GBrowse Details

Vigan.04G364600.01

Basic Information:
Name: Vigan.04G364600.01
Multiple alignment
Variant Information
Position: Chr04:48399374..48403043 (+ strand)
Length: 3670
Functional Information:
Description: Similar to Uncharacterized protein. [I1MZC1, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: WD40 repeat (IPR001680)
WD40/YVTN repeat-like-containing domain (IPR015943)
WD40-repeat-containing domain (IPR017986)
WD40 repeat, conserved site (IPR019775)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,5.92,1.07,2.34,7.91,2.01,1.79
Arabidopsis thaliana homolog: AT5G13840.1
Automatic updates:
Name: NM_001250239 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WD-repeat cell cycle regulatory protein (CCS52), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:48399374..48399618 (+ strand)
Length: 245
Type: five_prime_UTR
Position: Chr04:48399619..48400152 (+ strand)
Length: 534
Type: CDS
Position: Chr04:48401115..48401237 (+ strand)
Length: 123
Type: CDS
Position: Chr04:48401319..48401423 (+ strand)
Length: 105
Type: CDS
Position: Chr04:48401523..48401702 (+ strand)
Length: 180
Type: CDS
Position: Chr04:48401782..48401844 (+ strand)
Length: 63
Type: CDS
Position: Chr04:48401956..48402150 (+ strand)
Length: 195
Type: CDS
Position: Chr04:48402246..48402347 (+ strand)
Length: 102
Type: CDS
Position: Chr04:48402437..48402499 (+ strand)
Length: 63
Type: CDS
Position: Chr04:48402583..48402651 (+ strand)
Length: 69
Type: CDS
Position: Chr04:48402728..48402781 (+ strand)
Length: 54
Type: CDS
Position: Chr04:48402782..48403043 (+ strand)
Length: 262
Type: three_prime_UTR

>Vigan.04G364600.01 class=Sequence position=Chr04:48399374..48403043 (+ strand)
TTTTCCTTTT CTCTTCCCAC GCTCCTCAGA AATTCGACCG TTGAACTTAT AATAAGTCAC TATTCTTCAT TTCCATCATC
ACTAAAACCA AAACTCTGTC TCTCTCTCCC TCTCTGTTTT TTCTATCTTG ATCTGTTGTT TTCTTTCACA TAAACAGAGA
GAAAGGGTTT TTTCTTCGTT CTCTAGCATT GTTTATCGTC TCTTTCTTCT GTTCTTCATT CATCCAACAG TAGAAGCTGC
TGAAAATGGA GTCTCCTCAA ACCAAGAAAT CGGGTCTGAA CCTCCCAGCT GGGATGTCCG GAACCTCACT CCGCCTTGAC
ACTTTTGCTT CATCGCCATC TTCTTCTCGT TCCATTGCCA GCCTCACTTC TCCTTCTTCT CTCCGTTCCA TCTCTAACCT
TACTTCACCT TCGAAATCAA GCACATGCAG CGACAGGTTC ATCCCCTGCC GCTCCTCCTC ACGCCTCCAC ACGTTCGGCC
TCGTAGATAG GCCATCGCCG GTGAAGGAAG GGAGTAACGA GGCGTATTCC AGGTTGTTGA AACGCGAACT CTTTGGATCT
GACTTTGCTT CTCCTTCTTC TCTTTCTTCT CCTTCTGCAG GTGCTCCTCC CTCGCCGATC AGTCCCAGCA AAAACATGCT
CCGTTTCAAG ACCGATCACT CCACTGCGCC TTCCTCCCCT TACTCTCCTT CCATCTTGGG GCAGCAGAGT ACCTTCGGTT
CTGATTCCTC TACTCCGCCT CCCAAACCAC CCCGGAAAGT CCCCAAGACA CCCCACAAGG CAAGCTCTTT TTTTCCCTTT
TATTCATTTC AATGTATCTA TTCTTCTTGG CATGCAAATT TGTGATTTTG AATAAAAACA CTTTTGGTCT CTTTTCCTTC
CTATTTTTGA GACAACTGTG GCAATGGGTG AGCTTGTTAT GCATTGACTG TGAGTGTGGA AGATAACCTT TCTCTTGGGA
AAGTCAATTC GTTGTAAGGG TCTCTAAACA TTAAACCCTA GGGATCTCAG TGCTCTCGGA TTAATATTTA CTATTGATGG
TAGAAATGGC GACAGAAATA CATGGGTTTG CAAATAAAAC TAGTACATTA TATCTGTCAT GAATGGAGTT GGCGGAATGC
TTTGTGCGTG CATGTATAAG ATCTATGGTT ATGATTTGAC AAACTTGCAG TGGGACAATT ATTGTATTAT CTGAGATCGC
CATGTGCCTG AGTTCTTATT AATCTCCTGA ATTTTATCCA ATCCTTGTAC AATGACAATT TTTGTAATAT GGAGATTTGT
TAAGACCGTA CATGTGGTGA TTTTTGACAA TGTAAGAATT TCTTGTAGTG GAGGAAGATC TAGAAAAACT GTAGTGGAAA
CAATTAAAGA AGGATATTAG GGTAACACTA TTGTTATTAG GATGTTGCCG TTAGCTCCAT CCTCCCTAAG AGAGTATAGG
GAGAGTATAG GATGTCCCGT TTGTTACATG TGTACCAATC TCTACCATTA TGTTACATAT AAAGTTGATC ATGAGCCTTT
AACAAACAAT TCAAGCTTTG GGCTTCTTCA GTGAAGTTGA ATTTCAGCTC TGAAAGTAAT CTCATGCTTC TGTTCTTGTG
TTACACATGC CAAACTTGAG CTTTTGAGAT ATATATTGGT CCTTAATGTA GCTTGAACAA AGTTAAACCC ACTGTATATA
TATTGGATTA CTGAACTTGA TTGTTGATTG CTAAAATCGA ACAAGGTTGT GCATTATTCA GGTTCTGGAT GCTCCATCAC
TTCAGGATGA CTTTTACTTG AATCTAGTGG ACTGGTCCTC ACAGAATGTT CTTGCTGTGG GACTAGGCAC TTGTGTTTAT
CTTTGGAGCG CTTCAAACAG TAAAGTGAGC TACCAACAAT TTCATATTGA CCAAAAACTC CTCTCACGAA GAATCTAAAG
CAAAATATAT TTATGTGGTT TTCAGGTGAC TAAGCTATGT GACTTGGGTC CTTATGATGG TGTATGTTCT GTCCAGTGGA
CCCGGGAGGG CTCTTTTATA TCAATTGGTA CAAATCTTGG CCAAGTTCAG GTACTTTGTC TCACTCTAGA TTTTTGTTTA
TTCATCCATG AATTGTTTCA TTTCATGATT AAGAAATAAA GAAGATACAC TTTGCTTTAT GCTATACAGG TTTGGGATGG
AACTCAGTGT AAGAAGGTCA GAACTATGGG AGGACATCAG ACAAGGACTG GTGTGTTGGC ATGGAACTCT CGCATTCTGG
CCTCAGGGAG CAGGGATAGG AACATACTTC AGCATGACAT GAGGGTTTCA GGGGACTTTA TTAACAAGCT CGTTGGCCAC
AAGTCAGAGG TAAAAATATT TTGAGGAATA TAGATTGAAC TTGAATATGA GAAGTTGTTA ACAATTGTTA TCCCTCAATT
TGTGGCAGGT ATGTGGATTG AAATGGTCCT GTGATGACAG GGAACTTGCC TCTGGTGGTA ATGATAATCA GGTATACTTT
TCTTCCTTTT CTTTACCAAG TCTAGAAAAA AGTTCTTTAT TCTGTATTTC TTGTTAAGAT TTTTGTGTTT GCTCTTCATG
TTATGTTTTA TTATATGATC AGCTCCTGGT ATGGAATCAA CACTCTCAGC AACCAACTCT GAGACTCACA GAACATACTG
CTGCAGTTAA GGCCATTGCT TGGTCACCTC ACCAAAGCGG TCTCCTTGTG TCTGGCGGTG GAACTGCTGA TAGGTGCATT
CGTTTTTGGA ACACTACAAA TGGCCATCAA TTAAACAGTG TTGACACTGG GAGCCAGGTT TATTTCTTTT CTATTTTTGG
CCACTGAGAC ATTTAATCCA TACTCAAACA AAAAAACATC TCAACTCAAC CACTTTAATG CATGATATGC AGGTCTGCAA
CCTTGTTTGG AGTAAAAATG TGAATGAGCT AGTAAGTACA CACGGATACT CCCAAAATCA GATTATGGTG TGGAAGTATC
CATCATTGGC AAAGGTACTT GCTTTGACAA TTCTACATAT TATAGATAAA CTACAATCAG AAAACTATTT GTCTGTGTAA
ACTTATGGAC AAATTTTGAA CAGGTTGCAA CTCTAACTGG CCATAGCATG AGAGTGCTGT ACCTTGCAAT GTCACCTGAT
GGTCAGGTAC TGAATGTTCC CACATAACAT AGTTGAAAAG AAATTATTCA TTTTTTGTTT ACATTTTAAT TTTATTGGAA
CAATTGCAGA CAATAGTAAC TGGAGCAGGG GATGAGACTC TCCGGTTCTG GAATATTTTC CCTTCAATGA AAGCACCTGT
AAGCAATGTG ACCAATTTCA ATTCCTAACT CAAATTCTTT GTCCTATGAT TCATGATGTT GTTTTCTTTT TCAGGCTCCT
GTTAAGGATA CAGGCCTTTG GTCACTGGGG CGTACTCAAA TTCGATGATC CATAATGGGA CAAGAACAAG AAGAGAAACA
AAGCTATCTC AGTATCTTGT AATTAATTAT CTGTATATGA AAAAAAAAAA CATAATACTG TCATATATCA TCAAACACGA
GGAACTTACC AAGTAGGAAG TCGGCATCTA AATTCAATGG TTTTTTAATG TAATAATGGT ACAACAGTGT AAAGTTATTA
AATTACAAGC TTGTCACATA AATTGTAAAT TCTGCATCCC AATTTTATGA GAAATTGTGT CCTCAGTTTT 

>Vigan.04G364600.01
TTTTCCTTTT CTCTTCCCAC GCTCCTCAGA AATTCGACCG TTGAACTTAT AATAAGTCAC TATTCTTCAT TTCCATCATC
ACTAAAACCA AAACTCTGTC TCTCTCTCCC TCTCTGTTTT TTCTATCTTG ATCTGTTGTT TTCTTTCACA TAAACAGAGA
GAAAGGGTTT TTTCTTCGTT CTCTAGCATT GTTTATCGTC TCTTTCTTCT GTTCTTCATT CATCCAACAG TAGAAGCTGC
TGAAAATGGA GTCTCCTCAA ACCAAGAAAT CGGGTCTGAA CCTCCCAGCT GGGATGTCCG GAACCTCACT CCGCCTTGAC
ACTTTTGCTT CATCGCCATC TTCTTCTCGT TCCATTGCCA GCCTCACTTC TCCTTCTTCT CTCCGTTCCA TCTCTAACCT
TACTTCACCT TCGAAATCAA GCACATGCAG CGACAGGTTC ATCCCCTGCC GCTCCTCCTC ACGCCTCCAC ACGTTCGGCC
TCGTAGATAG GCCATCGCCG GTGAAGGAAG GGAGTAACGA GGCGTATTCC AGGTTGTTGA AACGCGAACT CTTTGGATCT
GACTTTGCTT CTCCTTCTTC TCTTTCTTCT CCTTCTGCAG GTGCTCCTCC CTCGCCGATC AGTCCCAGCA AAAACATGCT
CCGTTTCAAG ACCGATCACT CCACTGCGCC TTCCTCCCCT TACTCTCCTT CCATCTTGGG GCAGCAGAGT ACCTTCGGTT
CTGATTCCTC TACTCCGCCT CCCAAACCAC CCCGGAAAGT CCCCAAGACA CCCCACAAGG TTCTGGATGC TCCATCACTT
CAGGATGACT TTTACTTGAA TCTAGTGGAC TGGTCCTCAC AGAATGTTCT TGCTGTGGGA CTAGGCACTT GTGTTTATCT
TTGGAGCGCT TCAAACAGTA AAGTGACTAA GCTATGTGAC TTGGGTCCTT ATGATGGTGT ATGTTCTGTC CAGTGGACCC
GGGAGGGCTC TTTTATATCA ATTGGTACAA ATCTTGGCCA AGTTCAGGTT TGGGATGGAA CTCAGTGTAA GAAGGTCAGA
ACTATGGGAG GACATCAGAC AAGGACTGGT GTGTTGGCAT GGAACTCTCG CATTCTGGCC TCAGGGAGCA GGGATAGGAA
CATACTTCAG CATGACATGA GGGTTTCAGG GGACTTTATT AACAAGCTCG TTGGCCACAA GTCAGAGGTA TGTGGATTGA
AATGGTCCTG TGATGACAGG GAACTTGCCT CTGGTGGTAA TGATAATCAG CTCCTGGTAT GGAATCAACA CTCTCAGCAA
CCAACTCTGA GACTCACAGA ACATACTGCT GCAGTTAAGG CCATTGCTTG GTCACCTCAC CAAAGCGGTC TCCTTGTGTC
TGGCGGTGGA ACTGCTGATA GGTGCATTCG TTTTTGGAAC ACTACAAATG GCCATCAATT AAACAGTGTT GACACTGGGA
GCCAGGTCTG CAACCTTGTT TGGAGTAAAA ATGTGAATGA GCTAGTAAGT ACACACGGAT ACTCCCAAAA TCAGATTATG
GTGTGGAAGT ATCCATCATT GGCAAAGGTT GCAACTCTAA CTGGCCATAG CATGAGAGTG CTGTACCTTG CAATGTCACC
TGATGGTCAG ACAATAGTAA CTGGAGCAGG GGATGAGACT CTCCGGTTCT GGAATATTTT CCCTTCAATG AAAGCACCTG
CTCCTGTTAA GGATACAGGC CTTTGGTCAC TGGGGCGTAC TCAAATTCGA TGATCCATAA TGGGACAAGA ACAAGAAGAG
AAACAAAGCT ATCTCAGTAT CTTGTAATTA ATTATCTGTA TATGAAAAAA AAAAACATAA TACTGTCATA TATCATCAAA
CACGAGGAAC TTACCAAGTA GGAAGTCGGC ATCTAAATTC AATGGTTTTT TAATGTAATA ATGGTACAAC AGTGTAAAGT
TATTAAATTA CAAGCTTGTC ACATAAATTG TAAATTCTGC ATCCCAATTT TATGAGAAAT TGTGTCCTCA GTTTT

>Vigan.04G364600.01
ATGGAGTCTC CTCAAACCAA GAAATCGGGT CTGAACCTCC CAGCTGGGAT GTCCGGAACC TCACTCCGCC TTGACACTTT
TGCTTCATCG CCATCTTCTT CTCGTTCCAT TGCCAGCCTC ACTTCTCCTT CTTCTCTCCG TTCCATCTCT AACCTTACTT
CACCTTCGAA ATCAAGCACA TGCAGCGACA GGTTCATCCC CTGCCGCTCC TCCTCACGCC TCCACACGTT CGGCCTCGTA
GATAGGCCAT CGCCGGTGAA GGAAGGGAGT AACGAGGCGT ATTCCAGGTT GTTGAAACGC GAACTCTTTG GATCTGACTT
TGCTTCTCCT TCTTCTCTTT CTTCTCCTTC TGCAGGTGCT CCTCCCTCGC CGATCAGTCC CAGCAAAAAC ATGCTCCGTT
TCAAGACCGA TCACTCCACT GCGCCTTCCT CCCCTTACTC TCCTTCCATC TTGGGGCAGC AGAGTACCTT CGGTTCTGAT
TCCTCTACTC CGCCTCCCAA ACCACCCCGG AAAGTCCCCA AGACACCCCA CAAGGTTCTG GATGCTCCAT CACTTCAGGA
TGACTTTTAC TTGAATCTAG TGGACTGGTC CTCACAGAAT GTTCTTGCTG TGGGACTAGG CACTTGTGTT TATCTTTGGA
GCGCTTCAAA CAGTAAAGTG ACTAAGCTAT GTGACTTGGG TCCTTATGAT GGTGTATGTT CTGTCCAGTG GACCCGGGAG
GGCTCTTTTA TATCAATTGG TACAAATCTT GGCCAAGTTC AGGTTTGGGA TGGAACTCAG TGTAAGAAGG TCAGAACTAT
GGGAGGACAT CAGACAAGGA CTGGTGTGTT GGCATGGAAC TCTCGCATTC TGGCCTCAGG GAGCAGGGAT AGGAACATAC
TTCAGCATGA CATGAGGGTT TCAGGGGACT TTATTAACAA GCTCGTTGGC CACAAGTCAG AGGTATGTGG ATTGAAATGG
TCCTGTGATG ACAGGGAACT TGCCTCTGGT GGTAATGATA ATCAGCTCCT GGTATGGAAT CAACACTCTC AGCAACCAAC
TCTGAGACTC ACAGAACATA CTGCTGCAGT TAAGGCCATT GCTTGGTCAC CTCACCAAAG CGGTCTCCTT GTGTCTGGCG
GTGGAACTGC TGATAGGTGC ATTCGTTTTT GGAACACTAC AAATGGCCAT CAATTAAACA GTGTTGACAC TGGGAGCCAG
GTCTGCAACC TTGTTTGGAG TAAAAATGTG AATGAGCTAG TAAGTACACA CGGATACTCC CAAAATCAGA TTATGGTGTG
GAAGTATCCA TCATTGGCAA AGGTTGCAAC TCTAACTGGC CATAGCATGA GAGTGCTGTA CCTTGCAATG TCACCTGATG
GTCAGACAAT AGTAACTGGA GCAGGGGATG AGACTCTCCG GTTCTGGAAT ATTTTCCCTT CAATGAAAGC ACCTGCTCCT
GTTAAGGATA CAGGCCTTTG GTCACTGGGG CGTACTCAAA TTCGATGA

>Vigan.04G364600.01
MESPQTKKSG LNLPAGMSGT SLRLDTFASS PSSSRSIASL TSPSSLRSIS NLTSPSKSST CSDRFIPCRS SSRLHTFGLV
DRPSPVKEGS NEAYSRLLKR ELFGSDFASP SSLSSPSAGA PPSPISPSKN MLRFKTDHST APSSPYSPSI LGQQSTFGSD
SSTPPPKPPR KVPKTPHKVL DAPSLQDDFY LNLVDWSSQN VLAVGLGTCV YLWSASNSKV TKLCDLGPYD GVCSVQWTRE
GSFISIGTNL GQVQVWDGTQ CKKVRTMGGH QTRTGVLAWN SRILASGSRD RNILQHDMRV SGDFINKLVG HKSEVCGLKW
SCDDRELASG GNDNQLLVWN QHSQQPTLRL TEHTAAVKAI AWSPHQSGLL VSGGGTADRC IRFWNTTNGH QLNSVDTGSQ
VCNLVWSKNV NELVSTHGYS QNQIMVWKYP SLAKVATLTG HSMRVLYLAM SPDGQTIVTG AGDETLRFWN IFPSMKAPAP
VKDTGLWSLG RTQIR*