GBrowse Details

Vigan.04G395200.01

Basic Information:
Name: Vigan.04G395200.01
Multiple alignment
Variant Information
Position: Chr04:50900471..50903052 (- strand)
Length: 2582
Functional Information:
Description: Similar to U6 snRNA-associated Sm-like protein LSm4-like isoform X1. [XP_004495969.1, Cicer arietinum]
InterPro: Ribonucleoprotein LSM domain (IPR001163)
Ribonucleoprotein LSM domain, eukaryotic/archaea-type (IPR006649)
Like-Sm (LSM) domain (IPR010920)
U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3 (IPR027141)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.25,13.58,10.66,12.14,20.38,27.14,22.47,14.90
Automatic updates:
Name: NM_001352689 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max small nuclear ribonucleoprotein family protein (LOC100500134), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:50900471..50900476 (- strand)
Length: 6
Type: three_prime_UTR
Position: Chr04:50900477..50900724 (- strand)
Length: 248
Type: CDS
Position: Chr04:50901574..50901613 (- strand)
Length: 40
Type: CDS
Position: Chr04:50902381..50902458 (- strand)
Length: 78
Type: CDS
Position: Chr04:50902543..50902641 (- strand)
Length: 99
Type: CDS
Position: Chr04:50902801..50902803 (- strand)
Length: 3
Type: CDS
Position: Chr04:50902804..50903052 (- strand)
Length: 249
Type: five_prime_UTR

>Vigan.04G395200.01 class=Sequence position=Chr04:50900471..50903052 (- strand)
ACATGGTAAG CACCTCATTT TCTCCAACCC AGTTCTTTGA AAGCGCTAAC TTTAACATTT TAAATCGGAA ACAAACCTCA
CTAGGATTCA ACATCCCCCA ACTCGTCGTA TAATCTGAAG CTCTAGGGTA ACCGTTACTG TTATTTAACC TTACATTATA
CTGTATATGA TTTGACCTTT TTACCCCCAT TTTGTGTAAA CTCCTTGCAG CTTCCTCTCT CCCTTCTCAA AACTGCCCAA
GGCCACCCAA TGGTAACTCA CTTGTTCATC ATGTTCCGTT TTTTTTTTGT ACCAAGTGGT TCCTCATTAT GATGATGATT
ATGTTTCGTT TGATTTCTAT TATTTTTATT ATTATGATAT GATGATTATT ATGATGATGA TGGTGATGTT GATGTTATGA
CTGTGTAACA GTTGGTAGAA CTGAAAAATG GAGAGACTTA TAACGGCCAT TTGGTTAATT GCGATACATG GATGAACATC
CATCTCCGAG AAGTCATTTG CACGTCTAAA GTAATGTTGT TTTTATCGAT CCCTTGTAAT TTGACTTTGG TTGAAATGTT
TGTTCATAGA TTTTGATTGA AACTGGCAAT GTAGGATGGA GATAGATTTT GGAGGATGCC TGAATGCTAC ATACGAGGCA
ATACAATCAA GTACCTTCGA GTTCCTGATG AGGTGTGTAG CGGAGATTTT CTTTTTTATT ATTCCAGCAA AAGCTAAAGA
GATGCTTAAG CTAGAAACAT TCAATGTATG TTATCCTCCT TTAGTGTTTA TATTTATAGA CTTGGGAAGA ATTATTATCC
ACCCTATTAT TAGGGGTAGT GGATCTCATC AAGTAGATGA AACAAAAACT CGGGTTTGTT ATTCTAAATG GGTTTCACTG
GGTACTGAGA CCCGAATATA ACTTGAATAT AGCCAACTAC TCACCTTAAG ACCGAGATCT GCTCTCCCAG ACTGTCCAAT
TGTGAAAAAG AAACTTTTAA AAAATGGGTT GAGAAGAAGG TGAAGCTTTG TCAATTGTAG AGTTGCTAGT TACCTTGTGA
TCTGATGGTC ATAGAAAAAA GCCCGATCCT TGCGTGCTTA AGGGAACTGA AATAATTGCA GTCAAATCTG CATGCATTCA
CTCAGTCATT GTGGTTAACT GTTTGATGAC AATAGGATGG TTCAGATTTT AAACGTTTTA TCTCTGATTC ATCGAAATAA
AATATGAACC CGCTGATGAA GGTTCCAAAT TGCTGAATAC TGAGTTTGGA ACTTTGACTG TAGACAATCT AAATCTGCTT
TTAAAGCTGC ACTCATCCCA ATCACCCTTT AACCTTGCAG TGGTGGAGAA TTGTGCATTG GGCCCATTTC AGGAAATAGA
ATTAAGAGTT TTTGTTTAGT GATATATGAG CAGCACATAC ATATATTCTT CTAATTTTTA TTTTGTGTTA TTACTTTAGG
TTATTGACAA AGTTCAAGAA GAAACCAAAA CCCGAGCAGG TAAGCATTGT TTTGGCATCT AGCTGGTTTG TGAATTTAAG
TAGAATTAAA TTGTGGATGT GAGTTTGAAA ATTGTATTGA AGTGAACATG ATGAGGACCC TCAAATCATA TTCTTTGAGA
GTTTCAGTAA ATAGATAGTG TCGGGCCATG AGAATTTAGG TTCCTCAATC GTTAGTAGGT CCTTTGAAAT AGAAATCTGG
CAACTCCCAT TTTCGTCCGG GTAGATAAAA TTTATTTCCG AAAATTCAAA AATAGAAAAA TTGGCAATGT TGTGTTTCTC
ATATTTGTTG GAATGCTGAA CTATCTTTCA TATTGTTGTC ATGGCGATTT TGCTCAATTG CATCATGTTT TCATCTATGA
AATGCAAGTA TACAGGGTCT CAAATCTAAA ACAAGTCCTA AAAGGTATTG TGAAAGAAAA AGAGCGAAAA GAAAAAGAAA
AAATAAAGTG CCGCGTTTTG AGTAATTTGT TTTATTGCAA ATCATCAAAT TCATGACCTT TCCAAACTCT TGTTTTTAAA
TTCTCTTTTT AAGTTCGCCT CCCGTTGCAA TTTCGGTATT TTGACCTCTG GGCTATGAAT CCACGAACAT ATGATGAATA
TGATAGTTGG TTGTTCAGTA TCTTGTAAGT TAACCAGGTG ATTTTTTTTT TGGAGACATT GAAAGATTCC AATGCTTCTC
ATAATTCATG TATATACATA TGTGTGTGTC TGTGTGTGTG TTTTCAATAT CAATGAATTA ATATTGTCTA TTTGAAAGTG
TTAATTTAGC TGTGTATACC TGCCTCTCAT ACTGCCTTCT GGTTATTGAA AAATCTAGAT ATTCTCTGAT TAATATCTTC
TTTTTCAGAT CGTAAACCAC CTGGTGTGGG GCGTGGGAGG GGAAGAGGCA GAGAAGAAGG TGCTGGTGGA CGTCAATCAA
AAGGAATTGG GCGTGGTCTT GATGATGGTG GTACCAAGGG AGCTGGAGGA GGTCGAGGCA AGGGTGGCCC TAGCGGAAAG
CCTGGTGGAA ATAGAGGTAA ATCACGGTCC TCTTTGCTTG TATTACCCTT TCTTCAATCA TTTGTAGATT CTCTCCTATA
CTTCACCATG CCATGATTTA AA

>Vigan.04G395200.01
ACATGGTAAG CACCTCATTT TCTCCAACCC AGTTCTTTGA AAGCGCTAAC TTTAACATTT TAAATCGGAA ACAAACCTCA
CTAGGATTCA ACATCCCCCA ACTCGTCGTA TAATCTGAAG CTCTAGGGTA ACCGTTACTG TTATTTAACC TTACATTATA
CTGTATATGA TTTGACCTTT TTACCCCCAT TTTGTGTAAA CTCCTTGCAG CTTCCTCTCT CCCTTCTCAA AACTGCCCAA
GGCCACCCAA TGTTGGTAGA ACTGAAAAAT GGAGAGACTT ATAACGGCCA TTTGGTTAAT TGCGATACAT GGATGAACAT
CCATCTCCGA GAAGTCATTT GCACGTCTAA AGATGGAGAT AGATTTTGGA GGATGCCTGA ATGCTACATA CGAGGCAATA
CAATCAAGTA CCTTCGAGTT CCTGATGAGG TTATTGACAA AGTTCAAGAA GAAACCAAAA CCCGAGCAGA TCGTAAACCA
CCTGGTGTGG GGCGTGGGAG GGGAAGAGGC AGAGAAGAAG GTGCTGGTGG ACGTCAATCA AAAGGAATTG GGCGTGGTCT
TGATGATGGT GGTACCAAGG GAGCTGGAGG AGGTCGAGGC AAGGGTGGCC CTAGCGGAAA GCCTGGTGGA AATAGAGGTA
AATCACGGTC CTCTTTGCTT GTATTACCCT TTCTTCAATC ATTTGTAGAT TCTCTCCTAT ACTTCACCAT GCCATGATTT
AAA

>Vigan.04G395200.01
ATGTTGGTAG AACTGAAAAA TGGAGAGACT TATAACGGCC ATTTGGTTAA TTGCGATACA TGGATGAACA TCCATCTCCG
AGAAGTCATT TGCACGTCTA AAGATGGAGA TAGATTTTGG AGGATGCCTG AATGCTACAT ACGAGGCAAT ACAATCAAGT
ACCTTCGAGT TCCTGATGAG GTTATTGACA AAGTTCAAGA AGAAACCAAA ACCCGAGCAG ATCGTAAACC ACCTGGTGTG
GGGCGTGGGA GGGGAAGAGG CAGAGAAGAA GGTGCTGGTG GACGTCAATC AAAAGGAATT GGGCGTGGTC TTGATGATGG
TGGTACCAAG GGAGCTGGAG GAGGTCGAGG CAAGGGTGGC CCTAGCGGAA AGCCTGGTGG AAATAGAGGT AAATCACGGT
CCTCTTTGCT TGTATTACCC TTTCTTCAAT CATTTGTAGA TTCTCTCCTA TACTTCACCA TGCCATGA

>Vigan.04G395200.01
MLVELKNGET YNGHLVNCDT WMNIHLREVI CTSKDGDRFW RMPECYIRGN TIKYLRVPDE VIDKVQEETK TRADRKPPGV
GRGRGRGREE GAGGRQSKGI GRGLDDGGTK GAGGGRGKGG PSGKPGGNRG KSRSSLLVLP FLQSFVDSLL YFTMP*