GBrowse Details

Vigan.04G405300.01

Basic Information:
Name: Vigan.04G405300.01
Multiple alignment
Variant Information
Position: Chr04:51664255..51668457 (- strand)
Length: 4203
Functional Information:
Description: Similar to Uncharacterized protein. [I1LMP2, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: JAB/MPN domain (IPR000555)
Rpn11/EIF3F C-terminal domain (IPR024969)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:88.58,52.05,62.69,42.96,77.51,37.94,68.36,46.83
Arabidopsis thaliana homolog: AT3G11270.1, AT5G05780.1
Automatic updates:
Name: NM_001255942 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable 26S proteasome non-ATPase regulatory subunit 7-like (LOC100815353), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:51664255..51664609 (- strand)
Length: 355
Type: three_prime_UTR
Position: Chr04:51664610..51664678 (- strand)
Length: 69
Type: CDS
Position: Chr04:51665470..51665555 (- strand)
Length: 86
Type: CDS
Position: Chr04:51665634..51665691 (- strand)
Length: 58
Type: CDS
Position: Chr04:51665960..51666082 (- strand)
Length: 123
Type: CDS
Position: Chr04:51666236..51666294 (- strand)
Length: 59
Type: CDS
Position: Chr04:51666434..51666509 (- strand)
Length: 76
Type: CDS
Position: Chr04:51666664..51666760 (- strand)
Length: 97
Type: CDS
Position: Chr04:51666887..51666968 (- strand)
Length: 82
Type: CDS
Position: Chr04:51667051..51667143 (- strand)
Length: 93
Type: CDS
Position: Chr04:51668116..51668302 (- strand)
Length: 187
Type: CDS
Position: Chr04:51668303..51668457 (- strand)
Length: 155
Type: five_prime_UTR

>Vigan.04G405300.01 class=Sequence position=Chr04:51664255..51668457 (- strand)
AACACAACAC GCAAAGAAAA GTAGAAGAAA AGGCAAAGGA GTTGAGTTAG GCGCAGAAGA GAAGAGACGA GAGGAGGGAG
AAAAGAATTG AAGTTGGAAG ACGAAGAAGA AGAAGAGGAG GAAGATAAAG GGAAATTTGA GTTTCTGGAA TTGCAATGGA
CGTGATAAAG ACGCAGCAAA TCTCATCTCG ACCAATCGAG AAGGTCGTGG TTCATCCGCT CGTGCTTCTT AGCATCGTCG
ACAACTACAA TAGAGTCGCC AAGGACACGC GCAAGCGCGT CGTCGGCGTT TTGCTTGGCT CATCTTTCAA AGGCACCGTC
GACGTTACCA ACAGCTACGC CGGTTCGGAT CTGTTCTTTT CTCTTTCCAT TACGGCATTC CTTTACTAAA TAGTTGTTGG
AGTTGTTGCC AGGATTTTTG CCCTAACTTT GCAGCGGTAA TAGATATTAG TGAGATTGCG CGAGGTTGTT GATCCTAAAA
TTTGATTAAA GAAATTTCGA CCCTAAAACC CCTCTCGCTG AACTTAAATC TCTTGAACAT ACACGCAACC TGTTAGGAGC
TTAATCTTAG AATTACAGAA TGTAAATTTA ATGTTTAACT AGGTTTATTT ATCGTGGTGG CCAAGATTTT AATTTCCCTA
AGAGAGTTTA AAAAACATGT TCTCTTAGTA AAACGAAGCT GAGAGCAGTA GCATGTCGTT GATCATTTTC TGTAAGTTTT
GAGGCTCTGT GTTTCGAATC CGTTGTTCAT GCGTCGCACT TGCTCCTTCA CCCTTGTTTA TATGTGACCA AGCCCTTTAC
AGGTTCATCT ATACTTTGTT CTGCATCACA ACAGCCACTC ATAACACTTT CTCTTTCACT CGCCTGCCTT GCTTTCTTAA
GCCATCCTTT CCCACCTCCC TCGACCCTTT CTTGCTGATT CCCTTCACAT CTTCCTCATC TCTGGACGCT GTTACAGGTT
TAGTGTTTTG ATTTGCTTTT CGATAACTGA AAATTGGTTT TTTTGGGCAT GGTGATAATG GCTCTGGAAC TGGTGGATAT
TTACGCGACT AATTATATCA TGAGTCTCTT TGGATGCCAT GGTTATTAAA TTTCCGTTTT ATGTTTGCTT CACTGTTGCT
ATTATCTATT TATTACCTAT TTTCTATACG CGTGGTTTTC TCTGTGTTAT ATAGTAGGAC GATTTTACAT TTTGGTAAGA
TCGCCCTAAC CCTAATAGGA TCATATGTTT TACGATCTTG CGATCCCTCT CTGAATCCCT AGTGTGATCT TAACATTGAC
AACATTGCTC ACTTCTTAGT TCTCTTATTG ACAGTGCCGT TTGAAGAAGA TGACAAGGAT CCGAGCATCT GGTTTCTTGA
CCACAATTAC CATGAATCAA TGTTTTCCAT GTTTAAAAGA ATAAATGGTA TGAGTTGGGA GAATTTTTTT TTCCTTTATT
AATTGAATAC TCTAATATAA TTGAGCATGG ATTTGTTTTT TGTTTACAGC AAAGGAGCAT GTTGTGGGGT GGTATAGCAC
AGGTCCAAAG CTGCGTGAAA ATGACCTTGA CATTCATGGC TTATTTAATG AGTATGTTTT GATCCGAAAA CCTGTGTATA
ATAATATTTC AATGCCATGT GTTTTCTTCA CTTCCTTTTA GCATTCTGTC CTTATCCTAA TCTTTGTCCA AATTGACCAA
ACTAATAATG ATTGCAGTTA TGTTCCAAAT CCTGTCTTGG TTATCATTGA TGTTGAACCC AAGGAATTGG GAATCCCAAC
AAAAGCATAT TACGCTGTAG AAGAGGTTAA AGAGGTAGAA ATTATGTCTT TTATATCTGT GATAGAAATT TTTTATTCTT
TTTACTGATA TTATTGCAAA AGTGTTCTTG CTGTGTAAGC TAGTGTTTGC TCATCACTAA ATTAATTAGT AGTCAAAGAA
AGTTACATAT AGTTTATTCT GAATACAGAA TGCCACCCAA AAAAGCCAAA AGGTCTTTGT TCATGTGCCA TCCGAGATTG
CAGCTCATGA AGTTGAAGAA ATAGGTATTC CGTGCCATTA AACATAAAAC TGCTGTAATT TTTATTTTTT TATTCTGTTT
TCTGAAATGA AAATTTTGAA TTTTATTATT CATACAGTTT TGTAACCAGT TCCTCTCTTT TTATTCTTCT TACCCTTGTG
CAGGAGTCGA ACATTTACTT AGAGATGTAA AGGATACAAC CATTAGCACC CTTGCGACCG AGGTTTTACT TTTCCCTCAT
GCCACGTCCT TATTAATTTC TTTCACCGTG TTCTCTTTCC CTGATTCTAT TTGTTTTTTC ACTTCTAATA CGTTTGTTGT
CCTTTTAAAA GAAAAATAAT TGATGTTGAG TGTTGACAAT GTAATTTTTA CTTAGGTAAG TGCAAAACTT ACAGCCTTGA
AGGGTTTGGA TGCTAGACTT AAAGAGATAA GGAGTTACCT TGACCTGGTT ATTGATGGAA AGCTTCCCTT AAACCATGAG
ATCCTGTACC ATCTGCAGGT TCGTTTCTCA TATTCAGGCT CAGTAAATTC CGGATTATTT ACTTTGTTAT CAATTAGTTC
AAGAATCCTG ATTTAGTATT TTCTGCTGAT CCGAATTTCC TAGTTTAATT CGGAACCTTC TGTAGCAAAA CTAACAAAGC
ATGTGATGTG ACATTAATGG CTGGAAGGCT TAGTTGCTTG GAATAATAGA AGCATTCTTT TTCCTTTTTT TTTTCTTATG
CTACAATATT CTTTCTAACC GTCTCACTTC TATTTGCAAT TTGCAGGACG TGTTTAACCT GCTACCAAAT CTTAATGTGG
CTGATCTTAT CAAGGCGTTT GCAGGTAGAT TTGTGCCTTG TATTTTTCAA TGTCATGTTT TTCTAGAATA TCTCTTTTAA
ATCGTTGATC TGTCTTGTGT AGTGAAAACC AATGATATGA TGCTGGTAAT ATACCTCTCG TCTCTCATTA GAAGTGTAAT
TGCACTCCAC AACTTGATTA ACAACAAGGT TAGATACAAT TCCCTAAATT TTGCCGCAAG TATCATTTTT GTATGATGAT
TACGTAATTT GTTACCGTAT TATGAGAATA GCAATTGTTG CAAGGTTGGG AAAAAAATTA CTCCTCCATT TGTATATTAA
AGTTCAGTAT TTAATAAGCT AGGTACCTGA TGAGCTTAGG GCTGTTCTTG GATTACTTTG AATTGGATTT GAGGAAAATG
AAATCTGAAC CAATTAATTT TTATCAGTTA ATTTTTCTTT TATAAATTGG ACGATCCGGA ACCAATCAAG AACTGGTTGG
TTTGGATCAA TTTGAGTCCA TAGTTATGCA AATGTGCAGA ATTTTATTTT AGAAATAGAA CGAATATATT TTGTTAAAAA
AAAACTCGCA TAATCTTGTC ATTAAAAGGG GTAAATTACA TCTTATTGTA ATTGGCTTAC ATTAACTAAA TGATGTAGAA
GTTAAAAGAA AAATACACGA TTGTACTATA AAATTCCGTG CATAATAATT AAAGACGAAA AACTAACAAT ATTGATTTTT
TTTTTCAGTG TTTGTAGTTA TAAATCTAAT TCTCAAGCTA ATACATCGAT TTTGATTAGG TTAAAAATCA AAACTAATCA
GTTTGGATTA TTGGATTCAA ACTAAATCAA ACCCATTGAT TCTCTGCGTA CACCGTACTG GGTACATGGA TTATATCTAT
GTAAACAATG ATGAGTTAAT CTTGTGAAGT GAAAGAGGTT GCTAAATCAT CACTGATTTA CTGTGTTTCA TGTCTTGATT
TATTGGAATG TGATTTCAGA TGCTTAACAA AGAACATGAA CGGGCAGAAG ACTCAAAGTC AGTTACCGTG CCTAGTGCAG
CTGCATAAGT TTTGATGGAT TGTGATGTTC GGAACTCTCA ATGTTATTGA ATACTTGGAT TAAGATTGTA ACACTTTTTT
TCTTTTTCTT TTTTTTACTT TTGTCGGGTT AGAAAACTTA TACCTAACGT GGCATAATGA TCTTTTTATG CTTGTTCAGG
TGCTCCATGC TGTTTACCCT TCATTACTTT GCTCAATTTC TTTGTTTGGT AGTTTTGGAA ACGGCTGTTA AAGAATTCGT
GATTACAAAC AAATTTAGAT TTCAAAAATA TCTTTTGCCC TGCTTAATTT TTTTCTGTTT TTTAATTGAC CGGAATCCGC
TGAATCCCGT ACATTGTGTT TAGTTGAGAC TAGGAAGAAA TCA

>Vigan.04G405300.01
AACACAACAC GCAAAGAAAA GTAGAAGAAA AGGCAAAGGA GTTGAGTTAG GCGCAGAAGA GAAGAGACGA GAGGAGGGAG
AAAAGAATTG AAGTTGGAAG ACGAAGAAGA AGAAGAGGAG GAAGATAAAG GGAAATTTGA GTTTCTGGAA TTGCAATGGA
CGTGATAAAG ACGCAGCAAA TCTCATCTCG ACCAATCGAG AAGGTCGTGG TTCATCCGCT CGTGCTTCTT AGCATCGTCG
ACAACTACAA TAGAGTCGCC AAGGACACGC GCAAGCGCGT CGTCGGCGTT TTGCTTGGCT CATCTTTCAA AGGCACCGTC
GACGTTACCA ACAGCTACGC CGTGCCGTTT GAAGAAGATG ACAAGGATCC GAGCATCTGG TTTCTTGACC ACAATTACCA
TGAATCAATG TTTTCCATGT TTAAAAGAAT AAATGCAAAG GAGCATGTTG TGGGGTGGTA TAGCACAGGT CCAAAGCTGC
GTGAAAATGA CCTTGACATT CATGGCTTAT TTAATGATTA TGTTCCAAAT CCTGTCTTGG TTATCATTGA TGTTGAACCC
AAGGAATTGG GAATCCCAAC AAAAGCATAT TACGCTGTAG AAGAGGTTAA AGAGAATGCC ACCCAAAAAA GCCAAAAGGT
CTTTGTTCAT GTGCCATCCG AGATTGCAGC TCATGAAGTT GAAGAAATAG GAGTCGAACA TTTACTTAGA GATGTAAAGG
ATACAACCAT TAGCACCCTT GCGACCGAGG TAAGTGCAAA ACTTACAGCC TTGAAGGGTT TGGATGCTAG ACTTAAAGAG
ATAAGGAGTT ACCTTGACCT GGTTATTGAT GGAAAGCTTC CCTTAAACCA TGAGATCCTG TACCATCTGC AGGACGTGTT
TAACCTGCTA CCAAATCTTA ATGTGGCTGA TCTTATCAAG GCGTTTGCAG TGAAAACCAA TGATATGATG CTGGTAATAT
ACCTCTCGTC TCTCATTAGA AGTGTAATTG CACTCCACAA CTTGATTAAC AACAAGATGC TTAACAAAGA ACATGAACGG
GCAGAAGACT CAAAGTCAGT TACCGTGCCT AGTGCAGCTG CATAAGTTTT GATGGATTGT GATGTTCGGA ACTCTCAATG
TTATTGAATA CTTGGATTAA GATTGTAACA CTTTTTTTCT TTTTCTTTTT TTTACTTTTG TCGGGTTAGA AAACTTATAC
CTAACGTGGC ATAATGATCT TTTTATGCTT GTTCAGGTGC TCCATGCTGT TTACCCTTCA TTACTTTGCT CAATTTCTTT
GTTTGGTAGT TTTGGAAACG GCTGTTAAAG AATTCGTGAT TACAAACAAA TTTAGATTTC AAAAATATCT TTTGCCCTGC
TTAATTTTTT TCTGTTTTTT AATTGACCGG AATCCGCTGA ATCCCGTACA TTGTGTTTAG TTGAGACTAG GAAGAAATCA

>Vigan.04G405300.01
ATGGACGTGA TAAAGACGCA GCAAATCTCA TCTCGACCAA TCGAGAAGGT CGTGGTTCAT CCGCTCGTGC TTCTTAGCAT
CGTCGACAAC TACAATAGAG TCGCCAAGGA CACGCGCAAG CGCGTCGTCG GCGTTTTGCT TGGCTCATCT TTCAAAGGCA
CCGTCGACGT TACCAACAGC TACGCCGTGC CGTTTGAAGA AGATGACAAG GATCCGAGCA TCTGGTTTCT TGACCACAAT
TACCATGAAT CAATGTTTTC CATGTTTAAA AGAATAAATG CAAAGGAGCA TGTTGTGGGG TGGTATAGCA CAGGTCCAAA
GCTGCGTGAA AATGACCTTG ACATTCATGG CTTATTTAAT GATTATGTTC CAAATCCTGT CTTGGTTATC ATTGATGTTG
AACCCAAGGA ATTGGGAATC CCAACAAAAG CATATTACGC TGTAGAAGAG GTTAAAGAGA ATGCCACCCA AAAAAGCCAA
AAGGTCTTTG TTCATGTGCC ATCCGAGATT GCAGCTCATG AAGTTGAAGA AATAGGAGTC GAACATTTAC TTAGAGATGT
AAAGGATACA ACCATTAGCA CCCTTGCGAC CGAGGTAAGT GCAAAACTTA CAGCCTTGAA GGGTTTGGAT GCTAGACTTA
AAGAGATAAG GAGTTACCTT GACCTGGTTA TTGATGGAAA GCTTCCCTTA AACCATGAGA TCCTGTACCA TCTGCAGGAC
GTGTTTAACC TGCTACCAAA TCTTAATGTG GCTGATCTTA TCAAGGCGTT TGCAGTGAAA ACCAATGATA TGATGCTGGT
AATATACCTC TCGTCTCTCA TTAGAAGTGT AATTGCACTC CACAACTTGA TTAACAACAA GATGCTTAAC AAAGAACATG
AACGGGCAGA AGACTCAAAG TCAGTTACCG TGCCTAGTGC AGCTGCATAA 

>Vigan.04G405300.01
MDVIKTQQIS SRPIEKVVVH PLVLLSIVDN YNRVAKDTRK RVVGVLLGSS FKGTVDVTNS YAVPFEEDDK DPSIWFLDHN
YHESMFSMFK RINAKEHVVG WYSTGPKLRE NDLDIHGLFN DYVPNPVLVI IDVEPKELGI PTKAYYAVEE VKENATQKSQ
KVFVHVPSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVS AKLTALKGLD ARLKEIRSYL DLVIDGKLPL NHEILYHLQD
VFNLLPNLNV ADLIKAFAVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHERAEDSK SVTVPSAAA*