GBrowse Details

Vigan.04G380700.01

Basic Information:
Name: Vigan.04G380700.01
Multiple alignment
Variant Information
Position: Chr04:49786088..49788499 (+ strand)
Length: 2412
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7D0T8, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site (IPR020892)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.95,41.11,63.02,128.07,61.06,91.96,48.06,52.98
Arabidopsis thaliana homolog: AT3G62030.2
Automatic updates:
Name: NM_001254058 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP14 (GMCYP14), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:49786088..49786194 (+ strand)
Length: 107
Type: five_prime_UTR
Position: Chr04:49786195..49786254 (+ strand)
Length: 60
Type: CDS
Position: Chr04:49786459..49786650 (+ strand)
Length: 192
Type: CDS
Position: Chr04:49787120..49787261 (+ strand)
Length: 142
Type: CDS
Position: Chr04:49787373..49787461 (+ strand)
Length: 89
Type: CDS
Position: Chr04:49787601..49787655 (+ strand)
Length: 55
Type: CDS
Position: Chr04:49787783..49787868 (+ strand)
Length: 86
Type: CDS
Position: Chr04:49788169..49788321 (+ strand)
Length: 153
Type: CDS
Position: Chr04:49788322..49788499 (+ strand)
Length: 178
Type: three_prime_UTR

>Vigan.04G380700.01 class=Sequence position=Chr04:49786088..49788499 (+ strand)
TCTTTTACAT ATAAAAAGGT GCACATCCTT ATAACCCCTT TATCTCTTTC GGTCTGGTTC TTCAATATCA GCACAGCACA
GCACAGCAAG GGAAGGTTCG AGTGAGTATG GCGTCTTCAT TATCAGCTCA ATTTGTTCAT TGTCAGAACT CACTTCCACG
GGCTCAGGTC TCTGCGTCCT TTCTCTTTCT CTTTATCCTT CAATACTATC AAGTGTACGG TTTTGACTTT CCCTTTTGGA
AGCACCCAAG TCGCTTTTGT TCGATATAAT TTATGAAAGA GATTATTTTT CATACATTTT CCCATTAGGG GTTTCGGATT
GCAAAGTTGT CAACTGTTAA CAATGGTAGA AGTTTGCTGC CATTTTTTCA GGGTAATTTG AGCCGAGATG TGTCAAAGGT
TCAAAGGCCA CGTGTTGTCT GTTGCGTTAC AGGGTCACGG CTTGGTTACG GTAAAACATT GGCATCTAGG TCACACTATG
CCTTGAGGTT CCCTGTGAGG CAACAATCTG AAGCAAGGTC AATTAGATAC AGGAGCATGA CATGTGTCAG CGCCACAGAC
AATGTAAGTT TCTAATTTCA TATTTGTGGT TTGGGATTGT GTTTACTGAA ATGGTAACTA GTATTATTAC AAGAAGACAG
TGGAGAAGCT AAAGGATGAA ACCTTCAGGG TCTCTTAACT TTTACTCTTT GTTCCACTGG GCGTCCTTAC AAGAGTGTGA
AAAGAACATG GTTTTCACAA TTTCTTTACA AATTTTTTAA AATAACAAAA CAAGTTGGTA TTTGTAATTA TCAAAATTAG
AAAATAGAAG GAGAAAATAT TTTCTTAACC AAGCAGACAC TGAATAGTTC TTAAAATTTA GACCACTTGT TGATCGAATT
ATCATTCAGC ATTTGGATTT GTGATTGTTC ATACTCACGA CGCCGTGTTT GGAATCATAT TCAATGGTTT AATGTGAGAA
AGTCTGGAAA GTGCTCAATA ATCTCGTCCG CTGTGATTAA CATGATTTTC TTACATGGTT TTGTACCTTT AGGCTCTAGA
GCTTCAAGCC AAGGTGACAA CCAAGTGTTT CTTTGACGTA GAAGTTGGGG GTGAGGCTGC TGGCAGGATT GTTTTGGGCC
TATTTGGAGA TGATGTTCCC AAAACAGCTG AAAATTTCCG TGCTTTGTGC ACAGGCAAGC AATCAAGTTT TTCTGCAGCA
TTTTTCGTGT TGCCGTTGGA TTTCTACTCT GAAATGGATT GTGTAACTTT GAATTTTATA TATCAAACTT AATAATTTTT
AACAGGTGAG AAAGGATATG GTTACAAAGG AAGCTCCTTC CATCGTATAA TCAAAGATTT CATGATTCAG GGAGGAGACT
TTACGGAAGG AAATGTGAGC TCTACTTTTT GTTTGTATGC CTCCATATAT GTAGTGATGA GTGCATTTAC TTTCCAACTG
ACATGCCATG TATGTGCATC AAAGAGGCTA CTGAATTTTA TTCTCGCTTA GAATATGCTT TTATTTGCTG CAGGGAACTG
GTGGAATTAG TATCTATGGT CCAAGTTTTA AAGATGAGAG TTTTGCCTGT ATGTCTCTCT ATTCTGGCCG GATAGTAATA
TTCAATTATA TATTTTTAAT AAGATTGCCT GATTGGTATT TAAAATTCAG TTTAATTAAT CTGCTTACAT TTCTACTTTC
AACACTTTCT TGCAGTGAAG CATACTGGTC CTGGAGTTCT AAGCATGGCA AATGCTGGTC CTAATACCAA TGGTAGTCAA
TTTTTCATTT GCACTGTAAA GGTGAGAGAC ATGCACTGCC CCTTCTGATT TTTTCAAGTT ACTGATAGAT AAATTTCAAT
AAAAGTAAAC TCAAAATTCT AATCAAGCTT AACTTCAATA TCCACTGACT GGTTGTTTAT TGTAAAAGCC TCACTAGTCA
CTAGGGAATG TATTTATCTA GTCTGGTTCC AGATCTAAGA TATGATTTCT TCACAGATCT GGACCATTTT GCTGTGGATG
TTATTTATCG TATTCAAGGC TCAATTATTA ACCTAGAATT TGACTTCTAT AAAATATCAA CTGTCTTTAT TTTTTATGCA
GACTCAATGG CTAGACAATC GTCACGTTGT TTTTGGACAA GTCATTGATG GCATGGATGT TGTGAGGACA CTTGAATCCC
AGGAGACGAG TAAATTAGAT GTCCCTCGGA AGCCTTGCAG AATTGTTAAT TGCGGAGAAC TTATAGATGG TTGATCCTTA
CCCGGAATTA CTTTACTTTT CTTCTGATTT TGAGTTCATT TCCCAATGTT CTGATTGTCT CTTATTAGTC ATGTTAATAA
TGGGTTTGGA TTGTCATTAG TTGCTGCCTA ATTTCCCATA TTTTGTATGA CAAGACTCGT GCTTAATCTT TAGAACAATA
ATATTCTCAT TT

>Vigan.04G380700.01
TCTTTTACAT ATAAAAAGGT GCACATCCTT ATAACCCCTT TATCTCTTTC GGTCTGGTTC TTCAATATCA GCACAGCACA
GCACAGCAAG GGAAGGTTCG AGTGAGTATG GCGTCTTCAT TATCAGCTCA ATTTGTTCAT TGTCAGAACT CACTTCCACG
GGCTCAGGGT AATTTGAGCC GAGATGTGTC AAAGGTTCAA AGGCCACGTG TTGTCTGTTG CGTTACAGGG TCACGGCTTG
GTTACGGTAA AACATTGGCA TCTAGGTCAC ACTATGCCTT GAGGTTCCCT GTGAGGCAAC AATCTGAAGC AAGGTCAATT
AGATACAGGA GCATGACATG TGTCAGCGCC ACAGACAATG CTCTAGAGCT TCAAGCCAAG GTGACAACCA AGTGTTTCTT
TGACGTAGAA GTTGGGGGTG AGGCTGCTGG CAGGATTGTT TTGGGCCTAT TTGGAGATGA TGTTCCCAAA ACAGCTGAAA
ATTTCCGTGC TTTGTGCACA GGTGAGAAAG GATATGGTTA CAAAGGAAGC TCCTTCCATC GTATAATCAA AGATTTCATG
ATTCAGGGAG GAGACTTTAC GGAAGGAAAT GGAACTGGTG GAATTAGTAT CTATGGTCCA AGTTTTAAAG ATGAGAGTTT
TGCCTTGAAG CATACTGGTC CTGGAGTTCT AAGCATGGCA AATGCTGGTC CTAATACCAA TGGTAGTCAA TTTTTCATTT
GCACTGTAAA GACTCAATGG CTAGACAATC GTCACGTTGT TTTTGGACAA GTCATTGATG GCATGGATGT TGTGAGGACA
CTTGAATCCC AGGAGACGAG TAAATTAGAT GTCCCTCGGA AGCCTTGCAG AATTGTTAAT TGCGGAGAAC TTATAGATGG
TTGATCCTTA CCCGGAATTA CTTTACTTTT CTTCTGATTT TGAGTTCATT TCCCAATGTT CTGATTGTCT CTTATTAGTC
ATGTTAATAA TGGGTTTGGA TTGTCATTAG TTGCTGCCTA ATTTCCCATA TTTTGTATGA CAAGACTCGT GCTTAATCTT
TAGAACAATA ATATTCTCAT TT

>Vigan.04G380700.01
ATGGCGTCTT CATTATCAGC TCAATTTGTT CATTGTCAGA ACTCACTTCC ACGGGCTCAG GGTAATTTGA GCCGAGATGT
GTCAAAGGTT CAAAGGCCAC GTGTTGTCTG TTGCGTTACA GGGTCACGGC TTGGTTACGG TAAAACATTG GCATCTAGGT
CACACTATGC CTTGAGGTTC CCTGTGAGGC AACAATCTGA AGCAAGGTCA ATTAGATACA GGAGCATGAC ATGTGTCAGC
GCCACAGACA ATGCTCTAGA GCTTCAAGCC AAGGTGACAA CCAAGTGTTT CTTTGACGTA GAAGTTGGGG GTGAGGCTGC
TGGCAGGATT GTTTTGGGCC TATTTGGAGA TGATGTTCCC AAAACAGCTG AAAATTTCCG TGCTTTGTGC ACAGGTGAGA
AAGGATATGG TTACAAAGGA AGCTCCTTCC ATCGTATAAT CAAAGATTTC ATGATTCAGG GAGGAGACTT TACGGAAGGA
AATGGAACTG GTGGAATTAG TATCTATGGT CCAAGTTTTA AAGATGAGAG TTTTGCCTTG AAGCATACTG GTCCTGGAGT
TCTAAGCATG GCAAATGCTG GTCCTAATAC CAATGGTAGT CAATTTTTCA TTTGCACTGT AAAGACTCAA TGGCTAGACA
ATCGTCACGT TGTTTTTGGA CAAGTCATTG ATGGCATGGA TGTTGTGAGG ACACTTGAAT CCCAGGAGAC GAGTAAATTA
GATGTCCCTC GGAAGCCTTG CAGAATTGTT AATTGCGGAG AACTTATAGA TGGTTGA

>Vigan.04G380700.01
MASSLSAQFV HCQNSLPRAQ GNLSRDVSKV QRPRVVCCVT GSRLGYGKTL ASRSHYALRF PVRQQSEARS IRYRSMTCVS
ATDNALELQA KVTTKCFFDV EVGGEAAGRI VLGLFGDDVP KTAENFRALC TGEKGYGYKG SSFHRIIKDF MIQGGDFTEG
NGTGGISIYG PSFKDESFAL KHTGPGVLSM ANAGPNTNGS QFFICTVKTQ WLDNRHVVFG QVIDGMDVVR TLESQETSKL
DVPRKPCRIV NCGELIDG*