VIGGS:GBrowse

Vigan.04G425200.01

Basic Information:

Name:	Vigan.04G425200.01 Multiple alignment Variant Information
Position:	Chr04:53257443..53259069 (- strand)
Length:	1627

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LNC8, Glycine max]
InterPro:	Alpha crystallin/Hsp20 domain (IPR002068)
InterPro:	HSP20-like chaperone (IPR008978)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:150.91,122.06,67.59,192.10,0.31,11.63,2.00,17.76

Automatic updates:

Name:	NM_001317630 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative heat shock protein (LOC100811966), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:53257443..53257577 (- strand)
Length:	135
Type:	three_prime_UTR

Position:	Chr04:53257578..53258089 (- strand)
Length:	512
Type:	CDS

Position:	Chr04:53258480..53258678 (- strand)
Length:	199
Type:	CDS

Position:	Chr04:53258679..53259069 (- strand)
Length:	391
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.04G425200.01 class=Sequence position=Chr04:53257443..53259069 (- strand)
TCTTCATTGA GTGTAAACAG ACACGTAAGA ACCCGCGATT AAGATTGGTC TTGGAACACG AAGGGCTCTC ATTCAGCAGA
AAACGTGGTC AAAAGCTTAT CCAACAAGTT GGAATCTTGA AAGGTTCCAT CCTCTGTAAC ATGTCTGGTT CTGGAAAATT
CTGGAAAACG AAATGATACT CCCATTCAGT GCTCATTTCT CACGACCCCA CACCTATGAT GTCGCGTTTT CCAGAATTCT
CCACACCTCC TTCTTCAAAG TTCTATTCTA TATATATATA TTTCACAAAA AACCCTACCT TCTCCACACT TCCACCACTT
CATCAGATTA ACAACCTTAA TTTTTCTTCT GTTCTGCGGT CTCAACAGAC AGAACACAAC ACTCTTCAAA AATGGCACAC
GCTTTGTCCT CTAATCTGGC TCTTAACCTT CCTACATCGA GATATCTTCT TCACTCCAGA CCAACCCAGT TGAAGCCAGT
GAAGTTCATG GTCATGGGGG ATGCAAGAGA AAAGCTTGAC CACATCCCAA AACCCAACAA GAACCACCAT CCTCTTCCCA
AAAAGAAAGT TGCCCCTCCT GCACCCATAG GTACCCTATT CTTATAATTC CATTTTGTTT TCAAAAATTT ACTTTAGGAA
ATAAAAATTT TCAGAAACAT CTACCTAAAA TTTCAAAACT TTTATTAGAA AAATGTTAAA ATTCGAAATA AAGTCAATTT
ATGAATGCAA AAAAGTGAGG TTTTGTGGGT TAAGTTAAGT TTAACTCTAT TTCTTAACAT TAGAAATTAG AATCCTAATG
ATATTTATCG ACCTCAGTTT TGTAGTTTTG TGGTAGTGAG TTAACACATG AATTTCTTTC AAACCGTATA AATAATCGGT
TTTGTGGGTT AATTGTTTTA GTCTGAGTTA GCATTATTGT TGTTTCTGTA GTTGACACTG ATTGTGTGAC TATGTACATG
TGTTGATTGA ATAAAAACAG GGTTGTGGGA CAGGTTTCCT ACGGCAAGAA CAATGCAAGA GATGATGGAG ACGATGGAGA
GGATGATGGA GGACCCTTTT GCATTTAGCA CGCTTGAGTG GCCTTCATCA CCCTTACCGA GTGAGGGTGT GGGAGGGTAC
AGGAGAAGAG GAAGGGCACC ATGGGAGATC AAAGAGGGAG AGAATGAGTA CAAGATGAGG TTTGACATGC CTGGGATGAA
CAAAGAGGAT GTGAAAGTTT GGGTGGAGGA AAAGATGCTT GTGGTTAAAG CAGAAAAGGC ACCAAAGAAG AAAGAGATTG
TTCAACAGGA TCAACGGCCG AGGCAACCAG AAGAGGAAGA AGAAGAGGGA TGGTCTGCAA AGAGCTATGG CAGGTATAGC
AGTAGGATTG CTCTGCCCGA CAATGTGCAG TTTGAGAATA TTAAGGCTGA GGTTAAGGAT GGTGTTCTCT ACATAGCCAT
TCCCAAAGCT ATTACTAGTT ACTCCAACAT CCTAGATATC CAAGTTCAAT GATTCATGTT TCTGTCTTCT ATACTATACA
GAGTTTTTTG TTTCAACAAC AGTTAATTAT GTAGGTATCT ACCTAAGTTA TTTTAATTTC TTGTAATTTT CTTAATTTCA
TTTCAGAAAA TTACTCTGAT TTCCAAA

[show][hide][copy]TRANSCRIPT

>Vigan.04G425200.01
TCTTCATTGA GTGTAAACAG ACACGTAAGA ACCCGCGATT AAGATTGGTC TTGGAACACG AAGGGCTCTC ATTCAGCAGA
AAACGTGGTC AAAAGCTTAT CCAACAAGTT GGAATCTTGA AAGGTTCCAT CCTCTGTAAC ATGTCTGGTT CTGGAAAATT
CTGGAAAACG AAATGATACT CCCATTCAGT GCTCATTTCT CACGACCCCA CACCTATGAT GTCGCGTTTT CCAGAATTCT
CCACACCTCC TTCTTCAAAG TTCTATTCTA TATATATATA TTTCACAAAA AACCCTACCT TCTCCACACT TCCACCACTT
CATCAGATTA ACAACCTTAA TTTTTCTTCT GTTCTGCGGT CTCAACAGAC AGAACACAAC ACTCTTCAAA AATGGCACAC
GCTTTGTCCT CTAATCTGGC TCTTAACCTT CCTACATCGA GATATCTTCT TCACTCCAGA CCAACCCAGT TGAAGCCAGT
GAAGTTCATG GTCATGGGGG ATGCAAGAGA AAAGCTTGAC CACATCCCAA AACCCAACAA GAACCACCAT CCTCTTCCCA
AAAAGAAAGT TGCCCCTCCT GCACCCATAG GGTTGTGGGA CAGGTTTCCT ACGGCAAGAA CAATGCAAGA GATGATGGAG
ACGATGGAGA GGATGATGGA GGACCCTTTT GCATTTAGCA CGCTTGAGTG GCCTTCATCA CCCTTACCGA GTGAGGGTGT
GGGAGGGTAC AGGAGAAGAG GAAGGGCACC ATGGGAGATC AAAGAGGGAG AGAATGAGTA CAAGATGAGG TTTGACATGC
CTGGGATGAA CAAAGAGGAT GTGAAAGTTT GGGTGGAGGA AAAGATGCTT GTGGTTAAAG CAGAAAAGGC ACCAAAGAAG
AAAGAGATTG TTCAACAGGA TCAACGGCCG AGGCAACCAG AAGAGGAAGA AGAAGAGGGA TGGTCTGCAA AGAGCTATGG
CAGGTATAGC AGTAGGATTG CTCTGCCCGA CAATGTGCAG TTTGAGAATA TTAAGGCTGA GGTTAAGGAT GGTGTTCTCT
ACATAGCCAT TCCCAAAGCT ATTACTAGTT ACTCCAACAT CCTAGATATC CAAGTTCAAT GATTCATGTT TCTGTCTTCT
ATACTATACA GAGTTTTTTG TTTCAACAAC AGTTAATTAT GTAGGTATCT ACCTAAGTTA TTTTAATTTC TTGTAATTTT
CTTAATTTCA TTTCAGAAAA TTACTCTGAT TTCCAAA

[show][hide][copy]CDS

>Vigan.04G425200.01
ATGGCACACG CTTTGTCCTC TAATCTGGCT CTTAACCTTC CTACATCGAG ATATCTTCTT CACTCCAGAC CAACCCAGTT
GAAGCCAGTG AAGTTCATGG TCATGGGGGA TGCAAGAGAA AAGCTTGACC ACATCCCAAA ACCCAACAAG AACCACCATC
CTCTTCCCAA AAAGAAAGTT GCCCCTCCTG CACCCATAGG GTTGTGGGAC AGGTTTCCTA CGGCAAGAAC AATGCAAGAG
ATGATGGAGA CGATGGAGAG GATGATGGAG GACCCTTTTG CATTTAGCAC GCTTGAGTGG CCTTCATCAC CCTTACCGAG
TGAGGGTGTG GGAGGGTACA GGAGAAGAGG AAGGGCACCA TGGGAGATCA AAGAGGGAGA GAATGAGTAC AAGATGAGGT
TTGACATGCC TGGGATGAAC AAAGAGGATG TGAAAGTTTG GGTGGAGGAA AAGATGCTTG TGGTTAAAGC AGAAAAGGCA
CCAAAGAAGA AAGAGATTGT TCAACAGGAT CAACGGCCGA GGCAACCAGA AGAGGAAGAA GAAGAGGGAT GGTCTGCAAA
GAGCTATGGC AGGTATAGCA GTAGGATTGC TCTGCCCGAC AATGTGCAGT TTGAGAATAT TAAGGCTGAG GTTAAGGATG
GTGTTCTCTA CATAGCCATT CCCAAAGCTA TTACTAGTTA CTCCAACATC CTAGATATCC AAGTTCAATG A

[show][hide][copy]PROTEIN

>Vigan.04G425200.01
MAHALSSNLA LNLPTSRYLL HSRPTQLKPV KFMVMGDARE KLDHIPKPNK NHHPLPKKKV APPAPIGLWD RFPTARTMQE
MMETMERMME DPFAFSTLEW PSSPLPSEGV GGYRRRGRAP WEIKEGENEY KMRFDMPGMN KEDVKVWVEE KMLVVKAEKA
PKKKEIVQQD QRPRQPEEEE EEGWSAKSYG RYSSRIALPD NVQFENIKAE VKDGVLYIAI PKAITSYSNI LDIQVQ*