GBrowse Details

Vigan.04G433000.01

Basic Information:
Name: Vigan.04G433000.01
Multiple alignment
Variant Information
Position: Chr04:53761141..53763151 (+ strand)
Length: 2011
Functional Information:
Description: Similar to Xyloglucan endotransglucosylase/hydrolase. [V7D2P4, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: cellular glucan metabolic process (GO:0006073)
Cellular Component: cell wall (GO:0005618)
Cellular Component: apoplast (GO:0048046)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762)
InterPro: Glycoside hydrolase, family 16 (IPR000757)
Glycoside hydrolase, family 16, active site (IPR008263)
Beta-glucanase (IPR008264)
Concanavalin A-like lectin/glucanases superfamily (IPR008985)
Xyloglucan endo-transglycosylase, C-terminal (IPR010713)
Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Xyloglucan endotransglucosylase/hydrolase (IPR016455)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:120.11,11.40,36.18,18.64,37.04,111.32,65.50,26.91
Arabidopsis thaliana homolog: AT4G14130.1
Automatic updates:
Name: BT090048 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-3B17 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251223 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max xyloglucan endotransglucosylase/hydrolase 2 (LOC547802), mRNA.
PubMed ID: 8115544 NCBI(pubmed)
Status: Known Variant
Name: NM_001289238 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max brassinosteroid-regulated protein BRU1-like (LOC100784191), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:53761141..53761743 (+ strand)
Length: 603
Type: five_prime_UTR
Position: Chr04:53761744..53762025 (+ strand)
Length: 282
Type: CDS
Position: Chr04:53762296..53762489 (+ strand)
Length: 194
Type: CDS
Position: Chr04:53762606..53762972 (+ strand)
Length: 367
Type: CDS
Position: Chr04:53762973..53763151 (+ strand)
Length: 179
Type: three_prime_UTR

>Vigan.04G433000.01 class=Sequence position=Chr04:53761141..53763151 (+ strand)
CTGAATACTG TCAGAACCTT TAAATTCATT AAACTCTCAA TAACTTTGCA ACAGATAAAT TGGAGGGTGA AGCATTTCTC
CTGCCACATG GCATCATCTC AGATTATTCA CAATGCATTA TTACAAGACC AATGGACAAG TAAAATACTA CTTTTTCCTC
TTATTCCTCT TTGATTCTTT CCGTGATACA GCATCCAGTT GGCATCCACC GCCTGAATTT TCTCATAATT TCGTTTTACT
TTCCAAATCA TACACTAAAA ATGGGACCCA GGCATATAAT ATATTATACA CACAAGCACA ATCATGATTT GGCTCTTCAC
TGAACTCATA ACATAACTCA AAAACACGAA TACTAGCGTA ATTAATAATC CAGCTTTCAA ACAAAAAGCT TCCAGCTTTC
AAAGCTTGCA AAGCTGTCAC CAGTAATCAA TTCTCACGCG TCCCATCATC CATTCCCACC ATACGCAACA CAATCCATAT
TCCAAGTCCT GTTTCCTTCA CCTGTCCCTT CTTTATCGCA TATATATATA TACACGCCTC CTTCCACCAC ATTCCTTCAC
ATCAAAACAC CAAACAAAAA GCTCTTCTTC CTCTTTCTCC AGCATGGCTT CTTCTACTGG TATTATGTTT TACGCCCTTC
TGCTAGGGCT GGTGGTGGCT ACCTCCATGG TGGCTAAATG TGCTGCTAAC TTCTACCAAG ACTTTGATCT CACATGGGGT
GACCACCGTG CTAAGATATT CGGCGGTGGT CAGCTTCTAT CTCTTTCGCT CGATAAAGTC TCTGGCTCTG GCTTCCGATC
CAAGAAAGAG TACTTATTTG GGAGGATCGA TATGCAGCTC AAACTCGTCG CTGGCAACTC TGCCGGCACT GTCACTGCTT
ACTACGTATG TTCATTCCTT TCTTCTCCCC CTCTCACTAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATTCTTCT TTCTTTTTCA AAAGCAACTT TAACATTGAG ACGTAACTCA
CTTTTAAATG ACACCATTAT TACATTTTTG GCATCAACCT TTCAAACGCA AGTTACGCAA CTGTTACTTT GTTTTTTAAT
CCATTAACGG TAGTGTTTTG TGTTTTGTGA TGCAGTTGTC ATCTCAGGGA CCAACCCATG ACGAGATTGA TTTTGAATTC
TTGGGAAACG TGAGTGGCGA CCCTTATATT CTCCACACAA ACGTGTTTAC CCAAGGCAAA GGAAACAGAG AGCAACAGTT
CTACCTCTGG TTCGACCCCA CCAGAAACTT CCACACTTAC TCCATCATCT GGAAGCCCCA ACACATCATG TGAGTAAAAA
CAAGATATTT ATGTTTTCTT CGTCTCTCGC TTTCCATGGT GTGTCTTTTC CCTTCGATAA CCGGCATTGA ATAAAACGAA
ACCGGTTCAT TTATCTGTTG TGCAGCTTCT TGGTGGACAA CATTCCCATA AGGGTGTTCA AGAATGCTGA GAGTGCCGGT
GTTCCTTTCC CGAAGAACCA ACCCATGAGA ATCTATTCTA GCCTGTGGAA TGCTGATGAC TGGGCAACTA GAGGTGGCTT
GGTGAAAACT GATTGGTCCA AGGCACCGTT TACAGCGTAC TACCGCAATT TCAAAGCCAC GGAGTTCTCG GGGTCTTCCA
ATTCATTCTC TGATGCTGCA TTGCAGAGCA CGGAGCTTGA CGCCTATGGC AGAAGAAGAC TTAGATGGGT TCAAAAGTAC
TTCATGATCT ATAACTACTG CAACGACCTT AAGCGATTCC CACAAGGCCT TCCTGCGGAG TGCAAACGCT GAGAAACAAA
CGAGTCTTTG TTTTTATTTG TAAAATATTT TATATTATTA TGTCTCGGTC TTTTGATTCT TTAATTTTGT GTCTTCTTCG
CTATTTTGCC TTTTTCTCTA AGTCATGCTT TATATATGAT ATTCATATTC AAAATAAATG AAATTCGTTT TACTACCTAC
CACTTTTGTT A

>Vigan.04G433000.01
CTGAATACTG TCAGAACCTT TAAATTCATT AAACTCTCAA TAACTTTGCA ACAGATAAAT TGGAGGGTGA AGCATTTCTC
CTGCCACATG GCATCATCTC AGATTATTCA CAATGCATTA TTACAAGACC AATGGACAAG TAAAATACTA CTTTTTCCTC
TTATTCCTCT TTGATTCTTT CCGTGATACA GCATCCAGTT GGCATCCACC GCCTGAATTT TCTCATAATT TCGTTTTACT
TTCCAAATCA TACACTAAAA ATGGGACCCA GGCATATAAT ATATTATACA CACAAGCACA ATCATGATTT GGCTCTTCAC
TGAACTCATA ACATAACTCA AAAACACGAA TACTAGCGTA ATTAATAATC CAGCTTTCAA ACAAAAAGCT TCCAGCTTTC
AAAGCTTGCA AAGCTGTCAC CAGTAATCAA TTCTCACGCG TCCCATCATC CATTCCCACC ATACGCAACA CAATCCATAT
TCCAAGTCCT GTTTCCTTCA CCTGTCCCTT CTTTATCGCA TATATATATA TACACGCCTC CTTCCACCAC ATTCCTTCAC
ATCAAAACAC CAAACAAAAA GCTCTTCTTC CTCTTTCTCC AGCATGGCTT CTTCTACTGG TATTATGTTT TACGCCCTTC
TGCTAGGGCT GGTGGTGGCT ACCTCCATGG TGGCTAAATG TGCTGCTAAC TTCTACCAAG ACTTTGATCT CACATGGGGT
GACCACCGTG CTAAGATATT CGGCGGTGGT CAGCTTCTAT CTCTTTCGCT CGATAAAGTC TCTGGCTCTG GCTTCCGATC
CAAGAAAGAG TACTTATTTG GGAGGATCGA TATGCAGCTC AAACTCGTCG CTGGCAACTC TGCCGGCACT GTCACTGCTT
ACTACTTGTC ATCTCAGGGA CCAACCCATG ACGAGATTGA TTTTGAATTC TTGGGAAACG TGAGTGGCGA CCCTTATATT
CTCCACACAA ACGTGTTTAC CCAAGGCAAA GGAAACAGAG AGCAACAGTT CTACCTCTGG TTCGACCCCA CCAGAAACTT
CCACACTTAC TCCATCATCT GGAAGCCCCA ACACATCATC TTCTTGGTGG ACAACATTCC CATAAGGGTG TTCAAGAATG
CTGAGAGTGC CGGTGTTCCT TTCCCGAAGA ACCAACCCAT GAGAATCTAT TCTAGCCTGT GGAATGCTGA TGACTGGGCA
ACTAGAGGTG GCTTGGTGAA AACTGATTGG TCCAAGGCAC CGTTTACAGC GTACTACCGC AATTTCAAAG CCACGGAGTT
CTCGGGGTCT TCCAATTCAT TCTCTGATGC TGCATTGCAG AGCACGGAGC TTGACGCCTA TGGCAGAAGA AGACTTAGAT
GGGTTCAAAA GTACTTCATG ATCTATAACT ACTGCAACGA CCTTAAGCGA TTCCCACAAG GCCTTCCTGC GGAGTGCAAA
CGCTGAGAAA CAAACGAGTC TTTGTTTTTA TTTGTAAAAT ATTTTATATT ATTATGTCTC GGTCTTTTGA TTCTTTAATT
TTGTGTCTTC TTCGCTATTT TGCCTTTTTC TCTAAGTCAT GCTTTATATA TGATATTCAT ATTCAAAATA AATGAAATTC
GTTTTACTAC CTACCACTTT TGTTA

>Vigan.04G433000.01
ATGGCTTCTT CTACTGGTAT TATGTTTTAC GCCCTTCTGC TAGGGCTGGT GGTGGCTACC TCCATGGTGG CTAAATGTGC
TGCTAACTTC TACCAAGACT TTGATCTCAC ATGGGGTGAC CACCGTGCTA AGATATTCGG CGGTGGTCAG CTTCTATCTC
TTTCGCTCGA TAAAGTCTCT GGCTCTGGCT TCCGATCCAA GAAAGAGTAC TTATTTGGGA GGATCGATAT GCAGCTCAAA
CTCGTCGCTG GCAACTCTGC CGGCACTGTC ACTGCTTACT ACTTGTCATC TCAGGGACCA ACCCATGACG AGATTGATTT
TGAATTCTTG GGAAACGTGA GTGGCGACCC TTATATTCTC CACACAAACG TGTTTACCCA AGGCAAAGGA AACAGAGAGC
AACAGTTCTA CCTCTGGTTC GACCCCACCA GAAACTTCCA CACTTACTCC ATCATCTGGA AGCCCCAACA CATCATCTTC
TTGGTGGACA ACATTCCCAT AAGGGTGTTC AAGAATGCTG AGAGTGCCGG TGTTCCTTTC CCGAAGAACC AACCCATGAG
AATCTATTCT AGCCTGTGGA ATGCTGATGA CTGGGCAACT AGAGGTGGCT TGGTGAAAAC TGATTGGTCC AAGGCACCGT
TTACAGCGTA CTACCGCAAT TTCAAAGCCA CGGAGTTCTC GGGGTCTTCC AATTCATTCT CTGATGCTGC ATTGCAGAGC
ACGGAGCTTG ACGCCTATGG CAGAAGAAGA CTTAGATGGG TTCAAAAGTA CTTCATGATC TATAACTACT GCAACGACCT
TAAGCGATTC CCACAAGGCC TTCCTGCGGA GTGCAAACGC TGA

>Vigan.04G433000.01
MASSTGIMFY ALLLGLVVAT SMVAKCAANF YQDFDLTWGD HRAKIFGGGQ LLSLSLDKVS GSGFRSKKEY LFGRIDMQLK
LVAGNSAGTV TAYYLSSQGP THDEIDFEFL GNVSGDPYIL HTNVFTQGKG NREQQFYLWF DPTRNFHTYS IIWKPQHIIF
LVDNIPIRVF KNAESAGVPF PKNQPMRIYS SLWNADDWAT RGGLVKTDWS KAPFTAYYRN FKATEFSGSS NSFSDAALQS
TELDAYGRRR LRWVQKYFMI YNYCNDLKRF PQGLPAECKR *