GBrowse Details

Vigan.04G413900.01

Basic Information:
Name: Vigan.04G413900.01
Multiple alignment
Variant Information
Position: Chr04:52354873..52357840 (+ strand)
Length: 2968
Functional Information:
Description: Similar to Uncharacterized protein. [I1LMW8, Glycine max]
InterPro: Amino acid transporter, transmembrane (IPR013057)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.52,6.98,19.28,4.38,4.46,18.90,1.91,8.76
Arabidopsis thaliana homolog: AT3G56200.1
Automatic updates:
Name: NM_001353940 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transmembrane amino acid transporter family protein (LOC100815694), mRNA.
PubMed ID: 23065905 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:52354873..52355042 (+ strand)
Length: 170
Type: five_prime_UTR
Position: Chr04:52355043..52355403 (+ strand)
Length: 361
Type: CDS
Position: Chr04:52356048..52356200 (+ strand)
Length: 153
Type: CDS
Position: Chr04:52356305..52356508 (+ strand)
Length: 204
Type: CDS
Position: Chr04:52356589..52357054 (+ strand)
Length: 466
Type: CDS
Position: Chr04:52357156..52357282 (+ strand)
Length: 127
Type: CDS
Position: Chr04:52357283..52357840 (+ strand)
Length: 558
Type: three_prime_UTR

>Vigan.04G413900.01 class=Sequence position=Chr04:52354873..52357840 (+ strand)
TTGACTTCTC AATAATAAAT TATGGGAGCA AAATCAACAT GAATGATGAT GATGCACGGC CTTTATAAAA GGAAAGGGGA
AGTGTGATCT TTGTGACAAA ACATAACCAT TCAAAGCCAC AACCCAACCT CCGGCTGTTC ATTATCCAAT CCGACAGTTT
CTTCGCCGCC ATGTCTCCGA CCGTGGGAGT CAGCGTCCCA CTATTGGGCG AGTCCAACGG AGCAGTGCAG CCGGCCTCCG
TCCCCGGTGC GGTGTTCAAC GTGGCGACGA GCATAGTCGG CGCCGGAATC ATGTCAATTC CGGCGATCAT AAAGGTTCTT
GGTGTGGTTC CCGCTATCGC TATGATTATT GTCGTGGCCG TGCTCGCGGA ACTCTCTGTC GAGTTCCTCA TGCGCTTCAC
GCACTCCGGC GAAACGACGA CGTACGCCGG CGTCATGAGG GAAGCGTTCG GGTCGCCGGG AGCGTTGGTC GCGCAAGCTT
GCGTCATCAT CACCAACGTC GGGGGCTTAA TTCTTTACCT GATCATCATC GGTAGCAGAA CCTTTCCCTT TGTTTTTATT
CCTTTTGAAA TTATGAAAGA AAAGGTGGAA ATGTGTAGAT TTTTTTAGAT TTTGGTTAGT TGTGCCTAAT ATGAATTTTG
CCGGGTTTTC GGTCACATGC ATTGTCTTTG GTAAAGTTTT GCTAGTAGTT TATTTATTTT TCTTTTTACT ATATTTATAT
ATCTATATAT ATCTATATAT CTATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATTA AACTAACCAG TTATTTTCAT TAATGTCTGG GCTTTAATTG TTTTCAAACA ATCGAACTTA AGATCTAGAT
TTTCTTCAAG TACTCGTAAT TTTCACATTA ATACAGATCA GCTACTCGTA TTTTATTTTA ATAAATTTAA TTTAGAAATT
TTGTATTCGA AATGTCTGAT GGATAAATGA GTGAACTTGG ATATCAATTT GGGGAATGTA CACCTTAGTT TTCGGTCGAT
GTAATGGATA GAAGAAAGAT GCAGAAAGGA AAAAGAAAGT GACTGTGGTA GGAAAACAAA GAGAGACATA GAATGAGAAT
ATAGTAAAAA GAAAATGATA GTTGAATTGT GATTATTGCC TTTCTTGAAC AACAGGGGAT GTGCTATCTG GAAAGCAAGA
TGGAGGTGAA GTGCATTTGG GTATTCTGCA ACAGTGGTTT GGTATTCATT GGTGGAATTC CAGGGAATTT GCTCTTCTCT
TCACTTTGGT CTTCGTCATG TTTCCATTGG TATTGTACAA ACGTGTAGGT CAGTGTTACC AATTTAATTC TTTGCACGAT
TTCTTGTATT TGGAATTGAA GAGGCTCGTT GAGTAACGTG TGTTTTTGCT TTTGGTGTTT TGGATCTGGT AGAGTCCTTG
AAGTACAGTT CTGCAGTGTC AACTCTTCTT GCAGTGGCAT TTGTTGGCAT ATGTTGTGGG TTGGCTATTT TTGCACTGGT
GCAAGGAAAA ACGCAGACTC CTAGATTGTT TCCTGGGTTG GACAACCAAA CCTCATTCTT TGATCTATTT ACTGCAGTTC
CCGTTGTTGT CACAGCTTTC ACATTTCATT TTAACGGTAA TGGACCCGAT TACTATGTTA ATTTTTGAAG GGCATGCCTA
GAAAATTTCT GTGCTGATGA TTGATCTTTC TTGCAGTGCA TCCAATTGGG TTTGAGTTTG CCAAGCCATC TCAAATGACA
ACAGCAGTTC GATTAGCATT ATTGCTTTGT ACTGTGATCT ACATTACAGT AGGCCTATTT GGGTACCTAT TATTTGGGGA
TTCAACACAA TCAGACATTC TCATCAATTT TGACCAGACT AATGATTCTG TGGTTGGTTC CTTGTTCAAT ACTTTGATCC
GTGTAAGCTA TGCGCTCCAC ATCATGCTGG TGTTTCCTCT CTTGAACTTC TCATTGAGAT CCAACATAGA TGAAGTTCTC
TTCCCCAATA AGCCTATGCT AGCCACAGAC AACAAAAGAT TCATGATCCT CACTGTGGTG CTGCTTGTAT TCTCCTACCT
CGCTGCTATA GCAATCCCAG ATATTTGGTA CTTCTTTCAA TTTCTTGGAT CAACATCGGC AGTGTGCCTT GCCTTCATTT
TCCCTGGCTG TATTGTTTTA AGGTAATCTA TCATTTAACT TCTGATTAAG TTGATCCAAA TTAAAAATTA CACTGGACAA
ATATGTAAAC CAGTGTCTTA TTTTTCTTTG TTACTAATTT CAGGGATGCA TGTGGTATAG CAACGAAAAG GGATAAAATT
ATTGCACTGA TAATGATTAT ACTGGCCGTG GTGACAAGTG TGCTTGCCAT TTCCACCAAC ATATATAATG CTTTTAGTAG
CAAGTCATAA AAGCCGGTTC TCTCATTTTC TCCCCTAATA TTGTTTTGTT TTTTAATTTT TATAGAAAAA AAATTAAGTG
GTGAGAGTGG GTGTGGCTGG GGAGAAAGAC AATTGTAGGG GCATTTGAAT GCTGTGGCGA TTGGGTTACT TTTGTATCTT
TGATGCCTTT GTTGTTTGTC ATAGAATTCC TGTATGATAA TGATGTATTT TGGAACAGCA TTGCTTTGTA AATTAGCTTA
TATTATTAAA GAAATGGGAT CCAAAGGTCC ACCAGATTGT GCCGTGCAAG GATGCTAAGA TCGATGATCT CTTGTTGGGG
AACTGTTCTG AATGTCTCAG TGACCAACAT TTGGAACAAT GTTAAACTTT TTCAGTGATG TAACAAGCCC TTTCACTATC
ATCTCTCTCG CTGCCGTGTC ATACTCATCA AGAGACCAGA GAGGGAAGGC TGTAGAATAA CGCGTATCCA AAATAAAAAT
AATAAATATT TGGATAATAT GCCATAATAT ATACACATGG AAAATGCAGA GCAAATAAAT TATGATTAAA TAAAAAAATG
TTATAAAA

>Vigan.04G413900.01
TTGACTTCTC AATAATAAAT TATGGGAGCA AAATCAACAT GAATGATGAT GATGCACGGC CTTTATAAAA GGAAAGGGGA
AGTGTGATCT TTGTGACAAA ACATAACCAT TCAAAGCCAC AACCCAACCT CCGGCTGTTC ATTATCCAAT CCGACAGTTT
CTTCGCCGCC ATGTCTCCGA CCGTGGGAGT CAGCGTCCCA CTATTGGGCG AGTCCAACGG AGCAGTGCAG CCGGCCTCCG
TCCCCGGTGC GGTGTTCAAC GTGGCGACGA GCATAGTCGG CGCCGGAATC ATGTCAATTC CGGCGATCAT AAAGGTTCTT
GGTGTGGTTC CCGCTATCGC TATGATTATT GTCGTGGCCG TGCTCGCGGA ACTCTCTGTC GAGTTCCTCA TGCGCTTCAC
GCACTCCGGC GAAACGACGA CGTACGCCGG CGTCATGAGG GAAGCGTTCG GGTCGCCGGG AGCGTTGGTC GCGCAAGCTT
GCGTCATCAT CACCAACGTC GGGGGCTTAA TTCTTTACCT GATCATCATC GGGGATGTGC TATCTGGAAA GCAAGATGGA
GGTGAAGTGC ATTTGGGTAT TCTGCAACAG TGGTTTGGTA TTCATTGGTG GAATTCCAGG GAATTTGCTC TTCTCTTCAC
TTTGGTCTTC GTCATGTTTC CATTGGTATT GTACAAACGT GTAGAGTCCT TGAAGTACAG TTCTGCAGTG TCAACTCTTC
TTGCAGTGGC ATTTGTTGGC ATATGTTGTG GGTTGGCTAT TTTTGCACTG GTGCAAGGAA AAACGCAGAC TCCTAGATTG
TTTCCTGGGT TGGACAACCA AACCTCATTC TTTGATCTAT TTACTGCAGT TCCCGTTGTT GTCACAGCTT TCACATTTCA
TTTTAACGTG CATCCAATTG GGTTTGAGTT TGCCAAGCCA TCTCAAATGA CAACAGCAGT TCGATTAGCA TTATTGCTTT
GTACTGTGAT CTACATTACA GTAGGCCTAT TTGGGTACCT ATTATTTGGG GATTCAACAC AATCAGACAT TCTCATCAAT
TTTGACCAGA CTAATGATTC TGTGGTTGGT TCCTTGTTCA ATACTTTGAT CCGTGTAAGC TATGCGCTCC ACATCATGCT
GGTGTTTCCT CTCTTGAACT TCTCATTGAG ATCCAACATA GATGAAGTTC TCTTCCCCAA TAAGCCTATG CTAGCCACAG
ACAACAAAAG ATTCATGATC CTCACTGTGG TGCTGCTTGT ATTCTCCTAC CTCGCTGCTA TAGCAATCCC AGATATTTGG
TACTTCTTTC AATTTCTTGG ATCAACATCG GCAGTGTGCC TTGCCTTCAT TTTCCCTGGC TGTATTGTTT TAAGGGATGC
ATGTGGTATA GCAACGAAAA GGGATAAAAT TATTGCACTG ATAATGATTA TACTGGCCGT GGTGACAAGT GTGCTTGCCA
TTTCCACCAA CATATATAAT GCTTTTAGTA GCAAGTCATA AAAGCCGGTT CTCTCATTTT CTCCCCTAAT ATTGTTTTGT
TTTTTAATTT TTATAGAAAA AAAATTAAGT GGTGAGAGTG GGTGTGGCTG GGGAGAAAGA CAATTGTAGG GGCATTTGAA
TGCTGTGGCG ATTGGGTTAC TTTTGTATCT TTGATGCCTT TGTTGTTTGT CATAGAATTC CTGTATGATA ATGATGTATT
TTGGAACAGC ATTGCTTTGT AAATTAGCTT ATATTATTAA AGAAATGGGA TCCAAAGGTC CACCAGATTG TGCCGTGCAA
GGATGCTAAG ATCGATGATC TCTTGTTGGG GAACTGTTCT GAATGTCTCA GTGACCAACA TTTGGAACAA TGTTAAACTT
TTTCAGTGAT GTAACAAGCC CTTTCACTAT CATCTCTCTC GCTGCCGTGT CATACTCATC AAGAGACCAG AGAGGGAAGG
CTGTAGAATA ACGCGTATCC AAAATAAAAA TAATAAATAT TTGGATAATA TGCCATAATA TATACACATG GAAAATGCAG
AGCAAATAAA TTATGATTAA ATAAAAAAAT GTTATAAAA

>Vigan.04G413900.01
ATGTCTCCGA CCGTGGGAGT CAGCGTCCCA CTATTGGGCG AGTCCAACGG AGCAGTGCAG CCGGCCTCCG TCCCCGGTGC
GGTGTTCAAC GTGGCGACGA GCATAGTCGG CGCCGGAATC ATGTCAATTC CGGCGATCAT AAAGGTTCTT GGTGTGGTTC
CCGCTATCGC TATGATTATT GTCGTGGCCG TGCTCGCGGA ACTCTCTGTC GAGTTCCTCA TGCGCTTCAC GCACTCCGGC
GAAACGACGA CGTACGCCGG CGTCATGAGG GAAGCGTTCG GGTCGCCGGG AGCGTTGGTC GCGCAAGCTT GCGTCATCAT
CACCAACGTC GGGGGCTTAA TTCTTTACCT GATCATCATC GGGGATGTGC TATCTGGAAA GCAAGATGGA GGTGAAGTGC
ATTTGGGTAT TCTGCAACAG TGGTTTGGTA TTCATTGGTG GAATTCCAGG GAATTTGCTC TTCTCTTCAC TTTGGTCTTC
GTCATGTTTC CATTGGTATT GTACAAACGT GTAGAGTCCT TGAAGTACAG TTCTGCAGTG TCAACTCTTC TTGCAGTGGC
ATTTGTTGGC ATATGTTGTG GGTTGGCTAT TTTTGCACTG GTGCAAGGAA AAACGCAGAC TCCTAGATTG TTTCCTGGGT
TGGACAACCA AACCTCATTC TTTGATCTAT TTACTGCAGT TCCCGTTGTT GTCACAGCTT TCACATTTCA TTTTAACGTG
CATCCAATTG GGTTTGAGTT TGCCAAGCCA TCTCAAATGA CAACAGCAGT TCGATTAGCA TTATTGCTTT GTACTGTGAT
CTACATTACA GTAGGCCTAT TTGGGTACCT ATTATTTGGG GATTCAACAC AATCAGACAT TCTCATCAAT TTTGACCAGA
CTAATGATTC TGTGGTTGGT TCCTTGTTCA ATACTTTGAT CCGTGTAAGC TATGCGCTCC ACATCATGCT GGTGTTTCCT
CTCTTGAACT TCTCATTGAG ATCCAACATA GATGAAGTTC TCTTCCCCAA TAAGCCTATG CTAGCCACAG ACAACAAAAG
ATTCATGATC CTCACTGTGG TGCTGCTTGT ATTCTCCTAC CTCGCTGCTA TAGCAATCCC AGATATTTGG TACTTCTTTC
AATTTCTTGG ATCAACATCG GCAGTGTGCC TTGCCTTCAT TTTCCCTGGC TGTATTGTTT TAAGGGATGC ATGTGGTATA
GCAACGAAAA GGGATAAAAT TATTGCACTG ATAATGATTA TACTGGCCGT GGTGACAAGT GTGCTTGCCA TTTCCACCAA
CATATATAAT GCTTTTAGTA GCAAGTCATA A

>Vigan.04G413900.01
MSPTVGVSVP LLGESNGAVQ PASVPGAVFN VATSIVGAGI MSIPAIIKVL GVVPAIAMII VVAVLAELSV EFLMRFTHSG
ETTTYAGVMR EAFGSPGALV AQACVIITNV GGLILYLIII GDVLSGKQDG GEVHLGILQQ WFGIHWWNSR EFALLFTLVF
VMFPLVLYKR VESLKYSSAV STLLAVAFVG ICCGLAIFAL VQGKTQTPRL FPGLDNQTSF FDLFTAVPVV VTAFTFHFNV
HPIGFEFAKP SQMTTAVRLA LLLCTVIYIT VGLFGYLLFG DSTQSDILIN FDQTNDSVVG SLFNTLIRVS YALHIMLVFP
LLNFSLRSNI DEVLFPNKPM LATDNKRFMI LTVVLLVFSY LAAIAIPDIW YFFQFLGSTS AVCLAFIFPG CIVLRDACGI
ATKRDKIIAL IMIILAVVTS VLAISTNIYN AFSSKS*