GBrowse Details

Vigan.04G395100.01

Basic Information:
Name: Vigan.04G395100.01
Multiple alignment
Variant Information
Position: Chr04:50893838..50898366 (+ strand)
Length: 4529
Functional Information:
Description: Similar to Uncharacterized protein. [I1JQL5, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: WD40 repeat (IPR001680)
WD40/YVTN repeat-like-containing domain (IPR015943)
WD40-repeat-containing domain (IPR017986)
WD40 repeat, conserved site (IPR019775)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.76,18.54,7.58,11.72,13.89,10.08,9.23,7.35
Arabidopsis thaliana homolog: AT2G47790.1
Automatic updates:
Name: NM_001255603 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WD repeat-containing protein 89 homolog (LOC100794786), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:50893838..50893961 (+ strand)
Length: 124
Type: five_prime_UTR
Position: Chr04:50893962..50894092 (+ strand)
Length: 131
Type: CDS
Position: Chr04:50894220..50894427 (+ strand)
Length: 208
Type: CDS
Position: Chr04:50894529..50894624 (+ strand)
Length: 96
Type: CDS
Position: Chr04:50894710..50894784 (+ strand)
Length: 75
Type: CDS
Position: Chr04:50895847..50895957 (+ strand)
Length: 111
Type: CDS
Position: Chr04:50896397..50896488 (+ strand)
Length: 92
Type: CDS
Position: Chr04:50896817..50896901 (+ strand)
Length: 85
Type: CDS
Position: Chr04:50897760..50898122 (+ strand)
Length: 363
Type: CDS
Position: Chr04:50898123..50898366 (+ strand)
Length: 244
Type: three_prime_UTR

>Vigan.04G395100.01 class=Sequence position=Chr04:50893838..50898366 (+ strand)
AAATTATTTA CCTTGAAAAA AAAACAAATA AATTAGGTGT ACCGTTCAAC CCTAAACCCA GGCTTTTATG AAGAAGGCAA
TATTGTTGAT GTACCTCTGC AACTCTATAA CAGACACAAC TTAAATGGAG AGCAGTGCGG CCATGGATGT TGAGGAGCAA
CCTTCACCCA ATTCCACCAA CGTAAAACGA TTCGGCCTTA AAAACTCTAT TCAAACCAAC TTCGGCGATG ACTATGTTTT
CCAAATTGTC CCAAAGTACG TACCTTCTTT TTCTTCCCCG TTTAAGCTCG TTGAATTCAT GCTCAAACTC GATGGAAAGT
AGTAAAGTTT CCTTCTTAAT TCTCAAACGT GACATGGGTT CCAATTTTTT TGTTAATAAA AGGGATGATT GGAGTGCAAT
GGCGGTTTCA CTGTCAACGA GCGCAGTGAA ACTATATTCA CCTATGGCGG GTCAATATTT CGGAGAGTGC AAGGGTCACA
CCGCAACCAT CAACCAGATT TTATTTTCGG GTCCTTCACA CCACCAAGTT TTGTGTTCGT GCTCTTCTGA CGGCACTATT
AGAGCTTGGG ACACACGCAC ATTTCAGCAG GTAGATTTGT TTTGTTTCTT TTTTTTTCTT TTATTCTAAG TTTTTCATGT
GTACAAGTAA TCTGATGCTT GAGTGTGTTG GACTGAAATG GACAATTGTA GGTTTCTTGC ATCAATGCGG GTTCTTCGCA
GGAGGTTTTC AGCTTCTGTC TTGGAGGAAC TAGTGGGAAT TTAGTTGCCG CCGGGTGTAA ATCGCAGGTT TGCGTTTGAT
TGTGGATTTT CTATGATACA TGATTTAAAC TACTGTTGTT TTTTATGTGT CCTAAAGTTT GAGTTTGCTC AGATACTGTT
CTGGGATTGG AGAAATATGA AGCAAATTGC ATGCCTGGAA GACTCTCATG TAGATGATGT CACTCAGGTT TGTTCTGTTC
AAATTGCTTG AATTACATGT GACAACAATT TATATTTTAG TCGGAAACTT GATATACTTG AATTATCTGA AAATTATAAT
CCTGTGGAAA AAGGACTTTT TGTTTGGTGA TATGCCCTGC CTGAAAAATT TTGTTGTGAG AAAGAGAAAC GCAGCAATTG
ATTCAATTAT TATAATTCCA ATATCTTATA AAAAGGGTAG GGTAATTAAG AACTACAGCC AAGGAACTCC AAATATTTCT
ATATAGAAAA AACTAGAATT TTTTCTAGAT TTGAAGAAAT TATTGGTGAA TGGTCCTTTG TAGATTTATG AAACAGTGTA
CTTGATTCCT CATTTTCTAG GTTAGACTTA ATTTCTATTT TCATGCAGAA GTCTTCATGG AATTTATATT AGTAAGAAGT
AGGCTTCAAA TATTTTATAT CTTGACGGTT TCTATTAGGC TTTGTTCACT TGAATGGATT TGAGGAAGAG TGATTGAATG
GATTTAAGAG GATTTGAAAA TAATTTTTGT TGTTGTTTAT TTGAGTGGAT TTGGAGTTAG GTCAGGGTGA ATTTGGAAGT
AAATTTTTTT AATTTGTCAC ATCAATCAAA TCCTACACTA ATTTTCATAA ACGTTGTTTC CAAATTCATT CTCACTTACC
TCCAAATTCA CTCAAATAAA CTACAAAAAA ATTTATCTTC AAATCCGCTC AATTACTCTC TCCCAAATCC ATTCAAGTGA
ACAAAGGTAT AGTTATAACT TGTTTCTTTA CCGCATACCC CCATCTTCCT TAACCCTACT TCACCATAAT TAATGCGGTT
ATATTTCTTG TTTAGGGTTC ACGGTAACCT GTTATAGAAT GAAGCAAGGA AAATATGTTA TGCAGAACGT TTTCCTCGCA
AGTTGAAGAG AGTACCAATT CGTTTCATTA TAAAAAATAA AGCTCTAGCA AGTGCTATGC TAACTTTCAT TTTTTTAGTA
AATAAGATGA AATTGATTTT TTAATTATTC AATTCAGTGT GATACATGGG TTTATGTTTG ATTTGACTAA AATCTGCAAT
TTGTGCCAGG TTCATTTTGT CCCCAACGAA CAAGGAAAGC TTATTTCTGC TTCAGTAGAT GGGTTGATCT GCACGTTTGA
TACCACTGGA GATATCAATG ATGATGATCA TCTAGAGTCA GTAAGTCTGG ATTTCAATTC AGTTTCCCCA GTTGTTAATT
CTTGTAAAGC ATTTGATTCT TAATTAAGGT ATTAAAGACA GCTAAGCCCT CTTGAAGTGG ATTGTATTTA GGTTTCCTTG
GTTTTCTACT ATTGGGTATT CTATTTCAAG AGAATACCTA TTCCAACTTG TATAGATTGA GCGGACCTTC TATATTTTTT
ATTTTCTTTT TTTGCAACTT ATTTTTCTCT TTTCTGCAAA AAATTTTATC ATCCCACCCT TTAACTGAGT ATTTCCTTAT
CTATGTATCC ATAATTCCAG ATAAATACAT ATCCGTTTGT ATTTGTCTTA TCCATCTATC CAGATATATA TTTTGCAATA
AGTTTTTGAG TCTTTGTATG TTTGAGCAAC AAAAAGTTTT TTATGCAAAA TTATATATTT TTTTTGTACA ACAATGTAGG
TGATTAATAT GGGGACTTCA ATTGCAAAGG TGGGGATTTT TGGAGAGAGT TACCAGAAGC TTTGGTGTTT AACACATATT
GAAACCCTAG GGTACAGTGA ATCTCCATTA CTTGTGTTTT TCTTAAGTCC TATTAGTTAT TCAAAGCTTA CCCATGCTCT
ATTTCTGCCT GCTATGGTTG TATTCTGCAC TTTCAATTTT GTTACTGTTA CTGGAGAAAG GTAAGTTCAT ACACAGAATG
AGCAACTGTC ACAATCACAG AGTAGTAGTG TGCGTTCGGA TAGAACTTAT AGTGTTTATG CTAATAATTA CATTCGTATG
CTCATAATGT GTTATATGAA TTTTTATGTG TATACTAAGT ACGAACACTT TCCTCATTTA AAACAGTTAG TTCTAATATT
TCTTTCTTCT GTTACCTAGT ATCTGGAACT GGAAAGATGG TAGAAATGAA GGAAACTTCT CAGATGCACG TACTTTAGCT
TCTGAAAGTT GGAATTTGGA CCATGTGAGT TCCTCCTATA CTTTTATACG AATATGGTGC ATGAAAACAG TCTTCATATA
AAAAAAAAAT GTGATGTGAT GTGTAAGCAT CGTGTATGCA TATGATAATA TATCATTGCT TCACATAGAT AGAAACGAAG
AAAAGAAAGA AGGGCAGGGC TGGTAACTAG TACATATTTG AAAGTGTTAT AATTCTCTTA AAGGATCCTT CACACTTTTC
CTTGCCTTTG CATCTGCTAC TTTTGAGCTA TGTGAAGTCT TTTTAATTGA ACTGACATCC CTGCTTTTAG GAAAATTCCT
GGAGAAGCAA AAGTTTTTGT GTGTATTTAC ATGTCTTTAA ATTTCATGCT GAAGAGAAGG ATGCATTAGA TTAGCTGAGC
AGGCTGAATA AATGATCTTC CAAGTTTAAA GTAAAACTTT TATATTGCTC AACAAATAAA TTGTTGGAGA TTCTATGTTG
AGTAAAGATA AAACGAATGT CCAAACTTCA CTCTATAAGA TAGTTTTGTA ATCTTAAGTT AAGTTAAAAT TCATTTATTA
AAATGGTATT AGAGTCATTC AAAGTTTATT CTAGTAAGAT TTTGTATTTC TTAGGTCTAT CGTTCCACTA CTATTAGGTC
ATTTTCGGAC CACTCATTAA TATTATATCT CATACTTGAA ATATGTATGT CTGAGCATGA GGGGTGTGTC GGAGATCATA
CATTAACTAG AAATAAATGA ATTTGAAATA TACAAGTGAA TATAAATCTT ACCTTATAAG TTGATTTGGT AAGATTAAAT
TAGGTTTAAA GTTTACTTTG GAAGACAAAT TTTATATTAT GTCATATAAG TCTTAGCCCA CAAAATATAC TTTCCTTGGC
AGGTTGATTA TTTCATCGAT TGCCACTACT ACAGAGAATC TGAAAAACTA TGGGTGATTG GTGGCACTAA TGGTGGTACT
ATGGGCTACT TTCCTGTAAA TTACAAAGGA GTGGCAACAA TTGGAGGTGC AGAAGCAATT CTTGAAGGTG GGCACACAGG
TGTTATTAGG AGTGTTTTAC CAATGTCAAA AATTCATTCT AACAGTCCTA GCCAAGGCAT TTTTGGATGG TCTGGTGGAG
AAGATGGTCG GCTATGTTGT TGGCTATCTG ATGATTCCTC TGAATCAAAT CGATCTTGGA TTTCAAGCAC ATTGATTATG
AGGCCAGAAA AAGCTCGCAA GAAAAATCGT CATCAACCCT ACTAGCAAGA ATATTCCCAG CCATTAACTC TCAGTTCGAT
ACTGAAGGAG CAATTTTTGT TTCATTAGCC AACAGTTACT TCTATTTTCA CCTCAATTTG AGTTGAAATG CCTTGGATTT
TTATAAAAAT TATGTATTTG TTGTCAGATA TGTCCTCAAC TGCATGTAAT ATTTGTACGT TGCCCTTTTT GTTTTTCCAA
AATGCACAGA TCACTTTATC CATTTTGTAA TCTTGTATTG GTATGGAGT

>Vigan.04G395100.01
AAATTATTTA CCTTGAAAAA AAAACAAATA AATTAGGTGT ACCGTTCAAC CCTAAACCCA GGCTTTTATG AAGAAGGCAA
TATTGTTGAT GTACCTCTGC AACTCTATAA CAGACACAAC TTAAATGGAG AGCAGTGCGG CCATGGATGT TGAGGAGCAA
CCTTCACCCA ATTCCACCAA CGTAAAACGA TTCGGCCTTA AAAACTCTAT TCAAACCAAC TTCGGCGATG ACTATGTTTT
CCAAATTGTC CCAAAGGATG ATTGGAGTGC AATGGCGGTT TCACTGTCAA CGAGCGCAGT GAAACTATAT TCACCTATGG
CGGGTCAATA TTTCGGAGAG TGCAAGGGTC ACACCGCAAC CATCAACCAG ATTTTATTTT CGGGTCCTTC ACACCACCAA
GTTTTGTGTT CGTGCTCTTC TGACGGCACT ATTAGAGCTT GGGACACACG CACATTTCAG CAGGTTTCTT GCATCAATGC
GGGTTCTTCG CAGGAGGTTT TCAGCTTCTG TCTTGGAGGA ACTAGTGGGA ATTTAGTTGC CGCCGGGTGT AAATCGCAGA
TACTGTTCTG GGATTGGAGA AATATGAAGC AAATTGCATG CCTGGAAGAC TCTCATGTAG ATGATGTCAC TCAGGTTCAT
TTTGTCCCCA ACGAACAAGG AAAGCTTATT TCTGCTTCAG TAGATGGGTT GATCTGCACG TTTGATACCA CTGGAGATAT
CAATGATGAT GATCATCTAG AGTCAGTGAT TAATATGGGG ACTTCAATTG CAAAGGTGGG GATTTTTGGA GAGAGTTACC
AGAAGCTTTG GTGTTTAACA CATATTGAAA CCCTAGGTAT CTGGAACTGG AAAGATGGTA GAAATGAAGG AAACTTCTCA
GATGCACGTA CTTTAGCTTC TGAAAGTTGG AATTTGGACC ATGTTGATTA TTTCATCGAT TGCCACTACT ACAGAGAATC
TGAAAAACTA TGGGTGATTG GTGGCACTAA TGGTGGTACT ATGGGCTACT TTCCTGTAAA TTACAAAGGA GTGGCAACAA
TTGGAGGTGC AGAAGCAATT CTTGAAGGTG GGCACACAGG TGTTATTAGG AGTGTTTTAC CAATGTCAAA AATTCATTCT
AACAGTCCTA GCCAAGGCAT TTTTGGATGG TCTGGTGGAG AAGATGGTCG GCTATGTTGT TGGCTATCTG ATGATTCCTC
TGAATCAAAT CGATCTTGGA TTTCAAGCAC ATTGATTATG AGGCCAGAAA AAGCTCGCAA GAAAAATCGT CATCAACCCT
ACTAGCAAGA ATATTCCCAG CCATTAACTC TCAGTTCGAT ACTGAAGGAG CAATTTTTGT TTCATTAGCC AACAGTTACT
TCTATTTTCA CCTCAATTTG AGTTGAAATG CCTTGGATTT TTATAAAAAT TATGTATTTG TTGTCAGATA TGTCCTCAAC
TGCATGTAAT ATTTGTACGT TGCCCTTTTT GTTTTTCCAA AATGCACAGA TCACTTTATC CATTTTGTAA TCTTGTATTG
GTATGGAGT

>Vigan.04G395100.01
ATGGAGAGCA GTGCGGCCAT GGATGTTGAG GAGCAACCTT CACCCAATTC CACCAACGTA AAACGATTCG GCCTTAAAAA
CTCTATTCAA ACCAACTTCG GCGATGACTA TGTTTTCCAA ATTGTCCCAA AGGATGATTG GAGTGCAATG GCGGTTTCAC
TGTCAACGAG CGCAGTGAAA CTATATTCAC CTATGGCGGG TCAATATTTC GGAGAGTGCA AGGGTCACAC CGCAACCATC
AACCAGATTT TATTTTCGGG TCCTTCACAC CACCAAGTTT TGTGTTCGTG CTCTTCTGAC GGCACTATTA GAGCTTGGGA
CACACGCACA TTTCAGCAGG TTTCTTGCAT CAATGCGGGT TCTTCGCAGG AGGTTTTCAG CTTCTGTCTT GGAGGAACTA
GTGGGAATTT AGTTGCCGCC GGGTGTAAAT CGCAGATACT GTTCTGGGAT TGGAGAAATA TGAAGCAAAT TGCATGCCTG
GAAGACTCTC ATGTAGATGA TGTCACTCAG GTTCATTTTG TCCCCAACGA ACAAGGAAAG CTTATTTCTG CTTCAGTAGA
TGGGTTGATC TGCACGTTTG ATACCACTGG AGATATCAAT GATGATGATC ATCTAGAGTC AGTGATTAAT ATGGGGACTT
CAATTGCAAA GGTGGGGATT TTTGGAGAGA GTTACCAGAA GCTTTGGTGT TTAACACATA TTGAAACCCT AGGTATCTGG
AACTGGAAAG ATGGTAGAAA TGAAGGAAAC TTCTCAGATG CACGTACTTT AGCTTCTGAA AGTTGGAATT TGGACCATGT
TGATTATTTC ATCGATTGCC ACTACTACAG AGAATCTGAA AAACTATGGG TGATTGGTGG CACTAATGGT GGTACTATGG
GCTACTTTCC TGTAAATTAC AAAGGAGTGG CAACAATTGG AGGTGCAGAA GCAATTCTTG AAGGTGGGCA CACAGGTGTT
ATTAGGAGTG TTTTACCAAT GTCAAAAATT CATTCTAACA GTCCTAGCCA AGGCATTTTT GGATGGTCTG GTGGAGAAGA
TGGTCGGCTA TGTTGTTGGC TATCTGATGA TTCCTCTGAA TCAAATCGAT CTTGGATTTC AAGCACATTG ATTATGAGGC
CAGAAAAAGC TCGCAAGAAA AATCGTCATC AACCCTACTA G

>Vigan.04G395100.01
MESSAAMDVE EQPSPNSTNV KRFGLKNSIQ TNFGDDYVFQ IVPKDDWSAM AVSLSTSAVK LYSPMAGQYF GECKGHTATI
NQILFSGPSH HQVLCSCSSD GTIRAWDTRT FQQVSCINAG SSQEVFSFCL GGTSGNLVAA GCKSQILFWD WRNMKQIACL
EDSHVDDVTQ VHFVPNEQGK LISASVDGLI CTFDTTGDIN DDDHLESVIN MGTSIAKVGI FGESYQKLWC LTHIETLGIW
NWKDGRNEGN FSDARTLASE SWNLDHVDYF IDCHYYRESE KLWVIGGTNG GTMGYFPVNY KGVATIGGAE AILEGGHTGV
IRSVLPMSKI HSNSPSQGIF GWSGGEDGRL CCWLSDDSSE SNRSWISSTL IMRPEKARKK NRHQPY*