GBrowse Details

Vigan.04G410400.01

Basic Information:
Name: Vigan.04G410400.01
Multiple alignment
Variant Information
Position: Chr04:52060559..52062926 (+ strand)
Length: 2368
Functional Information:
Description: Similar to Uncharacterized protein. [I1MZ11, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.08,9.64,2.34,0.47,7.00,3.04,21.47
Arabidopsis thaliana homolog: AT2G40200.1
Automatic updates:
Name: NM_001248857 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305722 (LOC100305722), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:52060559..52061185 (+ strand)
Length: 627
Type: five_prime_UTR
Position: Chr04:52061186..52061530 (+ strand)
Length: 345
Type: CDS
Position: Chr04:52061827..52062300 (+ strand)
Length: 474
Type: CDS
Position: Chr04:52062301..52062926 (+ strand)
Length: 626
Type: three_prime_UTR

>Vigan.04G410400.01 class=Sequence position=Chr04:52060559..52062926 (+ strand)
GACTGACTTT ATTTCAGATA ACATCTAGGT AAATGTTATG AAAATAATAC AAATGATTCT TCTTCTATCG TTTAAGTATA
CGTGCACTGC TATTTTATAT GAAAAAGCAA TTAATCTGAA GTAGTCATGT TTGGCACAAA AGTTCAAGAT AAGTAAACCA
ACTCGAGTTC TTATTCGATA GGATCTACGC TAAACACCAA GGGAGACCAA ACAGCTATAA TTATCGGTAG ATCAGATAAA
ACACTTTCTG GTCTAATAAA AATAAGACAA TGAGTCTCTG ATCATCATCC ACTACATCAA CTACTGACTA CGTAACAGTG
TTCCCCCAAA TCTATTTGCC AGATACTACT CATGCATACC ATTTCATTTC TCATTCAAAT ACGAATAATA TTAGCTTAGT
AGGTCAGGTC ACCTCTTTCT TATTCTTTTA CTCTTCATTT CCCCTCCTTC AAAAGTCCAA GTTCGTTAGA TTTAGCGAAG
GGAAAAATTT TCTTGTTGAA GTGACTGACA GGTACAGCCA AAATCGATTA TCATTTTGAC CAATGAATGG GTATTGCTTA
TCACAGCAGT CACCATCAAG ATAAGAAGAT GATCGACCAT TATTAGTGCA GCAAACAGTA ACTATGGATG GGAGATAAAA
GGCTCAGAAA TCATGGAAGA AACTTTAGAA TGGTTTCCAT TGTGACTATG GAAAACTACT ATGATTCTGG CTGGCACATG
AGCACCAGCT GGGCTCAATG CAGTGATCAT TCTTCTTCCT TTGCAGTTCC TACACAAATA CTTCCTCATG CCACTGACTC
TGCCTCTCTT CAATTTGGTG AGTTCCACTC ATGGCCACTT CCCATTGAAG GGGCCGAAGA AGAGAGAGCA ATGAGTGCTT
CCAAGAGCCA CAGCCAAGCT GAGAAAAGGC GCAGAGACAG AATCAATGCA CAGCTTGCAA CTCTCAGAAA ACTTATTCCC
AAATCCGATA AGGTAAACCA ATTTAATGCA CAAGTCTCTC TTTTTCAGTT TTCATGAGTG GCATACTTTA GTAGTACTAT
GAATTACGAA CAATAAGAGA ATAGCTTAGA TTTTGTTCCT GGCATCACAC TGGATAATGA ATGGATTATG AAATATATGT
GGCATGGTAT GCTTAGCAAA GTTATAAAAG GATTTCAATT CCACTTCCAC TTCATCAGGT CAAAAAAAGA ATATTGAACA
AAGCTTAATT ATACAGAGGG AAACATATTT TGCCAAACAT GCTAATATTA AGATTTGGGT ACTTGCAGAT GGACAAGGCA
GCTTTACTAG GGAGTGTGAT AGACCATGTC AAAGATCTAA AGAGAAAAAC CATGGATGTT AGCAGAGCTT TCACAGTTCC
AACTGAAATT GATGAAGTAT CAATTGACTG TGACCATGTA GAAGATGAAA GCTGCACTAA AGTGAACAAA TTGAAGGAGA
ATATTGTGAT CAAAGCTTCT GTTTGCTGCG ATGATCGACC AGAACTGTTC CCTGAACTCA TCCAAGTTCT CAAGGGCTTG
AGACTGACGG CAGTTAAAGC TGACATAGCC AGTGTAGGTG GCCGGATCAA AAGCATATTG GTGCTTTGTT CTAAGGATAG
TGAAGAGGGT GTTTGCCTCA CCACTCTCAA ACAGTCCCTC AAATCTGCTG TCACCAAAAT AGCTTCATCA TCCATGACAT
CTAATTGCCC CACCAGAAGT AAGAGGCAGA GATTCTTCTT GCCTTCTCGT TGCCTACAGT AATTTAATTA TATATTGTAA
AATCATTTTC ATTTGCCCCT AAGGGTCATT TCAGTGGGGC AATTATTTGC TTTATTTTTC AATATTTATA TACGGATAAG
ATATATAGCT TTTCCATTAG GAAGATGAAA TCATGAAATA TTAGTTCTGT GCCACCGATT AAACTAAAGT TAAAGAGTGA
GAAACTAAAT CAGAGGGAAT AATGTGTAAA AGGTTAAGTG CAGAAAACGG CGTGTGGCCT CCTCCTGCAT CAGGAATAGA
AAAGATGCAA ATTGATTTAC CTATCATTCA ATTAATAGAA TGAGTGGATT AGTAAAAGGG TGAATAACGT AGCAAGAGAA
AAAGAAAGTA AGAGAACAGA GGAAAAGCAA GCGATCATTG AGTTGCTCGT TAATTCTTAG CAGACAAATG TTAGTGTTAA
ATCACTTCAT GTTTGACTTA AAGAATTAGA TGTGATCAAT GCATTCAGAA AATATTGGCA CGTCCACTCA AGTAGTTTTC
ATCTCCTCTA TCACAACACC AGATATTTCC TTTGTTAATT AATGAGGCCA ATACTGAAAA ACTTTCATGT TGTGTAAAAA
CAATATGATA TTTCTTTAAA ATGGTTAATG TGCCTTTTTT CTCATTTA

>Vigan.04G410400.01
GACTGACTTT ATTTCAGATA ACATCTAGGT AAATGTTATG AAAATAATAC AAATGATTCT TCTTCTATCG TTTAAGTATA
CGTGCACTGC TATTTTATAT GAAAAAGCAA TTAATCTGAA GTAGTCATGT TTGGCACAAA AGTTCAAGAT AAGTAAACCA
ACTCGAGTTC TTATTCGATA GGATCTACGC TAAACACCAA GGGAGACCAA ACAGCTATAA TTATCGGTAG ATCAGATAAA
ACACTTTCTG GTCTAATAAA AATAAGACAA TGAGTCTCTG ATCATCATCC ACTACATCAA CTACTGACTA CGTAACAGTG
TTCCCCCAAA TCTATTTGCC AGATACTACT CATGCATACC ATTTCATTTC TCATTCAAAT ACGAATAATA TTAGCTTAGT
AGGTCAGGTC ACCTCTTTCT TATTCTTTTA CTCTTCATTT CCCCTCCTTC AAAAGTCCAA GTTCGTTAGA TTTAGCGAAG
GGAAAAATTT TCTTGTTGAA GTGACTGACA GGTACAGCCA AAATCGATTA TCATTTTGAC CAATGAATGG GTATTGCTTA
TCACAGCAGT CACCATCAAG ATAAGAAGAT GATCGACCAT TATTAGTGCA GCAAACAGTA ACTATGGATG GGAGATAAAA
GGCTCAGAAA TCATGGAAGA AACTTTAGAA TGGTTTCCAT TGTGACTATG GAAAACTACT ATGATTCTGG CTGGCACATG
AGCACCAGCT GGGCTCAATG CAGTGATCAT TCTTCTTCCT TTGCAGTTCC TACACAAATA CTTCCTCATG CCACTGACTC
TGCCTCTCTT CAATTTGGTG AGTTCCACTC ATGGCCACTT CCCATTGAAG GGGCCGAAGA AGAGAGAGCA ATGAGTGCTT
CCAAGAGCCA CAGCCAAGCT GAGAAAAGGC GCAGAGACAG AATCAATGCA CAGCTTGCAA CTCTCAGAAA ACTTATTCCC
AAATCCGATA AGATGGACAA GGCAGCTTTA CTAGGGAGTG TGATAGACCA TGTCAAAGAT CTAAAGAGAA AAACCATGGA
TGTTAGCAGA GCTTTCACAG TTCCAACTGA AATTGATGAA GTATCAATTG ACTGTGACCA TGTAGAAGAT GAAAGCTGCA
CTAAAGTGAA CAAATTGAAG GAGAATATTG TGATCAAAGC TTCTGTTTGC TGCGATGATC GACCAGAACT GTTCCCTGAA
CTCATCCAAG TTCTCAAGGG CTTGAGACTG ACGGCAGTTA AAGCTGACAT AGCCAGTGTA GGTGGCCGGA TCAAAAGCAT
ATTGGTGCTT TGTTCTAAGG ATAGTGAAGA GGGTGTTTGC CTCACCACTC TCAAACAGTC CCTCAAATCT GCTGTCACCA
AAATAGCTTC ATCATCCATG ACATCTAATT GCCCCACCAG AAGTAAGAGG CAGAGATTCT TCTTGCCTTC TCGTTGCCTA
CAGTAATTTA ATTATATATT GTAAAATCAT TTTCATTTGC CCCTAAGGGT CATTTCAGTG GGGCAATTAT TTGCTTTATT
TTTCAATATT TATATACGGA TAAGATATAT AGCTTTTCCA TTAGGAAGAT GAAATCATGA AATATTAGTT CTGTGCCACC
GATTAAACTA AAGTTAAAGA GTGAGAAACT AAATCAGAGG GAATAATGTG TAAAAGGTTA AGTGCAGAAA ACGGCGTGTG
GCCTCCTCCT GCATCAGGAA TAGAAAAGAT GCAAATTGAT TTACCTATCA TTCAATTAAT AGAATGAGTG GATTAGTAAA
AGGGTGAATA ACGTAGCAAG AGAAAAAGAA AGTAAGAGAA CAGAGGAAAA GCAAGCGATC ATTGAGTTGC TCGTTAATTC
TTAGCAGACA AATGTTAGTG TTAAATCACT TCATGTTTGA CTTAAAGAAT TAGATGTGAT CAATGCATTC AGAAAATATT
GGCACGTCCA CTCAAGTAGT TTTCATCTCC TCTATCACAA CACCAGATAT TTCCTTTGTT AATTAATGAG GCCAATACTG
AAAAACTTTC ATGTTGTGTA AAAACAATAT GATATTTCTT TAAAATGGTT AATGTGCCTT TTTTCTCATT TA

>Vigan.04G410400.01
ATGGGAGATA AAAGGCTCAG AAATCATGGA AGAAACTTTA GAATGGTTTC CATTGTGACT ATGGAAAACT ACTATGATTC
TGGCTGGCAC ATGAGCACCA GCTGGGCTCA ATGCAGTGAT CATTCTTCTT CCTTTGCAGT TCCTACACAA ATACTTCCTC
ATGCCACTGA CTCTGCCTCT CTTCAATTTG GTGAGTTCCA CTCATGGCCA CTTCCCATTG AAGGGGCCGA AGAAGAGAGA
GCAATGAGTG CTTCCAAGAG CCACAGCCAA GCTGAGAAAA GGCGCAGAGA CAGAATCAAT GCACAGCTTG CAACTCTCAG
AAAACTTATT CCCAAATCCG ATAAGATGGA CAAGGCAGCT TTACTAGGGA GTGTGATAGA CCATGTCAAA GATCTAAAGA
GAAAAACCAT GGATGTTAGC AGAGCTTTCA CAGTTCCAAC TGAAATTGAT GAAGTATCAA TTGACTGTGA CCATGTAGAA
GATGAAAGCT GCACTAAAGT GAACAAATTG AAGGAGAATA TTGTGATCAA AGCTTCTGTT TGCTGCGATG ATCGACCAGA
ACTGTTCCCT GAACTCATCC AAGTTCTCAA GGGCTTGAGA CTGACGGCAG TTAAAGCTGA CATAGCCAGT GTAGGTGGCC
GGATCAAAAG CATATTGGTG CTTTGTTCTA AGGATAGTGA AGAGGGTGTT TGCCTCACCA CTCTCAAACA GTCCCTCAAA
TCTGCTGTCA CCAAAATAGC TTCATCATCC ATGACATCTA ATTGCCCCAC CAGAAGTAAG AGGCAGAGAT TCTTCTTGCC
TTCTCGTTGC CTACAGTAA

>Vigan.04G410400.01
MGDKRLRNHG RNFRMVSIVT MENYYDSGWH MSTSWAQCSD HSSSFAVPTQ ILPHATDSAS LQFGEFHSWP LPIEGAEEER
AMSASKSHSQ AEKRRRDRIN AQLATLRKLI PKSDKMDKAA LLGSVIDHVK DLKRKTMDVS RAFTVPTEID EVSIDCDHVE
DESCTKVNKL KENIVIKASV CCDDRPELFP ELIQVLKGLR LTAVKADIAS VGGRIKSILV LCSKDSEEGV CLTTLKQSLK
SAVTKIASSS MTSNCPTRSK RQRFFLPSRC LQ*