GBrowse Details

Vigan.04G368500.01

Basic Information:
Name: Vigan.04G368500.01
Multiple alignment
Variant Information
Position: Chr04:48813554..48817538 (+ strand)
Length: 3985
Functional Information:
Description: Similar to Glutamine synthetase nodule isozyme. [P32289, Vigna aconitifolia]
GO: Biological Process: glutamine biosynthetic process (GO:0006542)
Biological Process: nitrogen compound metabolic process (GO:0006807)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: glutamate-ammonia ligase activity (GO:0004356)
InterPro: Glutamine synthetase, catalytic domain (IPR008146)
Glutamine synthetase, beta-Grasp (IPR008147)
Glutamine synthetase/guanido kinase, catalytic domain (IPR014746)
Glutamine synthetase, N-terminal conserved site (IPR027302)
Glutamine synthetase, glycine-rich site (IPR027303)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1133.36,708.26,249.08,154.40,1009.27,506.39,2989.84,196.27
Arabidopsis thaliana homolog: AT1G48470.1, AT1G66200.3, AT3G17820.1, AT5G16570.1, AT5G35630.1, AT5G37600.1
Automatic updates:
Name: NM_001255403 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytosolic glutamine synthetase beta2 (GS1beta2), mRNA.
PubMed ID: 19097025 NCBI(pubmed)
11788764 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:48813554..48813897 (+ strand)
Length: 344
Type: five_prime_UTR
Position: Chr04:48813898..48813971 (+ strand)
Length: 74
Type: CDS
Position: Chr04:48814721..48814760 (+ strand)
Length: 40
Type: CDS
Position: Chr04:48814854..48814957 (+ strand)
Length: 104
Type: CDS
Position: Chr04:48815082..48815130 (+ strand)
Length: 49
Type: CDS
Position: Chr04:48815369..48815475 (+ strand)
Length: 107
Type: CDS
Position: Chr04:48815564..48815651 (+ strand)
Length: 88
Type: CDS
Position: Chr04:48815965..48816093 (+ strand)
Length: 129
Type: CDS
Position: Chr04:48816228..48816302 (+ strand)
Length: 75
Type: CDS
Position: Chr04:48816384..48816437 (+ strand)
Length: 54
Type: CDS
Position: Chr04:48816609..48816646 (+ strand)
Length: 38
Type: CDS
Position: Chr04:48816786..48816945 (+ strand)
Length: 160
Type: CDS
Position: Chr04:48817230..48817382 (+ strand)
Length: 153
Type: CDS
Position: Chr04:48817383..48817538 (+ strand)
Length: 156
Type: three_prime_UTR

>Vigan.04G368500.01 class=Sequence position=Chr04:48813554..48817538 (+ strand)
AATCTATAAT TTTAATGAGT ATCTTGATTA TGTCATTTGA AAAATTGTTT TTTTACCAAA TAAAAAATAT ATTTTTCATG
AATCTAAAAG AAATAAGCAT TAAAAAAGTG AAGGTTTAGG GTAGAAATGA ATTAAAAAAT CATATGTGAA GTGAAAATTA
TGTATTGAAT CTGAGGAAGT ACAATGTGTA GGGGAGCAAG AACAACCCAC TATAAAATCC CACACACCCT ATTCTTCTGT
TCACGTACCT GTTGAATCTC AGTATTCAGA GAAAGGAGAA AGAGAGATCT TTTTGTGCTG TGAAGAAGGG TCTTTCCTTG
TTTCTTCGTG TCTTCACTTT TACCATGTCG CTGCTATCAG ATCTCATCAA CCTCAACCTA TCCGACGACA CCGAGAAGGT
CATCGCAGAG TACATATGGT TAGTCTCTCT CTGTATCTCC ACGCACAGAG TTTTTCTTTT TTTAGGTTGG TTTTTCTGGA
CGTACGAACA AGAACACCAT GAAAACATGT GAACGTTTGA ATTTGTTGTT ACCTGCATGC TTTTACGTTT CCAGGGACGT
TTTTTTGGGA GTGAAACGTT TCTCATGATG GGCGTGACTT ATTATTACTG ATCCTTTGTA TGATCAACGT TGAGAATTGG
GTCCAGCTGA ATGGACTGGT CTCGTATGAC ATGATCAACT CTGTTCCACT CTGCAATACA TGATTTTGTT CCATCCCCTT
TAAAAACGAT CCTGGAAATA TTTGGCCCGA ATTCATGATA TCTCATGAAC TTAAATATTG CAAGAAGGAG ATTACTTTCT
CCCATGATTT GCTTCCTACC CCCTCTTCTT TTTCTCTTGC TGGTGTTTCA TATATTTTGT TCCTGTGATA TATTGTATTC
TCTCTCGATG TTTCGCCCCC CTGTCAATAT TTTTTTTGGG GTAGTTTTGC TTATTTGGTA GGGAAGGGGG TCTCCGAATC
TGAGATGTTT ACTTTACTCT GTATTTTAGT GGCTATGCTG TTGTTTGACT TTATTCAGAT TTTGATCGCT TCAAAGATGA
GCTTGCTCTT TTCTCTGGAA TTAATTTTAA AAAAGGAAGA GTCTTTTCCT TTGTTTTTTT AGTTTGAAAC TTTTTTATGC
AAATTTTCTT CTTGATGAAT TGTAACATTT TATTTTTATT TTGGTAGGAT CGGTGGATCA GGACTGGATC TAAGGAGCAA
AGCAAGGGTA ATTCACTATA TGTATAGCAA GCTGAAAAAA AATTGTATTT GTATTGTTTT CTATTTTCTA ACCCAAGTGT
AAAATGGATC TGGTACACAG ACTCTACCAG GACCAGTTAG CGACCCTTCA AAGCTGCCTA AATGGAACTA TGATGGTTCC
AGCACAGGTC AAGCCCCTGG AGAAGACAGT GAAGTGATTA TATAGTATGG TTCTGTAATC ATCTTAGCTA ACCACTTTTT
CCTTAACCAA TACGCAGTTT GAAAGATTTT TTGTTTTCTA TTTTGTTGAT ATTCTATTCT TTACTTATTT GGGTTGGATT
CCATACAGCC CACAAGCTAT TTTCAAGGAT CCATTCAGAA GGGGTAACAA TATCTTGGTG AGTTTCTTTT TACCCATACA
ACTTGGTTTT TGTAGTAAGT TTGATTTTGA TACTGAGAAG GCGGAAGTTT TCACAACAAA CACGTTGTAG AAATTACTTG
CAACTATTTT TGTAGTTAAT AACCAAATAT CAACAATTTT ACTGTGCATA ATTTATAACC GGTAGCAGTA TAAAAAATCT
TTATGTATTC ACTATGGTTT AATCCTCTTT GTTTTACTTT GTATTTTCAC TCTAGGTTAT GTGTGATGCT TACACTCCAG
CTGGAGAACC CATTCCCACT AACAAGAGGC ACAATGCTGC CAAGATATTC AGCCACCCTG ATGTTGTTGC AGAAGAGCCC
TGGTATACGC TGTTTCTCCA TTGTTGTTTC TAGTAACCAT TTCTAGTTTT CTTTTTCTGA CTATTTATTC TTACATGGTT
TTTTTATCAG GTACGGTATT GAGCAGGAAT ACACCTTATT GCAGAAGGAT GTCAACTGGC CACTTGGGTG GCCTGTTGGC
GGTTTCCCTG GACCTCAAGT GAGTACTCAA TTACACACAC AACTCATTAT ATTATCCATT TCACACATTT ACTCAAAATG
ATCAATGTTG AAACATTTTG GGGCTACATA TGAATAATGA TTCTAATCAC TTAACACTAT CAAAATTTGT CCTTAACCCG
ATTGTTTAAT GTTGTTGGAA CCGTAATTTT TTTGTGAAAG GTGAATGCAG ACCAATTTTA GCTTGTCATT TGGGTGTTTT
TTATTGGAAG TATACTGTTG CCTCTGTTAT TGTTTATACA CTTGTTATAT TTAATTTGGG GAATAACATT ACTGTTTGAT
TTGTTTAACA GGGACCTTAC TATTGTGGTG CTGGTGCTGA TAAGGCTTTT GGGCGTGACA TTGTTGACGC ACATTACAAA
GCCTGTCTTT ATGCTGGCAT CAACATCAGT GGAATTAATG GAGAGGTTAT GCCGGGTCAG GTAAGTTGAA ATTGGTATAA
ATTATGCACT ATTTTTCGTA CACATCATTG ATTACCCTTG ACACTTTCGG CTTGTTTGCT TTCTATAATC TATTTTGATT
TCTTGTATAT TATGCATCAA TCTTGTGTAT GCAGTGGGAA TTCCAAGTTG GACCTGCGGT TGGGATATCA GCTGGTGACG
AGTTGTGGGT AGCTCGTTAC ATCTTGGAGG TAGGTAGCAC GTGACTAATT CTGGTGTTAC TCTACCTATC TCATCAATGA
TCTAACTTTC CTTGTTAATG TCACTAACAG AGGATCACTG AGATTGCTGG TGTGGTGCTT TCCTTTGACC CTAAGCCAAT
CAAGGTTAAC ATTTTCTCTC ACCAAGGGTC AAGTCAATTT TCCCATTTTT ACACCTAGAA ACCATCACAG TTTGTAATGG
TTGAAAGTGT AATATTTCCC TCTTTTTCAT TTACATTATT TAAATGATAT ATATTGAGTT GTTGTCTAAT GTCTTTTGCG
TTATTAAAAA ACCAGGGTGA TTGGAATGGT GCCGGTGCTC ACACCAACTA CAGGTAACCT TTTGTTACTT GAACAGCAAA
TGTCACATTG AGTCTATCGA ATTAATAAAA TACTAATACT AATAATAATA ATAATAATAA TAATAATAGT AATAAGAACA
ATAACAGAGC GACTGTGATA ATATTTTTGC AGCACGAAGA CAATGAGAAA CGATGGTGGC TATGAAGTAA TCAAATCAGC
AATCGAAAAA TTGGGGAAGA AGCACAAGGA GCATATCGCT GCTTATGGAG AAGGCAACGA ACGCCGTCTG ACAGGACGAC
ACGAAACTGC AGACATCAAC ACCTTCTTAT GGGTAAGCAA CAAAAAAACA CCATAATATA CTCTTTTGGT TCTACTATCT
TTCATTCGAC ACACTTCTCT ATGTGGGAAC ACGCATTATG GACCCTCTGT ACAAGAAAGC GACACCAGGG ACCCCTTCTA
GATGATATTT TTTTTCTTCT TCTCTTTTAA TCACAAAATG CCACTTTCTT TTAACTTTCA AGATAATCTG TGAAATAAGT
GAAGATAATA TATATTTTTT CAAGATAATA ATTTTTAAAA GAAAATTGTA TTATATTTGG TGTGATGATT GTTCAGGGAG
TTGCAAACCG TGGAGCTTCT ATTAGAGTTG GGAGGGACAC GGAAAAAGCA GGGAAGGGAT ACTTTGAGGA CAGAAGGCCA
GCTTCTAACA TGGACCCGTA TGTTGTTACT TCCATGATTG CAGACACAAC CATTCTGTGG AAGCCATGAG CAACAACACC
TGCACTTTGT CTTTTCCTTT GGGATGGAGA AAGGAACATT AAGTAGGATT TGGTCCTTTA TTTCACACCT CTTACTTTTT
AGGATTTGGA TTTCTGGTAA TTGTTGTGGT TCGCTTGCTT GGGGCCTTGC TGGTTGGTAC AACTA

>Vigan.04G368500.01
AATCTATAAT TTTAATGAGT ATCTTGATTA TGTCATTTGA AAAATTGTTT TTTTACCAAA TAAAAAATAT ATTTTTCATG
AATCTAAAAG AAATAAGCAT TAAAAAAGTG AAGGTTTAGG GTAGAAATGA ATTAAAAAAT CATATGTGAA GTGAAAATTA
TGTATTGAAT CTGAGGAAGT ACAATGTGTA GGGGAGCAAG AACAACCCAC TATAAAATCC CACACACCCT ATTCTTCTGT
TCACGTACCT GTTGAATCTC AGTATTCAGA GAAAGGAGAA AGAGAGATCT TTTTGTGCTG TGAAGAAGGG TCTTTCCTTG
TTTCTTCGTG TCTTCACTTT TACCATGTCG CTGCTATCAG ATCTCATCAA CCTCAACCTA TCCGACGACA CCGAGAAGGT
CATCGCAGAG TACATATGGA TCGGTGGATC AGGACTGGAT CTAAGGAGCA AAGCAAGGAC TCTACCAGGA CCAGTTAGCG
ACCCTTCAAA GCTGCCTAAA TGGAACTATG ATGGTTCCAG CACAGGTCAA GCCCCTGGAG AAGACAGTGA AGTGATTATA
TACCCACAAG CTATTTTCAA GGATCCATTC AGAAGGGGTA ACAATATCTT GGTTATGTGT GATGCTTACA CTCCAGCTGG
AGAACCCATT CCCACTAACA AGAGGCACAA TGCTGCCAAG ATATTCAGCC ACCCTGATGT TGTTGCAGAA GAGCCCTGGT
ACGGTATTGA GCAGGAATAC ACCTTATTGC AGAAGGATGT CAACTGGCCA CTTGGGTGGC CTGTTGGCGG TTTCCCTGGA
CCTCAAGGAC CTTACTATTG TGGTGCTGGT GCTGATAAGG CTTTTGGGCG TGACATTGTT GACGCACATT ACAAAGCCTG
TCTTTATGCT GGCATCAACA TCAGTGGAAT TAATGGAGAG GTTATGCCGG GTCAGTGGGA ATTCCAAGTT GGACCTGCGG
TTGGGATATC AGCTGGTGAC GAGTTGTGGG TAGCTCGTTA CATCTTGGAG AGGATCACTG AGATTGCTGG TGTGGTGCTT
TCCTTTGACC CTAAGCCAAT CAAGGGTGAT TGGAATGGTG CCGGTGCTCA CACCAACTAC AGCACGAAGA CAATGAGAAA
CGATGGTGGC TATGAAGTAA TCAAATCAGC AATCGAAAAA TTGGGGAAGA AGCACAAGGA GCATATCGCT GCTTATGGAG
AAGGCAACGA ACGCCGTCTG ACAGGACGAC ACGAAACTGC AGACATCAAC ACCTTCTTAT GGGGAGTTGC AAACCGTGGA
GCTTCTATTA GAGTTGGGAG GGACACGGAA AAAGCAGGGA AGGGATACTT TGAGGACAGA AGGCCAGCTT CTAACATGGA
CCCGTATGTT GTTACTTCCA TGATTGCAGA CACAACCATT CTGTGGAAGC CATGAGCAAC AACACCTGCA CTTTGTCTTT
TCCTTTGGGA TGGAGAAAGG AACATTAAGT AGGATTTGGT CCTTTATTTC ACACCTCTTA CTTTTTAGGA TTTGGATTTC
TGGTAATTGT TGTGGTTCGC TTGCTTGGGG CCTTGCTGGT TGGTACAACT A

>Vigan.04G368500.01
ATGTCGCTGC TATCAGATCT CATCAACCTC AACCTATCCG ACGACACCGA GAAGGTCATC GCAGAGTACA TATGGATCGG
TGGATCAGGA CTGGATCTAA GGAGCAAAGC AAGGACTCTA CCAGGACCAG TTAGCGACCC TTCAAAGCTG CCTAAATGGA
ACTATGATGG TTCCAGCACA GGTCAAGCCC CTGGAGAAGA CAGTGAAGTG ATTATATACC CACAAGCTAT TTTCAAGGAT
CCATTCAGAA GGGGTAACAA TATCTTGGTT ATGTGTGATG CTTACACTCC AGCTGGAGAA CCCATTCCCA CTAACAAGAG
GCACAATGCT GCCAAGATAT TCAGCCACCC TGATGTTGTT GCAGAAGAGC CCTGGTACGG TATTGAGCAG GAATACACCT
TATTGCAGAA GGATGTCAAC TGGCCACTTG GGTGGCCTGT TGGCGGTTTC CCTGGACCTC AAGGACCTTA CTATTGTGGT
GCTGGTGCTG ATAAGGCTTT TGGGCGTGAC ATTGTTGACG CACATTACAA AGCCTGTCTT TATGCTGGCA TCAACATCAG
TGGAATTAAT GGAGAGGTTA TGCCGGGTCA GTGGGAATTC CAAGTTGGAC CTGCGGTTGG GATATCAGCT GGTGACGAGT
TGTGGGTAGC TCGTTACATC TTGGAGAGGA TCACTGAGAT TGCTGGTGTG GTGCTTTCCT TTGACCCTAA GCCAATCAAG
GGTGATTGGA ATGGTGCCGG TGCTCACACC AACTACAGCA CGAAGACAAT GAGAAACGAT GGTGGCTATG AAGTAATCAA
ATCAGCAATC GAAAAATTGG GGAAGAAGCA CAAGGAGCAT ATCGCTGCTT ATGGAGAAGG CAACGAACGC CGTCTGACAG
GACGACACGA AACTGCAGAC ATCAACACCT TCTTATGGGG AGTTGCAAAC CGTGGAGCTT CTATTAGAGT TGGGAGGGAC
ACGGAAAAAG CAGGGAAGGG ATACTTTGAG GACAGAAGGC CAGCTTCTAA CATGGACCCG TATGTTGTTA CTTCCATGAT
TGCAGACACA ACCATTCTGT GGAAGCCATG A

>Vigan.04G368500.01
MSLLSDLINL NLSDDTEKVI AEYIWIGGSG LDLRSKARTL PGPVSDPSKL PKWNYDGSST GQAPGEDSEV IIYPQAIFKD
PFRRGNNILV MCDAYTPAGE PIPTNKRHNA AKIFSHPDVV AEEPWYGIEQ EYTLLQKDVN WPLGWPVGGF PGPQGPYYCG
AGADKAFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF QVGPAVGISA GDELWVARYI LERITEIAGV VLSFDPKPIK
GDWNGAGAHT NYSTKTMRND GGYEVIKSAI EKLGKKHKEH IAAYGEGNER RLTGRHETAD INTFLWGVAN RGASIRVGRD
TEKAGKGYFE DRRPASNMDP YVVTSMIADT TILWKP*