTTGTCAT AAATTCAAAA GGCACCAAAA
GAATGAAGTA GTCAACTGTT GATGTTTTTG CATAGGGTAA TAAAAAAAGT TTTGAATTAG AGGACAAATA CTTTTAGTCG
GATATATAGG AATTTTGAGA GCTTCGGAAT TCTAGATTAA GTTTTTCCCA CTCGTGGTAG TTCTTCAATT CACCCTACAG
TGGCTATCAG CAAATCAGTT AAGCTTGTAG CTCTTGGACC ATGAGTTTTG TTTCGATTAT GCAAATGAAA AAAATCTTGA
CTTAGTTTTA CGTCATTGGT TTGCTTCACA AGTCCTGAAT GTGGGCCGGG ATTAGCAAAT GTTAATGGTA TATAGATGAT
GTTGTGGCCA TGTATAGGAC ATGTTCCTTG CTTGTTTTCA CGGCTTTTAA ATGTTTAGTT GTATCTGCTT TTAAAGAAGT
TGTTTTGGTA ATGCTACAAC GGCAGGCTTG TAGCTTTTTC AGTCTTTCAT TTGTTAATAC ATATTTCTCT GTGCTAGATT
ATGAGACATA TCAAATGCTC TTATCTGCCA TATCGAGATC ATGTTTGCAT TAGACCTGTG TCTTTGCATC TACTAGTTCA
ATTAAACACA GAAACTACTT CCATGGCATG TCTGGTGTAA ATAATGACAT ATTCTCGGAT TCATGAGTTT TTGCTTCGAA
AGTCATCTTA AGTAGTGGAA TTAATTTGAC ATTCCTGCAA AAGGACGATG GGACTGTGAA AGAGAGATAT TTTCTGAGTT
TTTTAACAAA TCACGTTTTA GCTTGCTAAA ATTTAAAAAC TAGAGAGTAA TTTTTGAAAA GCTACTCCAT TGGGGGAACT
TTAACAAATC CAGTGTTATA TTATAGCTTG CTAAAATATT ACTTCAAAGA AAAAAAAAGC AAGCGGATTA TATTAGCAAA
TCGTATGTTT GTAGATTAGA AATATAGAAG GTTATTCTAG GTCATGGCAT CCACTTGAGT CCCATACTTT ATAAGCAGGT
CTGCATTTCA CTAAATGAAT GGCTTAAATG TTATTAATTA ATCTTAATAT GCATCGAGAT TTGAGATTGA TAAGTTCGTT
TGCCTAACTT TATGTTCATA TTTTTTCCTC GATTTCGAAA ACCAATGCTC TTTCATTCTT TCTTTCTTCC TTTCTTTCTC
TTTCAAGTTT CATGTCTCAC TTATGACATC TTTTGTCCAT GGTCAGAAAA TAAATTTAAC CGTGTAGCAT GCATGCATTT
TTCTGGGTTG AGTGCTTTAT GCTCCAACGA AACATTGTCC CTTGTTGTCT ACCGTATTGT CAAAATTTGT TTCCCTTTTA
CCATTTTATA TGCAGTCTCT GAAACTGGTT TTATATCGTT ATCTTGATTA GACCGACATA CATCAGACTA CGATCACTTG
TTACATTGTT AAGCTCATTT ATATTCAGTG AACTATAATT CCTAGGCTCC AACTTCTGTA GCACTTCTTT TGTTGAGATG
AACAACCATC CTCTTTAAGT TTCTAAGTTA GTTGTAAGCT TTAGAACTGC ACGCAAAAAG ACTCTGTAAT AGCTCTATTT
CACTACAAAC TATCTCAACT CCAATGTAAG AATGTAAAGA AAAGAGGGAA AAATTTATTT GATTTCTGTT AATCTGCTTT
AAAAGTGGGC ATGAACATGA GGTCTTTTGT TGCAGGCAAT GGCACAAGTT GGCGGTTTGG TCATGTTGCA ACCTGAAGTG
GGAGGTTCTC GTGAAAACTT CTTCTTTGCT GGAATAGACA AAGTGCGATT TCGTAAGCCA GTGATTGCAG GGGACACCTT
AGTTATGAGA ATGACGCTTA CTAAGCTGCA AAAGCGATTT GGAATAGCAA AGATGGAAGG GAAGGCATAT GTTGGAGGTG
AAGTTGTGTG TGAGGGTGAA TTTTTGATGG CGATGGGGAG TGGATAAGTA GACACATTCC TTTCGACTGG AATAGAGTTC
ATATTCTTCC ATCTTTAAAT TTAATTGCTT CTGCTTTTGA ATGCAGAACG TTGTGAACAT TTAGATTAAT GTATGCATTT
TCAACGAAAT CTATCTGAAC CTTCTGTTCT AGTTCTCCAT ATGACTTTGC TTTGGTTGTT TTGTTATTTA ATACAAGTTT
ATCTTTTAGA CGGATGAGCT CAATGGCATT TGACCTTGTG TTCTCTCATC CAAATTTGTT TTCATTCAGA GTACTTGTTT
ATGGCAATCC AATATTGTAT ACATTTTTTA CCCAATTGTG CATAAAAAAG ATACTTGAAA CTCCATACGA CTAGGCTACA
CAATCAGGCA CTAGCAATAT TTTCAAATCA GCCTTATGAC TTCAACTACT CCTGGCTTGA GAATGAAAAG TAAATGCAAG
TATTTATACG GTGGCTACAT TAGAGTACTA CTGATATAAA GTGAACGCAT CCATATTAGA GCATAGAATT TGAATTTGTC
ATGGGGTAAC ACAAACAGGA CAAAGGTTCA TTTGCAACTC CAGCCTCTCA ATTCAATTAT CTACATGAAT TGTGTAGTTT
ACAAGCCAAG TGCGCCTAGG GGGGTCTTTC CTTGTCCAGC CTCAAAGTAG AAAATCAGCA TGGCCAACAT AGCAATCCTG
GCATGCTTAA TCTCAGCTAA TTTCAATCTT TCCAGCTTCT CTGTATCCGG GATGTAAACT CCATCCTTGA GAGTGCCAGC
GAAGCCCAAA GGGTCAAAGA ATTTGCCTCC TGGGTACCCT TGTTCACCAG TAGCATTGGC AAAGTTCTCA GCAGTTTTTG
ACCATGGAGT GGCCCATTCC ACTGACTGTG AGTCTGGGTT GAAGAAATCC ACCCATCTCT TGCTCTCAAC CCATCCCATA
AGAATCAATT GGGTTCCCAA AAGAGAACCA AAGGAAAAAG GAGCAATTGC ATTGGGGTCA GCTCCAGCCT CAAACCATGG
CACTCCACTC CAGGCCTGCC CTACAAAGAT ACCTAAAACT GCAGCCATTG CCCACCTCCC ATGAATCAGC TCAGCTTCTC
TGTACCATTT CAGGAATGCC GGGTCCTTCC CCAGGCCTAG TGGGTCAAAA CCAAAGTCAC CTGGTAGCCT GCACTTGAAA
CATTATAAAT CAATTTCCAA AGAGAAATTT GGAGGAAAAA GTGAAGAGAG AAAATGGGAA AATTTGTTTT CAGAATTCAA
AATATGCAAC TTCACCAAGT TCATGCCCCA CCACATTCAA CATCGTTCCA GATTACTCAC CTTAAGCTAG GACATCATAC
AACACCATTT CATGGTTTCT AAAACACTTT AATTTAGAAA CATGTTTTTC AGAAAATGAA AAAAAATATA TTTCTGAATA
GCCATGGAAT TATGTCAGAA AACACATTTT GAAATAAAAA AGTATGAAGG AATTTGGGTG GACTCACGAT CCATCAAGCC
ATTCTGGGTC GACGAGATTG CCACCAGCTC TAACACCAGG GAGCCATGAC TTCTTTGGTG CTGCTGCAGC TACCACAATG
AGTCTTCTAG GACTAACTGC AACACCGACT TTGCCTCCAA TGGAAGTGGC CAGAAGGGTT TGGCTCCTGC TTCCTCCACT
CAAGAAGGAA GATCCCAACC CATTTAACAC AGCACCAGAT GTTGCAGCTG CCATCACTCT ATAAAGTTCT CTGGAGACGG
TGAGAAAATA GAGGCTGCTT TTGAGGTTTA CTTGTAAAAT GCAGCACTCA GGGAGATTTT ATGTGTGTGT GGATGTGAAG
TGTGAGAGAA TCTAAGGAGT TGTCATAGCA GGCCAGGTAG GATGGTGAAA TCTGTAGAAG AAATCTTATG GAACAACGGA
TAGATTTCGG ACCAATAGGA ACTAGATGTC CATCCTCATC CCAAGTTGCT TCCAGCCACG TGGACAACTC AACAACCTAT
TCCCTCCACT TAAGTTGTTC TTGTAATAGA ATCACGTCCC AACAAAACCA TTTTAATGAA GCAATATGTG GATCACTACA
AACCTACTTC TTCACCTCAC AAAAACCATG GCATATTCGT TATTTCAACT GCTACTTATC TA

>Vigan.05G018300.01
ATTACCTTTT GCTACTCGCA CTTTCCACCA TTTAATTTCA TTGTTCTTGT CGCCATTCTT TGCTTTTAAC GTCCACCTGG
AATTGCTATT GCATTCACAT TCAATAACTC ACTCAGTGCC TCACTCTTCA ATTGCAAGCT TTGGTGTGAC TCTTCACTTC
ACATTTGAAA GCAAATGGCA GCGTCTGCTT TCTCCAACGC ATTGCTTTCT CCCGTGACAC TTCCTTCCAA ACCCAAATCT
ATTTCCTTTC AACCCAGATT CCCACTTCTC AAATTCCCCA GCACCAGATC CCACCCCTCG TTGAGCAAAA CGACCACGTT
TTGTTCCTCG GATGCCGCCG ATGCTCCTCA ACATGACACC CCAATTGAAT TAAGGTATCC GGCATTTCCA ACAGTCATGG
ATATCAACCA GATTCGTGAC ATTTTGCCCC ACAGGTTTCC TTTCCTTCTG GTGGATAGAG TAATTGAGTA CAATCCTGGC
GTTTCTGCTG TCGCCATAAA GAATGTGACA ATAAATGACA ATTTCTTTCC TGGACATTTT CCAGAAAGGC CCATCATGCC
GGGTGTTCTC ATGATTGAGG CAATGGCACA AGTTGGCGGT TTGGTCATGT TGCAACCTGA AGTGGGAGGT TCTCGTGAAA
ACTTCTTCTT TGCTGGAATA GACAAAGTGC GATTTCGTAA GCCAGTGATT GCAGGGGACA CCTTAGTTAT GAGAATGACG
CTTACTAAGC TGCAAAAGCG ATTTGGAATA GCAAAGATGG AAGGGAAGGC ATATGTTGGA GGTGAAGTTG TGTGTGAGGG
TGAATTTTTG ATGGCGATGG GGAGTGGATA AGTAGACACA TTCCTTTCGA CTGGAATAGA GTTCATATTC TTCCATCTTT
AAATTTAATT GCTTCTGCTT TTGAATGCAG AACGTTGTGA ACATTTAGAT TAATGTATGC ATTTTCAACG AAATCTATCT
GAACCTTCTG TTCTAGTTCT CCATATGACT TTGCTTTGGT TGTTTTGTTA TTTAATACAA GTTTATCTTT TAGACGGATG
AGCTCAATGG CATTTGACCT TGTGTTCTCT CATCCAAATT TGTTTTCATT CAGAGTACTT GTTTATGGCA ATCCAATATT
GTATACATTT TTTACCCAAT TGTGCATAAA AAAGATACTT GAAACTCCAT ACGACTAGGC TACACAATCA GGCACTAGCA
ATATTTTCAA ATCAGCCTTA TGACTTCAAC TACTCCTGGC TTGAGAATGA AAAGTAAATG CAAGTATTTA TACGGTGGCT
ACATTAGAGT ACTACTGATA TAAAGTGAAC GCATCCATAT TAGAGCATAG AATTTGAATT TGTCATGGGG TAACACAAAC
AGGACAAAGG TTCATTTGCA ACTCCAGCCT CTCAATTCAA TTATCTACAT GAATTGTGTA GTTTACAAGC CAAGTGCGCC
TAGGGGGGTC TTTCCTTGTC CAGCCTCAAA GTAGAAAATC AGCATGGCCA ACATAGCAAT CCTGGCATGC TTAATCTCAG
CTAATTTCAA TCTTTCCAGC TTCTCTGTAT CCGGGATGTA AACTCCATCC TTGAGAGTGC CAGCGAAGCC CAAAGGGTCA
AAGAATTTGC CTCCTGGGTA CCCTTGTTCA CCAGTAGCAT TGGCAAAGTT CTCAGCAGTT TTTGACCATG GAGTGGCCCA
TTCCACTGAC TGTGAGTCTG GGTTGAAGAA ATCCACCCAT CTCTTGCTCT CAACCCATCC CATAAGAATC AATTGGGTTC
CCAAAAGAGA ACCAAAGGAA AAAGGAGCAA TTGCATTGGG GTCAGCTCCA GCCTCAAACC ATGGCACTCC ACTCCAGGCC
TGCCCTACAA AGATACCTAA AACTGCAGCC ATTGCCCACC TCCCATGAAT CAGCTCAGCT TCTCTGTACC ATTTCAGGAA
TGCCGGGTCC TTCCCCAGGC CTAGTGGGTC AAAACCAAAG TCACCTGGTA GCCTGCACTT GAAACATTAT AAATCAATTT
CCAAAGAGAA ATTTGGAGGA AAAAGTGAAG AGAGAAAATG GGAAAATTTG TTTTCAGAAT TCAAAATATG CAACTTCACC
AAGTTCATGC CCCACCACAT TCAACATCGT TCCAGATTAC TCACCTTAAG CTAGGACATC ATACAACACC ATTTCATGGT
TTCTAAAACA CTTTAATTTA GAAACATGTT TTTCAGAAAA TGAAAAAAAA TATATTTCTG AATAGCCATG GAATTATGTC
AGAAAACACA TTTTGAAATA AAAAAGTATG AAGGAATTTG GGTGGACTCA CGATCCATCA AGCCATTCTG GGTCGACGAG
ATTGCCACCA GCTCTAACAC CAGGGAGCCA TGACTTCTTT GGTGCTGCTG CAGCTACCAC AATGAGTCTT CTAGGACTAA
CTGCAACACC GACTTTGCCT CCAATGGAAG TGGCCAGAAG GGTTTGGCTC CTGCTTCCTC CACTCAAGAA GGAAGATCCC
AACCCATTTA ACACAGCACC AGATGTTGCA GCTGCCATCA CTCTATAAAG TTCTCTGGAG ACGGTGAGAA AATAGAGGCT
GCTTTTGAGG TTTACTTGTA AAATGCAGCA CTCAGGGAGA TTTTATGTGT GTGTGGATGT GAAGTGTGAG AGAATCTAAG
GAGTTGTCAT AGCAGGCCAG GTAGGATGGT GAAATCTGTA GAAGAAATCT TATGGAACAA CGGATAGATT TCGGACCAAT
AGGAACTAGA TGTCCATCCT CATCCCAAGT TGCTTCCAGC CACGTGGACA ACTCAACAAC CTATTCCCTC CACTTAAGTT
GTTCTTGTAA TAGAATCACG TCCCAACAAA ACCATTTTAA TGAAGCAATA TGTGGATCAC TACAAACCTA CTTCTTCACC
TCACAAAAAC CATGGCATAT TCGTTATTTC AACTGCTACT TATCTA

>Vigan.05G018300.01
ATGGCAGCGT CTGCTTTCTC CAACGCATTG CTTTCTCCCG TGACACTTCC TTCCAAACCC AAATCTATTT CCTTTCAACC
CAGATTCCCA CTTCTCAAAT TCCCCAGCAC CAGATCCCAC CCCTCGTTGA GCAAAACGAC CACGTTTTGT TCCTCGGATG
CCGCCGATGC TCCTCAACAT GACACCCCAA TTGAATTAAG GTATCCGGCA TTTCCAACAG TCATGGATAT CAACCAGATT
CGTGACATTT TGCCCCACAG GTTTCCTTTC CTTCTGGTGG ATAGAGTAAT TGAGTACAAT CCTGGCGTTT CTGCTGTCGC
CATAAAGAAT GTGACAATAA ATGACAATTT CTTTCCTGGA CATTTTCCAG AAAGGCCCAT CATGCCGGGT GTTCTCATGA
TTGAGGCAAT GGCACAAGTT GGCGGTTTGG TCATGTTGCA ACCTGAAGTG GGAGGTTCTC GTGAAAACTT CTTCTTTGCT
GGAATAGACA AAGTGCGATT TCGTAAGCCA GTGATTGCAG GGGACACCTT AGTTATGAGA ATGACGCTTA CTAAGCTGCA
AAAGCGATTT GGAATAGCAA AGATGGAAGG GAAGGCATAT GTTGGAGGTG AAGTTGTGTG TGAGGGTGAA TTTTTGATGG
CGATGGGGAG TGGATAA

>Vigan.05G018300.01
MAASAFSNAL LSPVTLPSKP KSISFQPRFP LLKFPSTRSH PSLSKTTTFC SSDAADAPQH DTPIELRYPA FPTVMDINQI
RDILPHRFPF LLVDRVIEYN PGVSAVAIKN VTINDNFFPG HFPERPIMPG VLMIEAMAQV GGLVMLQPEV GGSRENFFFA
GIDKVRFRKP VIAGDTLVMR MTLTKLQKRF GIAKMEGKAY VGGEVVCEGE FLMAMGSG*