GBrowse Details

Vigan.05G014400.01

Basic Information:
Name: Vigan.05G014400.01
Multiple alignment
Variant Information
Position: Chr05:903398..905356 (+ strand)
Length: 1959
Functional Information:
Description: Similar to Actin. [G7IL85, Medicago truncatula]
InterPro: Actin-related protein (IPR004000)
Actin, conserved site (IPR004001)
Actin/actin-like conserved site (IPR020902)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:78.25,65.62,156.11,116.19,127.08,170.55,72.31,163.72
Arabidopsis thaliana homolog: AT1G49240.1, AT2G37620.1, AT2G42090.1, AT2G42100.1, AT2G42170.1, AT3G12110.1, AT3G18780.2, AT3G46520.1, AT3G53750.1, AT5G09810.1, AT5G59370.1
Automatic updates:
Name: NM_001358096 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max actin-101 (LOC100778206), mRNA.
PubMed ID: 8896372 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:903398..903406 (+ strand)
Length: 9
Type: five_prime_UTR
Position: Chr05:903407..903466 (+ strand)
Length: 60
Type: CDS
Position: Chr05:903552..903945 (+ strand)
Length: 394
Type: CDS
Position: Chr05:904081..904694 (+ strand)
Length: 614
Type: CDS
Position: Chr05:904776..904841 (+ strand)
Length: 66
Type: CDS
Position: Chr05:904842..905356 (+ strand)
Length: 515
Type: three_prime_UTR

>Vigan.05G014400.01 class=Sequence position=Chr05:903398..905356 (+ strand)
TTTTAAAAGA TGGCTGATGC CGAAGACATT CAACCTCTTG TTGTTGATAA TGGAACGGGA ATGGTCAAGG TTAGGATATG
TTTTGTTTTG GCAATTGACC AGTACTTCTT GTGCTGAGTA CAGATTAATA TAATCTTTTC TGCAATGTTT GCAGGCTGGC
TTTGCAGGTG ATGATGCTCC TAGAGCTGTG TTCCCCAGTA TTATTGGGCG CCCGCGCCAT ACTGGTGTAA TGGTTGGAAT
GGGTCAGAAG GATGCTTATG TGGGTGATGA AGCCCAATCA AAACGAGGTA TACTCACCTT GAAGTATCCC ATAGAGCATG
GCATAGTCAG CAACTGGGAT GATATGGAGA AGATTTGGCA TCACACGTTT TACAATGAGC TTCGTGTTGC CCCTGAAGAA
CACCCTGTAC TTCTTACTGA GGCACCACTC AATCCCAAGG CCAACAGAGA GAAGATGACC CAAATTATGT TTGAGACTTT
CAATGTGCCT GCCATGTATG TGGCAATTCA GGCTGTCTTG TCTCTGTATG CCAGTGGACG TACTACAGGT TTGTTTCTGC
AATTGGTCTT GGATTCACTA TTTACTATGT TGTGATCATG TGACTTCAAT TGGATTCATT CAACTTATCA TTTGAGTAAA
TGCTGTAAGT TGGCTAAGTT CTGATTTTGT TTGTATTAAA CAGGTATTGT GCTTGATTCT GGCGATGGTG TAAGCCACAC
GGTGCCCATA TATGAAGGAT ACGCTCTTCC TCATGCAATT CTTCGGTTGG ATCTTGCTGG CCGTGACTTA ACGGAGTACT
TGGTGAAAAT TCTTACTGAG AGAGGATACT CCTTCAGCAC CTCTGCCGAA AAGGAAATTG TCCGTGATGT GAAGGAGAAA
TTGGCATATG TGGCCCTTGA TTTTGAACAA GAAATGGAGA CTACCAAGAG TAGTTCTGCA GTAGAGAAGA GCTATGAATT
GCCCGATGGA CAGGTCATTA CAATTGGTTC TGAGAGATTC CGTTGCCCTG AAGTACTGTT CCAGCCTTCT CTGATTGGTA
TGGAAGCTAC TGGAATTCAT GAAACGACAT ACAGCTCCAT CATGAAATGT GATGTTGATA TTAGGAAGGA TCTGTATGGA
AACATTGTGC TTAGTGGAGG GTCTACTATG TTTCCCGGAA TTGCTGATCG TATGAGCAAG GAAATCAGTG CTCTAGCACC
AAGCAGTATG AAAATCAAGG TGGTTGCACC TCCCGAGAGG AAGTACAGTG TCTGGATTGG TGGTTCTATC TTGGCATCAC
TAAGTACCTT CCAACAGGTT AGTACCCTGC AAATTACCTA TAAAACAGAT TTGTTTATGG AAGTATTGGG TGTTTATTTT
ATTCTCTTAT GTATGCAGAT GTGGATCTCC AAGGGTGAAT ATGATGAATC TGGGCCAGCT ATAGTTCACC GGAAGTGCTT
CTAAGATGGG TCATGAAGCT CTTAATGCTC CCAGTCCTGT GCCATATTTC CGTCAAGCTT GGTTGACTTG TTGGATATTT
GATGCTTTGG GTTTTTAATA GGTATATCTA GTTAATGAAT GGATTTGTAA GTTGAGTATG TTATATGTTT CCCCGTTAGG
TCGTTGGAAG CCAGACATTT TATGCAGTTG GCGATGGCAT TTGAACGTTG TAGGTTCTGC TTGGTTTGAT TTTCCTTTTA
TTCTTTTTTT ATGCTGTGGC AAAAAAATTA GGTGCCTCGA GATAGGAGGA CGATAAGTTT AAGCATCCTT TTTATTGGAG
GGATTTTTGA TTTAGTTTCT GTCGATATTA ATTATATGCT TAATTGGTTA TGTTTGCAGT ACAATGAGAA TGTGTTTTAT
TGTTTGAGGT GATGAATCCC TTGTATACAC CATTTGGTTA GTGTGAACAA GAATCGAGGA TTATGTGTTC TTTATCCTTG
CTGATGATAT TCATGAATAC AGTTCTGGAC GAATAAAAA

>Vigan.05G014400.01
TTTTAAAAGA TGGCTGATGC CGAAGACATT CAACCTCTTG TTGTTGATAA TGGAACGGGA ATGGTCAAGG CTGGCTTTGC
AGGTGATGAT GCTCCTAGAG CTGTGTTCCC CAGTATTATT GGGCGCCCGC GCCATACTGG TGTAATGGTT GGAATGGGTC
AGAAGGATGC TTATGTGGGT GATGAAGCCC AATCAAAACG AGGTATACTC ACCTTGAAGT ATCCCATAGA GCATGGCATA
GTCAGCAACT GGGATGATAT GGAGAAGATT TGGCATCACA CGTTTTACAA TGAGCTTCGT GTTGCCCCTG AAGAACACCC
TGTACTTCTT ACTGAGGCAC CACTCAATCC CAAGGCCAAC AGAGAGAAGA TGACCCAAAT TATGTTTGAG ACTTTCAATG
TGCCTGCCAT GTATGTGGCA ATTCAGGCTG TCTTGTCTCT GTATGCCAGT GGACGTACTA CAGGTATTGT GCTTGATTCT
GGCGATGGTG TAAGCCACAC GGTGCCCATA TATGAAGGAT ACGCTCTTCC TCATGCAATT CTTCGGTTGG ATCTTGCTGG
CCGTGACTTA ACGGAGTACT TGGTGAAAAT TCTTACTGAG AGAGGATACT CCTTCAGCAC CTCTGCCGAA AAGGAAATTG
TCCGTGATGT GAAGGAGAAA TTGGCATATG TGGCCCTTGA TTTTGAACAA GAAATGGAGA CTACCAAGAG TAGTTCTGCA
GTAGAGAAGA GCTATGAATT GCCCGATGGA CAGGTCATTA CAATTGGTTC TGAGAGATTC CGTTGCCCTG AAGTACTGTT
CCAGCCTTCT CTGATTGGTA TGGAAGCTAC TGGAATTCAT GAAACGACAT ACAGCTCCAT CATGAAATGT GATGTTGATA
TTAGGAAGGA TCTGTATGGA AACATTGTGC TTAGTGGAGG GTCTACTATG TTTCCCGGAA TTGCTGATCG TATGAGCAAG
GAAATCAGTG CTCTAGCACC AAGCAGTATG AAAATCAAGG TGGTTGCACC TCCCGAGAGG AAGTACAGTG TCTGGATTGG
TGGTTCTATC TTGGCATCAC TAAGTACCTT CCAACAGATG TGGATCTCCA AGGGTGAATA TGATGAATCT GGGCCAGCTA
TAGTTCACCG GAAGTGCTTC TAAGATGGGT CATGAAGCTC TTAATGCTCC CAGTCCTGTG CCATATTTCC GTCAAGCTTG
GTTGACTTGT TGGATATTTG ATGCTTTGGG TTTTTAATAG GTATATCTAG TTAATGAATG GATTTGTAAG TTGAGTATGT
TATATGTTTC CCCGTTAGGT CGTTGGAAGC CAGACATTTT ATGCAGTTGG CGATGGCATT TGAACGTTGT AGGTTCTGCT
TGGTTTGATT TTCCTTTTAT TCTTTTTTTA TGCTGTGGCA AAAAAATTAG GTGCCTCGAG ATAGGAGGAC GATAAGTTTA
AGCATCCTTT TTATTGGAGG GATTTTTGAT TTAGTTTCTG TCGATATTAA TTATATGCTT AATTGGTTAT GTTTGCAGTA
CAATGAGAAT GTGTTTTATT GTTTGAGGTG ATGAATCCCT TGTATACACC ATTTGGTTAG TGTGAACAAG AATCGAGGAT
TATGTGTTCT TTATCCTTGC TGATGATATT CATGAATACA GTTCTGGACG AATAAAAA

>Vigan.05G014400.01
ATGGCTGATG CCGAAGACAT TCAACCTCTT GTTGTTGATA ATGGAACGGG AATGGTCAAG GCTGGCTTTG CAGGTGATGA
TGCTCCTAGA GCTGTGTTCC CCAGTATTAT TGGGCGCCCG CGCCATACTG GTGTAATGGT TGGAATGGGT CAGAAGGATG
CTTATGTGGG TGATGAAGCC CAATCAAAAC GAGGTATACT CACCTTGAAG TATCCCATAG AGCATGGCAT AGTCAGCAAC
TGGGATGATA TGGAGAAGAT TTGGCATCAC ACGTTTTACA ATGAGCTTCG TGTTGCCCCT GAAGAACACC CTGTACTTCT
TACTGAGGCA CCACTCAATC CCAAGGCCAA CAGAGAGAAG ATGACCCAAA TTATGTTTGA GACTTTCAAT GTGCCTGCCA
TGTATGTGGC AATTCAGGCT GTCTTGTCTC TGTATGCCAG TGGACGTACT ACAGGTATTG TGCTTGATTC TGGCGATGGT
GTAAGCCACA CGGTGCCCAT ATATGAAGGA TACGCTCTTC CTCATGCAAT TCTTCGGTTG GATCTTGCTG GCCGTGACTT
AACGGAGTAC TTGGTGAAAA TTCTTACTGA GAGAGGATAC TCCTTCAGCA CCTCTGCCGA AAAGGAAATT GTCCGTGATG
TGAAGGAGAA ATTGGCATAT GTGGCCCTTG ATTTTGAACA AGAAATGGAG ACTACCAAGA GTAGTTCTGC AGTAGAGAAG
AGCTATGAAT TGCCCGATGG ACAGGTCATT ACAATTGGTT CTGAGAGATT CCGTTGCCCT GAAGTACTGT TCCAGCCTTC
TCTGATTGGT ATGGAAGCTA CTGGAATTCA TGAAACGACA TACAGCTCCA TCATGAAATG TGATGTTGAT ATTAGGAAGG
ATCTGTATGG AAACATTGTG CTTAGTGGAG GGTCTACTAT GTTTCCCGGA ATTGCTGATC GTATGAGCAA GGAAATCAGT
GCTCTAGCAC CAAGCAGTAT GAAAATCAAG GTGGTTGCAC CTCCCGAGAG GAAGTACAGT GTCTGGATTG GTGGTTCTAT
CTTGGCATCA CTAAGTACCT TCCAACAGAT GTGGATCTCC AAGGGTGAAT ATGATGAATC TGGGCCAGCT ATAGTTCACC
GGAAGTGCTT CTAA

>Vigan.05G014400.01
MADAEDIQPL VVDNGTGMVK AGFAGDDAPR AVFPSIIGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN
WDDMEKIWHH TFYNELRVAP EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG
VSHTVPIYEG YALPHAILRL DLAGRDLTEY LVKILTERGY SFSTSAEKEI VRDVKEKLAY VALDFEQEME TTKSSSAVEK
SYELPDGQVI TIGSERFRCP EVLFQPSLIG MEATGIHETT YSSIMKCDVD IRKDLYGNIV LSGGSTMFPG IADRMSKEIS
ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KGEYDESGPA IVHRKCF*