GBrowse Details

Vigan.04G373300.01

Basic Information:
Name: Vigan.04G373300.01
Multiple alignment
Variant Information
Position: Chr04:49181528..49185316 (- strand)
Length: 3789
Functional Information:
Description: Similar to Uncharacterized protein. [E3W9C1, Glycine max]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Cellular Component: endoplasmic reticulum (GO:0005783)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
Molecular Function: isomerase activity (GO:0016853)
InterPro: Thioredoxin (IPR005746)
Disulphide isomerase (IPR005788)
Endoplasmic reticulum, protein ERp29, C-terminal (IPR011679)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:42.80,37.56,18.16,3.10,28.31,29.75,16.07,10.97
Arabidopsis thaliana homolog: AT2G47470.1
Automatic updates:
Name: NM_001249384 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein disulfide isomerase-like protein (PDIS-2), mRNA.
PubMed ID: 17181539 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:49181528..49181749 (- strand)
Length: 222
Type: three_prime_UTR
Position: Chr04:49181750..49181815 (- strand)
Length: 66
Type: CDS
Position: Chr04:49182373..49182472 (- strand)
Length: 100
Type: CDS
Position: Chr04:49182637..49182761 (- strand)
Length: 125
Type: CDS
Position: Chr04:49182841..49182997 (- strand)
Length: 157
Type: CDS
Position: Chr04:49183095..49183186 (- strand)
Length: 92
Type: CDS
Position: Chr04:49183313..49183340 (- strand)
Length: 28
Type: CDS
Position: Chr04:49183452..49183569 (- strand)
Length: 118
Type: CDS
Position: Chr04:49184463..49184518 (- strand)
Length: 56
Type: CDS
Position: Chr04:49184640..49184737 (- strand)
Length: 98
Type: CDS
Position: Chr04:49184837..49184921 (- strand)
Length: 85
Type: CDS
Position: Chr04:49185017..49185180 (- strand)
Length: 164
Type: CDS
Position: Chr04:49185181..49185316 (- strand)
Length: 136
Type: five_prime_UTR

>Vigan.04G373300.01 class=Sequence position=Chr04:49181528..49185316 (- strand)
AGAAAAGCAA ATCCGAGGGG AGAAGAGGGG AAAATGAAAA GTTGAGAGTA GTGACAGAGA GGGTAGCGAG AACTTTCACA
TAGTTACGAA ACACATAAAA ACATCATCAG AGATCGACGA GGAAACTGAG CGAACAATGT GGAGCTCCAC TAAGAGGATG
ACGGTGGCCG TTGCCGCCGT AACGCTCATG ATTTTTCTCT CATCGGCTTC AGCCGACGAC GTCGTTGCAC TCACCCAGAA
CACCTTCGAC AACGAGGTTG GCAAGGATCG TGCCGCTCTC GTCGAGTTTT ACGCCCCTTG GTATGTGTGA ATCGCGATTC
TCTAACCTCA CGCGCCTCCA TTTGATTGCT TATATCATTG TGAATTGTGG AATCTAATTG TGTTTTCCAT GTCAGGTGTG
GACATTGTAA AAAGCTTGCC CCGGAGTACG AACAACTCGG AACGAGTTTC AGGAAAACGA AGTCGGTTTT GATTGCGAAG
GTTGGTTGCT AGCGTTTTTC TAATGTGCTT TAGATTTTAT TGTCTTTCGT TTTATTTTAG GATCAAAAGT TTATTTATAT
AGTTTGTATC TTTTGATAGG TGGATTGTGA TGAACATAAA AGCGTTTGCA GTAAATACGG GGTTTCTGGT TACCCTACCA
TTCAATGGTT TCCCAAGGGA TCTCTACAGC CAAAAAAGTG AGCACTTTGC CTTTTTTGAC ACTTTTTTTC CTATTCCATA
GAAAATGTCA GAATATTCTT GTTCTTAACT CATGGCTATT CATTGCATTT GATATCCGCA TTTGATTGAC TTCTCCAGGT
ATGAAGGTGC ACGGACTGCG GAAGCCCTTG CTGCGTTTGT GAACCTTGAA GCAGGTATAA ATAATGCCTT GCAGTGTCCA
TTTTCTAGAT GTAAATATGG TTTGTAACGA GTTAATTGAT TCAAATGCTG ATGTTGAGGT TGTGCCTTTA GAATACTTTG
AATTATTTTT GTTATTAATT TGGCAAGGTG ATTTGAAGAT ATTAATGAAC TTGCTTTTCC TGGATTGTTG GACTTATAAA
TATATTTTTT CAAGAATGTT GAAGTAATAT TTTTTTGGTG CACGTGTTAA GAAAGCTACC CCTTCACCCC ATTGCATCTG
TTTGTAACTA AATGAATTTG TTTCATTCAT GCCTTACTGA GTGACAGTGG TTGAAATTAT TATCCAGAAT TATCATGACT
TTGGGTCACG CTACCTAATA CAATGAGAGT CTATAAGGTA AAAGTGTTTC TGAGAGCTTG TCTACGGGAA CGATAAAGTT
TTTTTTTTCT TTTTTTTCAG TACAAAGGTT TTAAAACACT TATAGCTTTG TATTGTATCT GAACTGACTC TGATATTTGG
CAATACAAAA TAACCATCTC ATGTTTTTTC CTCTTTTATT GCTACAGTAC TGTCTCTATT GTAGTATGCT CTCACGATGT
TGTCTTTCAT TCTTTTTTCT GCATTGCATT TTTAGAAATG TTAGCAACAT ACAATCTTGA ACACACTCTT TATTATTGCC
TAAATTTTAT TGAATTCACA CAATTTTGTG GGTTTCACAC TTTATTTATG GAACCCCACT CATGGCTTAC AATTTTCAAT
CAATTTTCAC TAACAGTAAA GAGAGTAAGA GAAATAGTGT GTTGCTTGAA CTTCTTTGGC ATTTTTAGTG TCTCTATATT
CTTGTATCAT GTCTTTGCAT AATATTAACT CAATTTAGCA TTGATATCAA ATGTCTTGTT AATGCAGGTA CTAATGTGAA
GATAGCTTCT GCCCCATCCA GCGTGGTAAT TCTCTCCCCA GATAACTTTG ATGAGGTTGT CTTGGATGAA ACAAAAGATG
TTCTGGTGGA ATTCTATGCA CCATGGTAAC TATACCTAGA TGATCTGCAA AACTTTATTA TATCTGTAGA TTTTTTTTTT
TCATTTTAAA TTTTTATTTT CAATATTTTT CTTGATAAAT TTATAATGTT TTACAGGTGT GGTCACTGCA AGGCTCTTGC
CACTGTAAGG ATGTTCTTCG GTCCTTAGAC TCCTATTATA GCTTATGGTT ATTGTATCTT AATAAGCTTG ACCTGCCCGT
GATTATGTCA AAGGTCTACC CTGTCCTGAT AAAGTTTTTT CTATTTTCAG ACTTATGAAA AGGTTGCTGC AGCATTTAAC
CTGGATGAAG AAGTAGTTAT AGCCAATGTT GATGCTGACA AGTATAAGAA TTTGGCTGAG AGGTGAGTGC GGTGGCATTT
TGATTTATCT CCTATTTAAA ATAGGTTGAT ATTGTATTTA AGAAATACAC GTGCCTAATT TGGAAATTTT CCAATACAGA
TATGGTGTTA CTGGCTACCC TACGCTGAAG TTTTTCCCTA AGAGCAATAA AGCTGGTGAA GATTATAGTG GTGGTCGTAG
TTTGGATGAC TTTGTAGCCT TCATCAATGA GAAATGTGGT ACATACCGTG ATGGGAAAGG ACAGCTTAGT TCTAAAGTTA
GTTAATCACA TATGTTAATT AAAAGGAAAG AGACTGGAAT AATATCATTA TAATGACTAT CTATTCTTAG TGCAGGCTGG
TATTGTAGAA TCTCTGGATG GCTTGGTGAA GGAGTTTGTG AGTGCTGATG ATAATGACAA GAAGGCAGTA TATTCCCGGC
TTGAGGAGGA AGTTAAGAAG CTCAAGGGTT CTGCTGCCAG GTTTGAATGA TTTTATGGTT CCGTTCCGCT ATGTGATGGT
TTCTCTGGTT TTATTTTCAA TTGTGATTAT TGTGAAGCCA TAATTGTTTA CCCCATTTCT TTCTTTAATT ATAAAGATTT
ACTTCTTTGT TTTTATGACA TTTGTCCTCT TCTGTTATGG CCAGATATGG CAGCCTCTAC TTAAAACTTG CCAAGAAGAG
TATGGAAAAG GGTACGGACT ATGCAAAGAA TGAAATTCTT CGTCTAGACC GCATGCTTGA GAAGGTAATC GATGACTTTC
TCATGTTTGA TATCATAAAT GTTTTGGAGA TTAATGTAAT CAAGTGCATA TCATAATGTA TTATTGAGCA TGTTCCACTC
CATGGAATGG AATAGAATGG AAACTATTTT CTTGTCATGT CCATGCTGCA TAGCACAGCA AGATAAAGAT AATGAGTATA
TTGGTAGAAC CCTTTGCTAC TCTTATTTAT TAAACAAGGT GACCAAGCCT TTCCTTGTAC TTTCCGTTGT TTTGCTTCAA
AAGAATTTGA TATGATGGAA ATGGAATTCT CTTGCTGGAG TCTTCAACGG AACCAAGTTT TTTAATTTCA ATTATTCAAA
TGCTTATTAC ATTTTCAATT TACAATTAAG ACATCTTTCA TTTCACTGCA CTATTGGTGA TTATGTAAAT TGTAAATGAT
GTACTTGGAT TTTGTTCATT GAAGGTTTAG GTAAGAGTGT GATGGTCTGA TATGTAATCA ATTGGTCCAA ATCTGTCTTT
TAAACTATAG TTAGTAATTT GGATTACTCC TCTGATTGAA GTTTTCTGTC TTTTGAAGCA GTCAATCAGC CCAGCAAAAG
CAGATGAATT CACTCTGAAG AAGAACATCT TATCAACGTT TGCTTGATCT TACTGTGATA GAAGAGTAGT TTATTTCAGT
TATGCAGGGA GACATAATTT GTAATTCCCC AGTTTCTAGG TGTTATCACC CTAGTTTTCT AGATGTCCCA CTTCTTATAA
ATAGTATTTC AAGAACATTT TTGTACTGAT CACTTACCGT GTCTAAAAAT TAAAACAGAA GTACAATTTT CATTAAGAAA
TCATCATACT CTATATGTTG CTCAGGCTA

>Vigan.04G373300.01
AGAAAAGCAA ATCCGAGGGG AGAAGAGGGG AAAATGAAAA GTTGAGAGTA GTGACAGAGA GGGTAGCGAG AACTTTCACA
TAGTTACGAA ACACATAAAA ACATCATCAG AGATCGACGA GGAAACTGAG CGAACAATGT GGAGCTCCAC TAAGAGGATG
ACGGTGGCCG TTGCCGCCGT AACGCTCATG ATTTTTCTCT CATCGGCTTC AGCCGACGAC GTCGTTGCAC TCACCCAGAA
CACCTTCGAC AACGAGGTTG GCAAGGATCG TGCCGCTCTC GTCGAGTTTT ACGCCCCTTG GTGTGGACAT TGTAAAAAGC
TTGCCCCGGA GTACGAACAA CTCGGAACGA GTTTCAGGAA AACGAAGTCG GTTTTGATTG CGAAGGTGGA TTGTGATGAA
CATAAAAGCG TTTGCAGTAA ATACGGGGTT TCTGGTTACC CTACCATTCA ATGGTTTCCC AAGGGATCTC TACAGCCAAA
AAAGTATGAA GGTGCACGGA CTGCGGAAGC CCTTGCTGCG TTTGTGAACC TTGAAGCAGG TACTAATGTG AAGATAGCTT
CTGCCCCATC CAGCGTGGTA ATTCTCTCCC CAGATAACTT TGATGAGGTT GTCTTGGATG AAACAAAAGA TGTTCTGGTG
GAATTCTATG CACCATGGTG TGGTCACTGC AAGGCTCTTG CCACTACTTA TGAAAAGGTT GCTGCAGCAT TTAACCTGGA
TGAAGAAGTA GTTATAGCCA ATGTTGATGC TGACAAGTAT AAGAATTTGG CTGAGAGATA TGGTGTTACT GGCTACCCTA
CGCTGAAGTT TTTCCCTAAG AGCAATAAAG CTGGTGAAGA TTATAGTGGT GGTCGTAGTT TGGATGACTT TGTAGCCTTC
ATCAATGAGA AATGTGGTAC ATACCGTGAT GGGAAAGGAC AGCTTAGTTC TAAAGCTGGT ATTGTAGAAT CTCTGGATGG
CTTGGTGAAG GAGTTTGTGA GTGCTGATGA TAATGACAAG AAGGCAGTAT ATTCCCGGCT TGAGGAGGAA GTTAAGAAGC
TCAAGGGTTC TGCTGCCAGA TATGGCAGCC TCTACTTAAA ACTTGCCAAG AAGAGTATGG AAAAGGGTAC GGACTATGCA
AAGAATGAAA TTCTTCGTCT AGACCGCATG CTTGAGAAGT CAATCAGCCC AGCAAAAGCA GATGAATTCA CTCTGAAGAA
GAACATCTTA TCAACGTTTG CTTGATCTTA CTGTGATAGA AGAGTAGTTT ATTTCAGTTA TGCAGGGAGA CATAATTTGT
AATTCCCCAG TTTCTAGGTG TTATCACCCT AGTTTTCTAG ATGTCCCACT TCTTATAAAT AGTATTTCAA GAACATTTTT
GTACTGATCA CTTACCGTGT CTAAAAATTA AAACAGAAGT ACAATTTTCA TTAAGAAATC ATCATACTCT ATATGTTGCT
CAGGCTA

>Vigan.04G373300.01
ATGTGGAGCT CCACTAAGAG GATGACGGTG GCCGTTGCCG CCGTAACGCT CATGATTTTT CTCTCATCGG CTTCAGCCGA
CGACGTCGTT GCACTCACCC AGAACACCTT CGACAACGAG GTTGGCAAGG ATCGTGCCGC TCTCGTCGAG TTTTACGCCC
CTTGGTGTGG ACATTGTAAA AAGCTTGCCC CGGAGTACGA ACAACTCGGA ACGAGTTTCA GGAAAACGAA GTCGGTTTTG
ATTGCGAAGG TGGATTGTGA TGAACATAAA AGCGTTTGCA GTAAATACGG GGTTTCTGGT TACCCTACCA TTCAATGGTT
TCCCAAGGGA TCTCTACAGC CAAAAAAGTA TGAAGGTGCA CGGACTGCGG AAGCCCTTGC TGCGTTTGTG AACCTTGAAG
CAGGTACTAA TGTGAAGATA GCTTCTGCCC CATCCAGCGT GGTAATTCTC TCCCCAGATA ACTTTGATGA GGTTGTCTTG
GATGAAACAA AAGATGTTCT GGTGGAATTC TATGCACCAT GGTGTGGTCA CTGCAAGGCT CTTGCCACTA CTTATGAAAA
GGTTGCTGCA GCATTTAACC TGGATGAAGA AGTAGTTATA GCCAATGTTG ATGCTGACAA GTATAAGAAT TTGGCTGAGA
GATATGGTGT TACTGGCTAC CCTACGCTGA AGTTTTTCCC TAAGAGCAAT AAAGCTGGTG AAGATTATAG TGGTGGTCGT
AGTTTGGATG ACTTTGTAGC CTTCATCAAT GAGAAATGTG GTACATACCG TGATGGGAAA GGACAGCTTA GTTCTAAAGC
TGGTATTGTA GAATCTCTGG ATGGCTTGGT GAAGGAGTTT GTGAGTGCTG ATGATAATGA CAAGAAGGCA GTATATTCCC
GGCTTGAGGA GGAAGTTAAG AAGCTCAAGG GTTCTGCTGC CAGATATGGC AGCCTCTACT TAAAACTTGC CAAGAAGAGT
ATGGAAAAGG GTACGGACTA TGCAAAGAAT GAAATTCTTC GTCTAGACCG CATGCTTGAG AAGTCAATCA GCCCAGCAAA
AGCAGATGAA TTCACTCTGA AGAAGAACAT CTTATCAACG TTTGCTTGA

>Vigan.04G373300.01
MWSSTKRMTV AVAAVTLMIF LSSASADDVV ALTQNTFDNE VGKDRAALVE FYAPWCGHCK KLAPEYEQLG TSFRKTKSVL
IAKVDCDEHK SVCSKYGVSG YPTIQWFPKG SLQPKKYEGA RTAEALAAFV NLEAGTNVKI ASAPSSVVIL SPDNFDEVVL
DETKDVLVEF YAPWCGHCKA LATTYEKVAA AFNLDEEVVI ANVDADKYKN LAERYGVTGY PTLKFFPKSN KAGEDYSGGR
SLDDFVAFIN EKCGTYRDGK GQLSSKAGIV ESLDGLVKEF VSADDNDKKA VYSRLEEEVK KLKGSAARYG SLYLKLAKKS
MEKGTDYAKN EILRLDRMLE KSISPAKADE FTLKKNILST FA*