GBrowse Details

Vigan.04G378600.01

Basic Information:
Name: Vigan.04G378600.01
Multiple alignment
Variant Information
Position: Chr04:49633183..49634660 (+ strand)
Length: 1478
Functional Information:
Description: Similar to Uncharacterized protein. [C7S8D5, Glycine max]
GO: Molecular Function: manganese ion binding (GO:0030145)
Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro: Germin (IPR001929)
Cupin 1 (IPR006045)
RmlC-like cupin domain (IPR011051)
RmlC-like jelly roll fold (IPR014710)
Germin, manganese binding site (IPR019780)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.06,1.37,42.11,24.80,78.42,49.55,392.65,34.79
Arabidopsis thaliana homolog: AT1G09560.1
Structure :
Position: Chr04:49633183..49633399 (+ strand)
Length: 217
Type: five_prime_UTR
Position: Chr04:49633400..49633511 (+ strand)
Length: 112
Type: CDS
Position: Chr04:49633905..49634449 (+ strand)
Length: 545
Type: CDS
Position: Chr04:49634450..49634660 (+ strand)
Length: 211
Type: three_prime_UTR

>Vigan.04G378600.01 class=Sequence position=Chr04:49633183..49634660 (+ strand)
TGACTTAATA TGATTACAAT ATTCTTTCCT TCTCCATCTA CTCTCTACCG CTTGTGATAA ATACCGCAAC CACGCCATCA
CTTCCTTCAA ACTTCCACCT CATACAAAAC AATTCCAACA TACTTTTCTT CTCTTTTCTC CATTCGTTCT TCTTAAAACT
CTCTGCTTTT TTTTCTCTCC TTTCATTCCC AACTTCACTT CTCTTACATA CTCTGATATG AAGCTCACAG CCTCGCTCCT
ACTATTCACT TTTGCTTTGG TGTTAACCAC CACCACTGCA TCAGATCCTG ATCCTCTTCA AGACCTCTGT GTCGCTGATC
TTGCCTCAGG TACTCTTTTT CTATCAAAGA TGCCAACTTT CATGCACACC TTCACTTTCC ACTCAATAAT TATATTTCAT
CCTTTTTTCT TAATCAATTC ATTCTCCCAG ACCTATCAAC TCCTTTGGTT TTGCTTTTTG ATCAAAAGTT CCTCACTTGA
TTAACTTTTC CCTTCCCCTC ACCCGTTTCT ACAATTCAAC ATTAAAATAA ACTTCTCACC AACTCCCAGT AATCATTTTG
CATTTCTGTA GCATGATTGG TGCACTGAAC TTTTGATTCG TGTATAATTT GATAGTGAGT TTTTTCTATT TTGTATAATA
GACAGACAGA ATTTGACTAC ACGAGAATTG TGATCTGCAT AACATTTTTT TGTGTGTGTG TGTGCAATTC TGATTGTTAC
AGCTGTTAAA GTGAATGGAT TCACCTGCAA AGATGCTGCG AAGGTAAATG CGACTGATTT CTTCTCAAAC ATATTAGCGA
AAGCAGGTGC GACAAACAAC ACCTATGGGT CCTTGGTGAC TGCAGCCAAT GTTCAGAAAA TCCCAGGACT GAACACCCTT
GGTGTATCTA TGTCACGAAT TGACTATGCT CCAGGTGGGA TCAACCCTCC TCACACGCAC CCACGTGCCA CCGAGATTGT
GTTTGTGATG GAAGGAACAC TCGATGTGGG ATTCATAACC ACAGCCAATG TGCTCATATC AAAGACCATC ACCAAGGGTG
AGACTTTTGT GTTCCCAAAA GGCTTAGTTC ATTTCCAAAA GAACAATGCG AAGGAACCTG CTTCGGTCAT TGCAGCCTTC
AACAGTCAAT TGCCTGGCAC ACAGTCCATT GCTCTCACCC TCTTTACAGC CACACCACCT GTTCCAGACA ATGTCTTGAC
CAAGGCCTTC CAGATTGGTA CCAAGGAGGT TGAGAAAATC AAGACCAGGC TTGCACCTAA GAAATAATTT ATGTTTGAAT
CTGCTTCTGT TATCTCTGCC ATTGCTCTTT CACGCTTCTT CTGTCTTCTC CTTGTTGCTT TACGATTCAT GTTTGTTGGA
AAATCATAAA GGATTTAGAA TGTGAGTGAA TGGGGTATAT TCATTTCTTT GATAATTGCA ATTTGAAATA TCCACGCACG
CTTCTTATTT TCTTAATAAA ATCTTTCATT AGTGGTAA

>Vigan.04G378600.01
TGACTTAATA TGATTACAAT ATTCTTTCCT TCTCCATCTA CTCTCTACCG CTTGTGATAA ATACCGCAAC CACGCCATCA
CTTCCTTCAA ACTTCCACCT CATACAAAAC AATTCCAACA TACTTTTCTT CTCTTTTCTC CATTCGTTCT TCTTAAAACT
CTCTGCTTTT TTTTCTCTCC TTTCATTCCC AACTTCACTT CTCTTACATA CTCTGATATG AAGCTCACAG CCTCGCTCCT
ACTATTCACT TTTGCTTTGG TGTTAACCAC CACCACTGCA TCAGATCCTG ATCCTCTTCA AGACCTCTGT GTCGCTGATC
TTGCCTCAGC TGTTAAAGTG AATGGATTCA CCTGCAAAGA TGCTGCGAAG GTAAATGCGA CTGATTTCTT CTCAAACATA
TTAGCGAAAG CAGGTGCGAC AAACAACACC TATGGGTCCT TGGTGACTGC AGCCAATGTT CAGAAAATCC CAGGACTGAA
CACCCTTGGT GTATCTATGT CACGAATTGA CTATGCTCCA GGTGGGATCA ACCCTCCTCA CACGCACCCA CGTGCCACCG
AGATTGTGTT TGTGATGGAA GGAACACTCG ATGTGGGATT CATAACCACA GCCAATGTGC TCATATCAAA GACCATCACC
AAGGGTGAGA CTTTTGTGTT CCCAAAAGGC TTAGTTCATT TCCAAAAGAA CAATGCGAAG GAACCTGCTT CGGTCATTGC
AGCCTTCAAC AGTCAATTGC CTGGCACACA GTCCATTGCT CTCACCCTCT TTACAGCCAC ACCACCTGTT CCAGACAATG
TCTTGACCAA GGCCTTCCAG ATTGGTACCA AGGAGGTTGA GAAAATCAAG ACCAGGCTTG CACCTAAGAA ATAATTTATG
TTTGAATCTG CTTCTGTTAT CTCTGCCATT GCTCTTTCAC GCTTCTTCTG TCTTCTCCTT GTTGCTTTAC GATTCATGTT
TGTTGGAAAA TCATAAAGGA TTTAGAATGT GAGTGAATGG GGTATATTCA TTTCTTTGAT AATTGCAATT TGAAATATCC
ACGCACGCTT CTTATTTTCT TAATAAAATC TTTCATTAGT GGTAA

>Vigan.04G378600.01
ATGAAGCTCA CAGCCTCGCT CCTACTATTC ACTTTTGCTT TGGTGTTAAC CACCACCACT GCATCAGATC CTGATCCTCT
TCAAGACCTC TGTGTCGCTG ATCTTGCCTC AGCTGTTAAA GTGAATGGAT TCACCTGCAA AGATGCTGCG AAGGTAAATG
CGACTGATTT CTTCTCAAAC ATATTAGCGA AAGCAGGTGC GACAAACAAC ACCTATGGGT CCTTGGTGAC TGCAGCCAAT
GTTCAGAAAA TCCCAGGACT GAACACCCTT GGTGTATCTA TGTCACGAAT TGACTATGCT CCAGGTGGGA TCAACCCTCC
TCACACGCAC CCACGTGCCA CCGAGATTGT GTTTGTGATG GAAGGAACAC TCGATGTGGG ATTCATAACC ACAGCCAATG
TGCTCATATC AAAGACCATC ACCAAGGGTG AGACTTTTGT GTTCCCAAAA GGCTTAGTTC ATTTCCAAAA GAACAATGCG
AAGGAACCTG CTTCGGTCAT TGCAGCCTTC AACAGTCAAT TGCCTGGCAC ACAGTCCATT GCTCTCACCC TCTTTACAGC
CACACCACCT GTTCCAGACA ATGTCTTGAC CAAGGCCTTC CAGATTGGTA CCAAGGAGGT TGAGAAAATC AAGACCAGGC
TTGCACCTAA GAAATAA

>Vigan.04G378600.01
MKLTASLLLF TFALVLTTTT ASDPDPLQDL CVADLASAVK VNGFTCKDAA KVNATDFFSN ILAKAGATNN TYGSLVTAAN
VQKIPGLNTL GVSMSRIDYA PGGINPPHTH PRATEIVFVM EGTLDVGFIT TANVLISKTI TKGETFVFPK GLVHFQKNNA
KEPASVIAAF NSQLPGTQSI ALTLFTATPP VPDNVLTKAF QIGTKEVEKI KTRLAPKK*