GBrowse Details

Vigan.04G425700.01

Basic Information:
Name: Vigan.04G425700.01
Multiple alignment
Variant Information
Position: Chr04:53306365..53310835 (+ strand)
Length: 4471
Functional Information:
Description: Similar to Uncharacterized protein. [A9UHK7, Glycine max]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: SANT/Myb domain (IPR001005)
Homeodomain-like (IPR009057)
Myb-like domain (IPR017877)
Trihelix transcription factor GT3 (IPR027759)
C2H2- zinc finger protein family (IPR027775)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.36,8.77,7.37,7.93,11.59,8.50,10.30,7.25
Arabidopsis thaliana homolog: AT1G13450.1
Automatic updates:
Name: NM_001249620 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GT-1 (LOC100137074), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:53306365..53306647 (+ strand)
Length: 283
Type: five_prime_UTR
Position: Chr04:53306648..53307182 (+ strand)
Length: 535
Type: CDS
Position: Chr04:53308232..53308270 (+ strand)
Length: 39
Type: CDS
Position: Chr04:53309311..53309442 (+ strand)
Length: 132
Type: CDS
Position: Chr04:53309724..53309948 (+ strand)
Length: 225
Type: CDS
Position: Chr04:53310366..53310568 (+ strand)
Length: 203
Type: CDS
Position: Chr04:53310569..53310835 (+ strand)
Length: 267
Type: three_prime_UTR

>Vigan.04G425700.01 class=Sequence position=Chr04:53306365..53310835 (+ strand)
ATAATATTGT CAAGAAGAGA CAGACACGTC CGTCTTCCTC ATCCCCTTGC TTTCCACCGC ATCCAAAAAA GCTTTTACTT
CACGCTGACA CACACAACGC AAAACCCCTA ACCTTCTTCA CTGTTTCACC ACTTCAAAAT TTCACCCCAA AACCCAATCC
CTAACTTTTA CAATTACAAT TACCATCGCC ATCACTCTCT CTTTCTCAAT TTTCCTTCTG CAATAGAATC CCTCAAACCA
AAAATTCACA CTCTCACACA TACAACAACC AACTTACCGA ACCATGTATT TGTCGGAGAA GCCGCGTCCA ATCGATTTCT
ACAAGGAGGA AGGCGCGCGC GACATGATGA TCGAGGTGGT CTCCAACGGT GAACTCCCGC CTCCGCCGCC GCACCACCCG
CCGCCGATGA TCCTCGGCGA GAGCAGTGGA GAAGACCCCG AGGTGGAGAT CAAGGCCCCC AAGAAACGGG CCGAGACGTG
GGTACAGGAC GAGACGCGCT CGCTCATTGG CCTCCGCCGC GAGATGGACG CGCTCTTCAA TACCTCCAAG TCCAACAAGC
ACCTGTGGGA ACAGATATCC GCCAAGATGA GAGAGAAGGG TTTTGATCGC TCTCCCACCA TGTGCACCGA TAAGTGGCGC
AACCTCCTGA AGGAGTTCAA GAAGGCCAAG CACCAGGACC GGGGAGGCAG TGGCTCTGCT AAGATGTCGT ATTACAAGGA
GATTGACGAG ATCCTCAGAG AGAGGAACAA GAACGTGCAG TACAAGAGCC CCACTCCTCC GCCAAAGGTT GATTCTTTCA
TGCAGTTTGC TGATAAAGGT AGTAGTTCAC TCGTTGTAAT TCGTCACTTC TGGGAACCGT TAGGTTAGAT TAGGGAATCC
TTCAATTGAA TTATGTTATG TTTGATTTTG TTGCACCAGG TTCAGATCAC TCTACGAATC TGACTTTTGA GGTGAATTAG
TGTGAGAGTT AAACTTGTTC TTACAATGTT GTTTCAGTAA TAGTTCTGTT GTCTAAAATT CTAGGGACTA AAAGGAGTAG
TTTCTAGTTT TAAGTTCTAA AACGTTCTAA AATGAATTAG AAAGCTCACG AGGAGGGACT AAATTGAATA GTTTCTAGGT
GCAAGAACTA AACTGTACTA ACCAAGCACT GGTGTTGGGG CTAAAATGAG GCCTGAAATA AGTTAGTCTG AAGATTCTTT
CGGAATATTG ATCACACAAT CTTTGTAAGC AAATTACTTG TGAAGCTGCG TCTCTAAGTC TGGCAGGGAG TGGGGATGTT
TGATATCTGA TGTGGATACT TTTTTGACGG TTTGTTTAAT TGAGATGGTG TAAGTGACAT TGATTAAAGC TGAACATTCT
GGAGTTTCCC AAATTTGACA AATTTTGTCT GGAAACCGAG ATACTTCATT ATCTTTTTCA AGCATTCTTG TTCGGGAATA
TTAGCTTGTG TGGGGAAAAA CGTAACTGGG GAAACCTAAG GCAACTGCTT AATGGATTGC ATTTTCAAAA ATCCAACAAA
TTTAATCCAA AATAATGGCA TTTTGGTCTA AAATTGCTGG CACGAGGTGA TTGATTTTTA TGTTTCTTTG TGAAGCATAG
ATTTGAAGGA GTAAAGAAGC TTTCAGTTTC CCTGTATAAG TTTAGTAAGT GTGATTAGAA ATCACGTTTA TTTCTTGGTT
GAAAAGCCTT ACCCTTAAGT CGAATATCTC TGTTTCACAT AGGACAGTAT AAATCTCGAC AATTTGAAAG TGGGGTTTAA
TTCCTCTCCA GTACTGTTAA ACTATCACTT TGGATATCTG TTGAGGTTAT AATTTCACCC ATCTCATCTT TAGGAACAAT
AATTTAATTG GTTGTCTTGC TCTACAGGTA TTGATGATAC TAGCATCTCT TTTGGACCTG TAGAAGGTAT GTCATCGTAA
TCCAGCTTTC AGCTGCCTAC GTACTCTGTA TTGTTGTTTA CTCGCGTCCT TCATCATTTT AAATTTCCAA AATGAATCAT
GTGAGGTTTT AATTCCTCGA GGCATTTTGG TTTTGACTTG ATTCTTATAC TGGTAAGTAG CTAATACACA CCACATCCGA
GTAACATAAT AATGGTGGAA TTTTAAAACA GTGTAAGAAA AAACCATGCT AATGTATGTA CATAGTCACA TGTATTGCAT
GGAAATTTAA CCAACACTAT AGACAACTTT TCAGCATTTT AATGCTTCTT TTCAGGTAAA TATTTAAAAA AATGATAGGA
AGAGCAACAT AAAGGGTGGA ATTTTACCTT AAACAGTTTG TTGAGATGAT AATTCAAATG CTGTACTCTT CAGTATAGTT
CTAGTTATCT TAATTTATTA GGAACTCTTT CTGCTAACGT GTGGCCATAT AATTATTTCT TCTCAATGTG GGAAAAATTA
TTCTTGTTGC ATAATGCTTA TCATTTATCA GTTTCACTTA ATTATAATGT CTAGTACAGT ACCCAAATAA TGTGCTGAAG
TACTCATACT ACTTCTTGCT ATGCATGACC AGATAAGGAG GCAATTGTAT TGGTGGGAGG AATTATTCAC GGGCATATTG
CCTAGCATTA TCATTTTTTC TATCATCTGG TGTCTACATT TTGCAGAATT TCAATGCCCA AAACTAGTAC TCTCAACATT
TTAGAATGAA GATTTTAGGG CATGTTCTCT TTGAGTAAAT AATGTTGCTT TGAGTGAAAA CAATTTTGTT TTTGTTTTAT
TTTATCTGTT TCCTGTACAA CTCTTTGAAA CCAGGAAACA AGTTGAAAAC AAGGTGACAA CTTTGTTACT AGAAATGAAA
ACGGGAAATG AAAATAGAAG TAAACAAGCC CTTAACATTT CAGGAGAGGG AGTCTCTTTT AAAATGAATA TGGACATGCA
TTTTATTTCC TTTACCATAA TTTTTTCTAT TTCATTTACC ATAATTCTCA AATACTTGCC ATATAGCTAC TGGAAGACCA
ACACTTAATC TTGAGAGAAG TTTGGATCAT GATGGACATC CTCTTGCCAT TACCACAGCT GATGCTGTTG CAGCTGGCGG
AGTCCCTCCT TGGAATTGGA GAGAGACTTC TGGAAATGGT AAGCTATGTA GGGCTTCATA GTCTGATGCA TGTTTGCTTT
CTCACCAATG AAAGAGAAAA TGACTGCAAA AATAAGAAGT TAATCATCGA GTCTTGGTAA ATGTACATTG TGACAGCAGT
TTTGGTTAAT TTTTGGAAAG TATTGTAGAA CCTGAAAAAC ATGGTAAAAT AAATTATTAT TTCATACCCC AAAATATGGA
ATCAATTATA TTCGGTGCCC CCGCCTCTTT AGCTTAATTG CTATCTTATT TGTGCAACCA ATTCTTCCTA CTTTGGCAGG
TGGAGAAAGT CAGTCATGTT GTGGAAGGGT TATATCAGTT AAATGGTGTG ATTATACAAG ACGAATAGGT ATTGACGGCA
CTCCAGAAGC CATCAAAGAA GCAATCAGAG CTGCTTTTAG GTTGAGAACT AAACGCACAT TTTGGTTGGA GGATGAGGAC
CAGATTATCC GAAGTATTGA CCGTGAAATG CCTATTGGAA GTTACACTCT TCACCTTGAT GAAGGTTAGA TTCACTTTAT
TCGTCTAATT ACTGTTGTGA TATGTACACA TTTAATGGTT TTATTTAATT TTTAATGTTG TGAAAACCGG ACTGGTCAAA
CCGGTAAACT AGTTTAAGAT CTGGTATACT AAAACCACAA AAGTGGTTTG CAATTGAACC AGTAAATAAT CGCTTCACAG
CTGGACAACA ATTTTTTTGA AAGGAAAAAA TCTTTCTCAA TGTTATTTTT ATTTTTTCTT AGAAATAACA TCTATAAAAT
ATTTGTCATT TTATTTTGCT TGTTATTTTT AAAGAATATG ATCATGTATG GTTGTCCCTT GAATATTATG GCATATTTGA
TTGTTAAAAT CTCACAAAGT ATTTTTTTAG GTTTTAGTAT TTTTAAGTTA CGATGTTATA TTTATCCAAT TATAATTGCA
GGAATGGCCA TTAAATTATG TCTCTATGAC GAGTCTGAGC ACCTTCCTGT GCATACTGAA GATAAGGTAT TTTACACTGA
AAATGATTAC CGTGATTTTC TGACCCGGCG GGGTTGGGTA TGTCTAAGAG AATTTGACGG ATATAGAAAT ATTGACAATT
TGGATGATCT TCGACCTGGT GCTATATATC GTGGTGTGAG TTGAAACTTT AAAGTAGATG GTATGATCAA ATTATCTGGA
GAACTATGGT GGGTCTGTTC AGGTTTTTGA TATATGTGCG ACACTAACCT GAAATTGTAT TAGTTTTACA TTTGATAACG
CTGTTTATAG TTTTTTGATA GGTAAATTAA CTAGCCCTTC TGCACAAAAA TCCGTTTCAA TCAATGCCGT TTACATGTCT
GTAAATATGC ATTTGCAGTG ACAACATATT ATTATTATTG TCTAGATTTT TTAATGGATC ATTTTCGTCA A

>Vigan.04G425700.01
ATAATATTGT CAAGAAGAGA CAGACACGTC CGTCTTCCTC ATCCCCTTGC TTTCCACCGC ATCCAAAAAA GCTTTTACTT
CACGCTGACA CACACAACGC AAAACCCCTA ACCTTCTTCA CTGTTTCACC ACTTCAAAAT TTCACCCCAA AACCCAATCC
CTAACTTTTA CAATTACAAT TACCATCGCC ATCACTCTCT CTTTCTCAAT TTTCCTTCTG CAATAGAATC CCTCAAACCA
AAAATTCACA CTCTCACACA TACAACAACC AACTTACCGA ACCATGTATT TGTCGGAGAA GCCGCGTCCA ATCGATTTCT
ACAAGGAGGA AGGCGCGCGC GACATGATGA TCGAGGTGGT CTCCAACGGT GAACTCCCGC CTCCGCCGCC GCACCACCCG
CCGCCGATGA TCCTCGGCGA GAGCAGTGGA GAAGACCCCG AGGTGGAGAT CAAGGCCCCC AAGAAACGGG CCGAGACGTG
GGTACAGGAC GAGACGCGCT CGCTCATTGG CCTCCGCCGC GAGATGGACG CGCTCTTCAA TACCTCCAAG TCCAACAAGC
ACCTGTGGGA ACAGATATCC GCCAAGATGA GAGAGAAGGG TTTTGATCGC TCTCCCACCA TGTGCACCGA TAAGTGGCGC
AACCTCCTGA AGGAGTTCAA GAAGGCCAAG CACCAGGACC GGGGAGGCAG TGGCTCTGCT AAGATGTCGT ATTACAAGGA
GATTGACGAG ATCCTCAGAG AGAGGAACAA GAACGTGCAG TACAAGAGCC CCACTCCTCC GCCAAAGGTT GATTCTTTCA
TGCAGTTTGC TGATAAAGGT ATTGATGATA CTAGCATCTC TTTTGGACCT GTAGAAGCTA CTGGAAGACC AACACTTAAT
CTTGAGAGAA GTTTGGATCA TGATGGACAT CCTCTTGCCA TTACCACAGC TGATGCTGTT GCAGCTGGCG GAGTCCCTCC
TTGGAATTGG AGAGAGACTT CTGGAAATGG TGGAGAAAGT CAGTCATGTT GTGGAAGGGT TATATCAGTT AAATGGTGTG
ATTATACAAG ACGAATAGGT ATTGACGGCA CTCCAGAAGC CATCAAAGAA GCAATCAGAG CTGCTTTTAG GTTGAGAACT
AAACGCACAT TTTGGTTGGA GGATGAGGAC CAGATTATCC GAAGTATTGA CCGTGAAATG CCTATTGGAA GTTACACTCT
TCACCTTGAT GAAGGAATGG CCATTAAATT ATGTCTCTAT GACGAGTCTG AGCACCTTCC TGTGCATACT GAAGATAAGG
TATTTTACAC TGAAAATGAT TACCGTGATT TTCTGACCCG GCGGGGTTGG GTATGTCTAA GAGAATTTGA CGGATATAGA
AATATTGACA ATTTGGATGA TCTTCGACCT GGTGCTATAT ATCGTGGTGT GAGTTGAAAC TTTAAAGTAG ATGGTATGAT
CAAATTATCT GGAGAACTAT GGTGGGTCTG TTCAGGTTTT TGATATATGT GCGACACTAA CCTGAAATTG TATTAGTTTT
ACATTTGATA ACGCTGTTTA TAGTTTTTTG ATAGGTAAAT TAACTAGCCC TTCTGCACAA AAATCCGTTT CAATCAATGC
CGTTTACATG TCTGTAAATA TGCATTTGCA GTGACAACAT ATTATTATTA TTGTCTAGAT TTTTTAATGG ATCATTTTCG
TCAA

>Vigan.04G425700.01
ATGTATTTGT CGGAGAAGCC GCGTCCAATC GATTTCTACA AGGAGGAAGG CGCGCGCGAC ATGATGATCG AGGTGGTCTC
CAACGGTGAA CTCCCGCCTC CGCCGCCGCA CCACCCGCCG CCGATGATCC TCGGCGAGAG CAGTGGAGAA GACCCCGAGG
TGGAGATCAA GGCCCCCAAG AAACGGGCCG AGACGTGGGT ACAGGACGAG ACGCGCTCGC TCATTGGCCT CCGCCGCGAG
ATGGACGCGC TCTTCAATAC CTCCAAGTCC AACAAGCACC TGTGGGAACA GATATCCGCC AAGATGAGAG AGAAGGGTTT
TGATCGCTCT CCCACCATGT GCACCGATAA GTGGCGCAAC CTCCTGAAGG AGTTCAAGAA GGCCAAGCAC CAGGACCGGG
GAGGCAGTGG CTCTGCTAAG ATGTCGTATT ACAAGGAGAT TGACGAGATC CTCAGAGAGA GGAACAAGAA CGTGCAGTAC
AAGAGCCCCA CTCCTCCGCC AAAGGTTGAT TCTTTCATGC AGTTTGCTGA TAAAGGTATT GATGATACTA GCATCTCTTT
TGGACCTGTA GAAGCTACTG GAAGACCAAC ACTTAATCTT GAGAGAAGTT TGGATCATGA TGGACATCCT CTTGCCATTA
CCACAGCTGA TGCTGTTGCA GCTGGCGGAG TCCCTCCTTG GAATTGGAGA GAGACTTCTG GAAATGGTGG AGAAAGTCAG
TCATGTTGTG GAAGGGTTAT ATCAGTTAAA TGGTGTGATT ATACAAGACG AATAGGTATT GACGGCACTC CAGAAGCCAT
CAAAGAAGCA ATCAGAGCTG CTTTTAGGTT GAGAACTAAA CGCACATTTT GGTTGGAGGA TGAGGACCAG ATTATCCGAA
GTATTGACCG TGAAATGCCT ATTGGAAGTT ACACTCTTCA CCTTGATGAA GGAATGGCCA TTAAATTATG TCTCTATGAC
GAGTCTGAGC ACCTTCCTGT GCATACTGAA GATAAGGTAT TTTACACTGA AAATGATTAC CGTGATTTTC TGACCCGGCG
GGGTTGGGTA TGTCTAAGAG AATTTGACGG ATATAGAAAT ATTGACAATT TGGATGATCT TCGACCTGGT GCTATATATC
GTGGTGTGAG TTGA

>Vigan.04G425700.01
MYLSEKPRPI DFYKEEGARD MMIEVVSNGE LPPPPPHHPP PMILGESSGE DPEVEIKAPK KRAETWVQDE TRSLIGLRRE
MDALFNTSKS NKHLWEQISA KMREKGFDRS PTMCTDKWRN LLKEFKKAKH QDRGGSGSAK MSYYKEIDEI LRERNKNVQY
KSPTPPPKVD SFMQFADKGI DDTSISFGPV EATGRPTLNL ERSLDHDGHP LAITTADAVA AGGVPPWNWR ETSGNGGESQ
SCCGRVISVK WCDYTRRIGI DGTPEAIKEA IRAAFRLRTK RTFWLEDEDQ IIRSIDREMP IGSYTLHLDE GMAIKLCLYD
ESEHLPVHTE DKVFYTENDY RDFLTRRGWV CLREFDGYRN IDNLDDLRPG AIYRGVS*