GBrowse Details

Vigan.04G373400.01

Basic Information:
Name: Vigan.04G373400.01
Multiple alignment
Variant Information
Position: Chr04:49191103..49194300 (+ strand)
Length: 3198
Functional Information:
Description: Similar to zinc finger matrin-type protein 2. [XP_008453724.1, Cucumis melo]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, U1-type (IPR003604)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.38,11.73,16.21,19.60,20.79,11.64,12.77,16.73
Arabidopsis thaliana homolog: AT3G05760.1
Automatic updates:
Name: NM_001251092 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527057 (LOC100527057), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:49191103..49191215 (+ strand)
Length: 113
Type: five_prime_UTR
Position: Chr04:49191216..49191236 (+ strand)
Length: 21
Type: CDS
Position: Chr04:49191345..49191425 (+ strand)
Length: 81
Type: CDS
Position: Chr04:49191524..49191551 (+ strand)
Length: 28
Type: CDS
Position: Chr04:49191626..49191708 (+ strand)
Length: 83
Type: CDS
Position: Chr04:49191900..49191932 (+ strand)
Length: 33
Type: CDS
Position: Chr04:49192675..49192753 (+ strand)
Length: 79
Type: CDS
Position: Chr04:49192849..49192901 (+ strand)
Length: 53
Type: CDS
Position: Chr04:49193027..49193087 (+ strand)
Length: 61
Type: CDS
Position: Chr04:49193456..49193535 (+ strand)
Length: 80
Type: CDS
Position: Chr04:49193734..49193820 (+ strand)
Length: 87
Type: CDS
Position: Chr04:49193821..49194300 (+ strand)
Length: 480
Type: three_prime_UTR

>Vigan.04G373400.01 class=Sequence position=Chr04:49191103..49194300 (+ strand)
AACTAGGGTT TCATATCATC GTAATGTGCC CTTTATTTCA ATCAATTATC AAATAGCTTC GGTGATCATT GTAACTGCCT
CTGCATTTGG TTTTCATTTA TTTGCTTGTA TCAATGTCTA ACACCAGCAA CAATGTAAGT GCAGAATTTT GGAATCTCCC
CGTTTCATCT CCACAATCCG TAGATGGTTT CGGAAGATTA TTTTTTGTTT CTCTGATTGT CTACATATTT GACTTGAATC
AGGTCGTTGG AGTTGACAAC ACATTCAGAA GAAAATTTGA TCGAGAAGAG TACCTGGAAC GAGCACGGGA GCGCGAGAGA
CAGGTGCGTT GGTGTTTCTT CTATACCCTT TTTTATGCTT CTGATTTTAA AATAATTTAG GTTGCTTAAT TTTTCGTGTT
TGTGTGTTTG ATTTTGAACA GGAGGAGGAG GGTCGATCGA AACCTAAAGG TAAGTTACCT AATTCGTATT GAAGTTGGAG
TTATGTTTGC TTGAGTGACA ACTACAACAT CCTATTGGTG CAGCTAAAGG TCCTCCCGTG CAGAGGAAGC CCTTGAAGCA
CAGAGATTAT GAAGTGGACC TGGAATCTCG CTTGGGCAAG ACTCAGGTAT GTTAGTGTCA ACAGTGATTA CTAAGTTCAA
TGCTCTAATC TAAATGAGTT TCAAACATCT ATACAGTATT CTGTTAAATA TATAACCATT GCATATTGTA GGTCACCAGG
GGTAACATCC ACTGGTACCA AAATTTTATC ACATAATCCT GCTATTCTGC TGTACTGACA ACTTGCAAAC TTTGCAGGTT
GTTACACCGG TTGCACCACT AAGTCAGCAG GTACTTGCTT TTAACTTTTT CGTATTTGTT TTTCGTATTT GTATTCTGGC
ACTTTTGGAT TAGAAAAAAG GTTGTTCTTT GCTCATTTTG ATTTCTGGCC AAGTTTAAAT TCTTCTTGTT GATCTTAGTT
TCTTTTTTTA GGGGGATATG TTGTGTGTTT AGGACGAGAG TCATTTAGTT ACACACAGGT ACACTTTTTT AAAATGTATT
TCAAAATTTT CTAGTTACAT GTTGAACTTA AGTGATAACG TTTTTGTTTC ATTCATGCCT AGTGATGCAT AAGTCGTGTG
TTTTGACGTA ACACATGTCC TTAAAAATTA ATAATTGCCA TAATTCTGGC TGTTAATTTC CAGGAGAGCA AGACATTACT
GAACTCTCCT TAGTAAAGCA CTGTTAGAAA TCTATGCAAT TGTGACACTC ACAAATGATT CCCATTCTTT TTTCTTTGAT
CCATAACCAA TGCGAATGCC TTTTGGTGCA CAATTTGCCT ATGATATCCA GGTTTAGTTA AATAAAACAT ATTCGCTGAA
AATGGACATC TTCACTGCCT CTTGCATAGG GAAATTTTCA CCCTTGTGAT GTGGTTGTTA GTTGTATATA TGTTTGTTAG
TTGTGTATAT GTGCCAAGGG ATACTTGGTA TAGGACTTAT TAAATGATTT CACAGTTTTT GTTTGCTATC TGGATGACCT
TTTTGTTTCA CCGATGATTT ACAATATTTG GATTTAATTA TATTTATTGT AGGCTGGATA CTACTGCTCA GTTTGTGAGT
GTGTAGTTAA GGACTCTGCA AACTACTTGG ATCATATTAA TGGAAAGAAA CGTATGTAGT CTTTTTGCCA TGCTCCTCTA
ATTTTTCTAT GTAATTGCTT TAAGTGCCTG TTGTTCGCTC ATATTTATTA TATTGTTGTC CCTTAGATCA AAGAGCTTTG
GGCATGTCTA TGCGAGTAGA ACGTGCTTCT CTCAAACAGG TGCAAATTAA GATTGCCTTC TATTAGCTAT GAAGTTAAAT
GATAAATTCC ATACCTTTGT GTGTCATTTA GTTTCTACAG TTATATATGT TCCTCTGCAC GTAGTAAATC TTTTAATGGA
ACAGGTCCAG GAAAGATTTG AAGTTCTTAA GAAACGGAAA GATGTTGGTA GCTTCACAGA GCAAGGTAAG ACATTGGATT
GGAGAAGGGT TGACTGTTAT TTCCATAGAA CCAGGCAACT TTAAAGTCAG TGTCTAATTT TTTCTGCATG GCCTGAAATT
GTAGAAGTTT AACTGATCTT TCGTTTCAGT GATGGGTTTT GAACTAAAAT TGAGGGAATC ATATAACAAT GTGGTAATTT
TAAATGATTA AACATATGAT TCCTTAAATA CTAATGTTTT CTATGGTCTG ATTTTTTAGG AGAGTAATAT GTTTGCTAAA
CTTATTCATG TGAAATTGTC AAAAGATTTG GCAGCTTCTC CACACCATAG TGCAGCACTG TTTAAGATGG ACTTGATTCT
TGAATATGGA AAATAACTTC TATTTTTTCA CAGATCTTGA TGAACGGATT TTAAAACAAC AACAAGAAGA GGAAGAAAAA
AAACGTCTAC GAAGAGAAAA GAAAAAGGAA AAGGTAAGAC TCTGTGTACA GTTGAATAAG CCTTTTTGTC ATCCTCCCCG
TACCATCAAA GTAAATGTTT CTTTATGTCA TTTACTTGTT TTAGCATTTA ATAATTACAT CCATCTTTCT AATAATGATT
TATAATGTTA TCTTAACAAA TGAATATTGC TTTTTATTTC TCACAACTCA GTGTTAAATT TTTGAATTCA GAAGGAAAAA
GCAGTGGAAG AACCTGAAAT TGATCCTGAT GTTGCTGCCA TGATGGGGTT TGGAGGTTTC CGGTCATCCA AGAAGTGATA
ACATTCTGCA TGCGGGATGA ATTGTATGAG ATTTGGAATA TTTATTTCAC ATTGGTAAGC TGAATCCTAT ATCTTCCATG
CTCAATCTGA GAGGCATAAG CGGAATAATG GAACAGTGGA TCCCAAACAG TAGTATGCTT GGTGATATTC GATCATGTGC
TTCGGTTGAT TCATGTATAT TTCTTCTGAT GGCTAACCTG ATGTATTATA CAGACAGAGC TCGGTAATTG TCTTTTCCTC
TATGTTCGAA CCATAGTGGG GGAGTCAACC GCCGTAGCTA ACGAAATTAA ATATAGACAT TCGATTCAAT CTGGGTTGTT
ACTGTTTTTT GGGTGTAGTT GTTTTTATTG AAAATAGAAA TATAACTACA ATTTTCTGCA TTATCTTTGG TTATACAATA
CTTGTTGGCC AGGATACTCG AACCTGCATG CACTTGCCAT GGTCATGCGT TCTAATTCCA TTGACTTTTG GTACACAA

>Vigan.04G373400.01
AACTAGGGTT TCATATCATC GTAATGTGCC CTTTATTTCA ATCAATTATC AAATAGCTTC GGTGATCATT GTAACTGCCT
CTGCATTTGG TTTTCATTTA TTTGCTTGTA TCAATGTCTA ACACCAGCAA CAATGTCGTT GGAGTTGACA ACACATTCAG
AAGAAAATTT GATCGAGAAG AGTACCTGGA ACGAGCACGG GAGCGCGAGA GACAGGAGGA GGAGGGTCGA TCGAAACCTA
AAGCTAAAGG TCCTCCCGTG CAGAGGAAGC CCTTGAAGCA CAGAGATTAT GAAGTGGACC TGGAATCTCG CTTGGGCAAG
ACTCAGGTTG TTACACCGGT TGCACCACTA AGTCAGCAGG CTGGATACTA CTGCTCAGTT TGTGAGTGTG TAGTTAAGGA
CTCTGCAAAC TACTTGGATC ATATTAATGG AAAGAAACAT CAAAGAGCTT TGGGCATGTC TATGCGAGTA GAACGTGCTT
CTCTCAAACA GGTCCAGGAA AGATTTGAAG TTCTTAAGAA ACGGAAAGAT GTTGGTAGCT TCACAGAGCA AGATCTTGAT
GAACGGATTT TAAAACAACA ACAAGAAGAG GAAGAAAAAA AACGTCTACG AAGAGAAAAG AAAAAGGAAA AGAAGGAAAA
AGCAGTGGAA GAACCTGAAA TTGATCCTGA TGTTGCTGCC ATGATGGGGT TTGGAGGTTT CCGGTCATCC AAGAAGTGAT
AACATTCTGC ATGCGGGATG AATTGTATGA GATTTGGAAT ATTTATTTCA CATTGGTAAG CTGAATCCTA TATCTTCCAT
GCTCAATCTG AGAGGCATAA GCGGAATAAT GGAACAGTGG ATCCCAAACA GTAGTATGCT TGGTGATATT CGATCATGTG
CTTCGGTTGA TTCATGTATA TTTCTTCTGA TGGCTAACCT GATGTATTAT ACAGACAGAG CTCGGTAATT GTCTTTTCCT
CTATGTTCGA ACCATAGTGG GGGAGTCAAC CGCCGTAGCT AACGAAATTA AATATAGACA TTCGATTCAA TCTGGGTTGT
TACTGTTTTT TGGGTGTAGT TGTTTTTATT GAAAATAGAA ATATAACTAC AATTTTCTGC ATTATCTTTG GTTATACAAT
ACTTGTTGGC CAGGATACTC GAACCTGCAT GCACTTGCCA TGGTCATGCG TTCTAATTCC ATTGACTTTT GGTACACAA

>Vigan.04G373400.01
ATGTCTAACA CCAGCAACAA TGTCGTTGGA GTTGACAACA CATTCAGAAG AAAATTTGAT CGAGAAGAGT ACCTGGAACG
AGCACGGGAG CGCGAGAGAC AGGAGGAGGA GGGTCGATCG AAACCTAAAG CTAAAGGTCC TCCCGTGCAG AGGAAGCCCT
TGAAGCACAG AGATTATGAA GTGGACCTGG AATCTCGCTT GGGCAAGACT CAGGTTGTTA CACCGGTTGC ACCACTAAGT
CAGCAGGCTG GATACTACTG CTCAGTTTGT GAGTGTGTAG TTAAGGACTC TGCAAACTAC TTGGATCATA TTAATGGAAA
GAAACATCAA AGAGCTTTGG GCATGTCTAT GCGAGTAGAA CGTGCTTCTC TCAAACAGGT CCAGGAAAGA TTTGAAGTTC
TTAAGAAACG GAAAGATGTT GGTAGCTTCA CAGAGCAAGA TCTTGATGAA CGGATTTTAA AACAACAACA AGAAGAGGAA
GAAAAAAAAC GTCTACGAAG AGAAAAGAAA AAGGAAAAGA AGGAAAAAGC AGTGGAAGAA CCTGAAATTG ATCCTGATGT
TGCTGCCATG ATGGGGTTTG GAGGTTTCCG GTCATCCAAG AAGTGA

>Vigan.04G373400.01
MSNTSNNVVG VDNTFRRKFD REEYLERARE RERQEEEGRS KPKAKGPPVQ RKPLKHRDYE VDLESRLGKT QVVTPVAPLS
QQAGYYCSVC ECVVKDSANY LDHINGKKHQ RALGMSMRVE RASLKQVQER FEVLKKRKDV GSFTEQDLDE RILKQQQEEE
EKKRLRREKK KEKKEKAVEE PEIDPDVAAM MGFGGFRSSK K*