GBrowse Details

Vigan.04G411900.01

Basic Information:
Name: Vigan.04G411900.01
Multiple alignment
Variant Information
Position: Chr04:52175709..52176846 (+ strand)
Length: 1138
Functional Information:
Description: Similar to Uncharacterized protein. [I1MYZ7, Glycine max]
InterPro: Lateral organ boundaries, LOB (IPR004883)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.03,0.00,8.48,0.00,3.27,0 .02
Automatic updates:
Name: NM_001353963 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LBD domain-containing transcription factor (LBD9), mRNA.
PubMed ID: 28464070 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:52175709..52175943 (+ strand)
Length: 235
Type: five_prime_UTR
Position: Chr04:52175944..52176168 (+ strand)
Length: 225
Type: CDS
Position: Chr04:52176409..52176750 (+ strand)
Length: 342
Type: CDS
Position: Chr04:52176751..52176846 (+ strand)
Length: 96
Type: three_prime_UTR

>Vigan.04G411900.01 class=Sequence position=Chr04:52175709..52176846 (+ strand)
TAAAATTACA CATAACCTTG CCTGAGGAAA TTAAATAACC CAACCCATTA GTTTATCTGA TAAAAAAAGA GTAATGTTTA
GGAGCTGAGT CTGATTGATA CTTGAAAGTG ATACTCAAAC TGTTGCACAA AAAGCTAGGG ACTGGCCTCA AACGGTGTTG
GCCATTATAA ATACACCCTC CCTCTCTTTC ATTCTGTCAA GCTCTGTTCC TAACTTTCTA TTATTCTTCT TTATTATGCT
TTTAAGCTTT TACTCCCAAA CCAAACAAGA AATTTTGCAG CTACCCTTTT TCTCCCGTAA TCAAATGGCT GGGAATTCTC
CATGTGCTTC ATGCAAGCTT CTCAGACGCA GGTGTACCAA GGACTGCATC TTTGCTCCTT ATTTCCCTTC CAATGACCCT
CAAAAGTTCG CCTTAGTTCA CAAGGTTTTT GGCGCTAGCA ATGTTAGCAA AATGCTGCAG GTATCTCACA CAGTACCTAT
GCCTCCTCAC TTTTTCTTAT TATCATTATG AAAAAGGGAG ATATTTGGAT TCGACTTTAG CTTCTTGTGT TTGATAACTT
TTTGGTTCAA GTTAGTTTTT TTCTTCTTGT ACTGATGAAA ATGTCATACC CACATGTCAT ATAATCAAAA TAGTATGTAT
TAGCTTTTGA AGTGGAATTA AATTCATTGT CAGATTCTGA AATGTATGTT AATGGTTCAG GAACTTCCTA TTGAGCAGAG
AGCAGATGCT GTGAGTAGTT TGGTGTACGA AGCACATGCA AGAGTTCGGG ACCCTGTGTA TGGCTGTGTT GGGGCCATAT
CCTATTTACA AAACCAGGTT TCTGAGCTTC AAATGCAGCT TGCAGTGGCT CAAGCAGAGA TACTCTGCAT CCAGATGCAA
CAGGAGCCAG TGATGCCAAA TCCAGAAATG GAAAACCCAG ATCAGAAATC TTACCTTCTC CAGAATGAAC TCCCTCAGTT
TCTCAACTAT GCCTCTTCTA GCAATGTAAT TTATGATGCT GTCTCAAGAG ACAACATTTA TGGACATGAT ATGGTTTCCT
GAATTCAAAA GCTTTTGCTG TTCTTTCTTC CTTACAAACA TTGTTTTTCA CTGTTTTAAT CGCTCAAAGT GTATAGTCTT
GTGATTTTTT AAGTTAAG

>Vigan.04G411900.01
TAAAATTACA CATAACCTTG CCTGAGGAAA TTAAATAACC CAACCCATTA GTTTATCTGA TAAAAAAAGA GTAATGTTTA
GGAGCTGAGT CTGATTGATA CTTGAAAGTG ATACTCAAAC TGTTGCACAA AAAGCTAGGG ACTGGCCTCA AACGGTGTTG
GCCATTATAA ATACACCCTC CCTCTCTTTC ATTCTGTCAA GCTCTGTTCC TAACTTTCTA TTATTCTTCT TTATTATGCT
TTTAAGCTTT TACTCCCAAA CCAAACAAGA AATTTTGCAG CTACCCTTTT TCTCCCGTAA TCAAATGGCT GGGAATTCTC
CATGTGCTTC ATGCAAGCTT CTCAGACGCA GGTGTACCAA GGACTGCATC TTTGCTCCTT ATTTCCCTTC CAATGACCCT
CAAAAGTTCG CCTTAGTTCA CAAGGTTTTT GGCGCTAGCA ATGTTAGCAA AATGCTGCAG GAACTTCCTA TTGAGCAGAG
AGCAGATGCT GTGAGTAGTT TGGTGTACGA AGCACATGCA AGAGTTCGGG ACCCTGTGTA TGGCTGTGTT GGGGCCATAT
CCTATTTACA AAACCAGGTT TCTGAGCTTC AAATGCAGCT TGCAGTGGCT CAAGCAGAGA TACTCTGCAT CCAGATGCAA
CAGGAGCCAG TGATGCCAAA TCCAGAAATG GAAAACCCAG ATCAGAAATC TTACCTTCTC CAGAATGAAC TCCCTCAGTT
TCTCAACTAT GCCTCTTCTA GCAATGTAAT TTATGATGCT GTCTCAAGAG ACAACATTTA TGGACATGAT ATGGTTTCCT
GAATTCAAAA GCTTTTGCTG TTCTTTCTTC CTTACAAACA TTGTTTTTCA CTGTTTTAAT CGCTCAAAGT GTATAGTCTT
GTGATTTTTT AAGTTAAG

>Vigan.04G411900.01
ATGCTTTTAA GCTTTTACTC CCAAACCAAA CAAGAAATTT TGCAGCTACC CTTTTTCTCC CGTAATCAAA TGGCTGGGAA
TTCTCCATGT GCTTCATGCA AGCTTCTCAG ACGCAGGTGT ACCAAGGACT GCATCTTTGC TCCTTATTTC CCTTCCAATG
ACCCTCAAAA GTTCGCCTTA GTTCACAAGG TTTTTGGCGC TAGCAATGTT AGCAAAATGC TGCAGGAACT TCCTATTGAG
CAGAGAGCAG ATGCTGTGAG TAGTTTGGTG TACGAAGCAC ATGCAAGAGT TCGGGACCCT GTGTATGGCT GTGTTGGGGC
CATATCCTAT TTACAAAACC AGGTTTCTGA GCTTCAAATG CAGCTTGCAG TGGCTCAAGC AGAGATACTC TGCATCCAGA
TGCAACAGGA GCCAGTGATG CCAAATCCAG AAATGGAAAA CCCAGATCAG AAATCTTACC TTCTCCAGAA TGAACTCCCT
CAGTTTCTCA ACTATGCCTC TTCTAGCAAT GTAATTTATG ATGCTGTCTC AAGAGACAAC ATTTATGGAC ATGATATGGT
TTCCTGA

>Vigan.04G411900.01
MLLSFYSQTK QEILQLPFFS RNQMAGNSPC ASCKLLRRRC TKDCIFAPYF PSNDPQKFAL VHKVFGASNV SKMLQELPIE
QRADAVSSLV YEAHARVRDP VYGCVGAISY LQNQVSELQM QLAVAQAEIL CIQMQQEPVM PNPEMENPDQ KSYLLQNELP
QFLNYASSSN VIYDAVSRDN IYGHDMVS*