GBrowse Details

Vigan.04G361200.01

Basic Information:
Name: Vigan.04G361200.01
Multiple alignment
Variant Information
Position: Chr04:48130676..48133789 (+ strand)
Length: 3114
Functional Information:
Description: Similar to thylakoid lumenal 15 kDa protein 1, chloroplastic-like. [XP_004503171.1, Cicer arietinum]
InterPro: Pentapeptide repeat (IPR001646)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.88,2.37,25.82,55.20,5.99,23.65,5.22,12.60
Arabidopsis thaliana homolog: AT2G44920.2
Automatic updates:
Name: NM_001254030 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thylakoid lumenal 15 kDa protein 1, chloroplastic-like (LOC100806792), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:48130676..48130725 (+ strand)
Length: 50
Type: five_prime_UTR
Position: Chr04:48130726..48130830 (+ strand)
Length: 105
Type: CDS
Position: Chr04:48130908..48131042 (+ strand)
Length: 135
Type: CDS
Position: Chr04:48131150..48131245 (+ strand)
Length: 96
Type: CDS
Position: Chr04:48131699..48131771 (+ strand)
Length: 73
Type: CDS
Position: Chr04:48131877..48131938 (+ strand)
Length: 62
Type: CDS
Position: Chr04:48132456..48132537 (+ strand)
Length: 82
Type: CDS
Position: Chr04:48133173..48133233 (+ strand)
Length: 61
Type: CDS
Position: Chr04:48133313..48133364 (+ strand)
Length: 52
Type: CDS
Position: Chr04:48133365..48133789 (+ strand)
Length: 425
Type: three_prime_UTR

>Vigan.04G361200.01 class=Sequence position=Chr04:48130676..48133789 (+ strand)
GCCAGATGGT ACCTATCACA GTTGCATCTG CGTGGGTGTG ACTGCAAGAA ATGGCTCTTG TTCTGAAGGT CTCCTTGTGT
TCCACTTCTA AGCCACATCT TTCTCTCTCA AACTCCAATT TCAAACCCAC TACTCTTTTT CATCTTCCTC TTCTGGTTCG
TATACTCTAC CTATTACCTA TTTCTCTCTT ATTCATCTTC AACACCGTAA TTCTCTTAGC TTCGTTTCAC AGGGATTCAA
CGCAAAGCAA ACTCGCCAAC CATCTCAGAA ACTCGCATTT CCATTGGGTG AGTCTGTGTC TGGTGCCACC CTCGTGGCTC
TCCTCTCTGC CTCTTTCATC TTTGTTGATC CCGCACTTGC ATTCAAGGTA ATCAATAACT CAACATTTTA TAGTTTATCG
ATAAGAATTT TGAACCCCAG TTATTCAAGT TAAAGGCTTT TTGAGTTCAT GAATGATGGG TATGGAGAAT TCAGGGTGGA
GGTCCATACG GGCAAGAAGT GACACGGGGA CAAGATCTCA CTGGGAAGGA CTTCAGTGGC AAGACTCTGA TCAAACAAGA
CTTCAAAACG GTGTAACTTT TTATTTTCCC CTTTGTTTTT AATTTTCAAA GGAGTTTACT TTTAATGCAT TTTATCTTTC
AACATAGTTT TTTTTAAATC AAATTAACTT TTAAGGTAAT TATTATAAAT AAAACAATCT TGTCGAACAT AACAATCCAT
AATTGTATGA CATTCTAATT AAATTCAAGA TAATTTCTGT ACTGCAAAGA TTTTTACATT CTTAACTAAT TAATGATCGG
GATAATCTTG AATTTAAGTA GTTTCTGTAT GAAGTTCATA AACTTACCTA TGATAATGTC TAATTGAATC GTAGTATAAA
AACTTTTTAC ACTGCAAGTG CAAAATTTAT TTTCTCATTA AACTCTGTTT AAAACTAAAC TGATTTGAAA TTTGATGATG
GAGTCATTCA AATGTGTGCT TTTGATCAAA ATTTAATAAG TTAACTAACG TTGCCTGGTA CAGTCCATAC TGAGACAAGC
CAATTTTAAA GGTGCAAAGT TAATAGGTGC TAGCTTCTTT GATGCTGATT TAACAGGTTT GTCCAACACT TCATGTTATA
ATAATGAATG TAATGTAAAC ATTTCGAATC CTGTTTACCG TTCACATTTA TATTCTCTCC CCCATCTGCT GTCTTTGTCA
GGTGCTGATC TTTCGGATGC TGATCTTCGA AATGCTGATT TTTCCCTGGC TAATGTGACG AAGGTAATTG TTGTTTTGTG
TGTATTGTGC TCACATCAAC CCAAAATTTT ACGTAATGGG AGTGATCAAA CATAGGGAAA TAGTGTGAGT GGAGGGTAGA
TGATTAATCC TCAAATTTCT CAACATCTGA TTAACTGTTT CCTCATCCCG TCCTTTTGTT ATATTATTAG AAGAGAAATT
ACAAATGTTT CAAATAGATA CAGAGAAAAC GGGATACTAA ATGACCAAAT GGAAATATGA GGGATATTAG TGAATGCACA
CGAACATGTT CTAAAAGAAA TCACTAGTAA AGAACGTGAA CACGTCCAAT TATAACATAG AAGGTGCAAT CAAGTTAACT
TATATGATGC ATCATTAACA TAATTGTTAG CCATCTGCAA TCAGACAGAA TGATAAATTG CATATGGATA GAATCAGACG
GGAAACGATT AACAACTTCA AATTTTCTTA TAATTGTTAC CCAGTCCACT TTAATTGACG AATTTCTTTT TGGTTCTGTT
CTGCATACCA CTTTCTGCAG GCAAACTTAA GCAATGCTAA CTTGGAAGGT GCACTTGCAA CAGGAAATAC TTCTTTTAAG
GGATCAATTA TTACAGGTGC TGGTATGTAA TACCACTTAA ACTAGAATGT GCTACTATTT CGCTTCAAGG GAAATATGGA
TGTAAAAGAG TGTGCTTCTG ATGATAGCTT TCAATTCATT AAAATTCCTG CATTGATATT GGCTGGTGAT TAGTTTACTA
ATCTATAGTT CCAAACCTGC CCAGTTAGAG AGAAAGAAGA AAACATATAA TGGAGGAAAA ACAATGGGAA GCAAGTTTGT
CTGCAAAATC CATGAATATG TCTATGAACT TTACAAAGAC AAATTATATT CTCCTTGACA ATGGCACTGT GCTTCCATTT
GTCATGATCT CACCCTGTTT TAGTTTGTAT TTTTTTATGA AATATGTCCA TCACTAGTAA ATCTGCCGGA AATTTTTTAA
TACTCAACAT GCAGTTCAGA TATTAGAATA TAGATTAGTC GTTTGTGTAG AAATTAGTAC AGTGCACCTG CATAAGTTTG
GTTTCTGTAT GAGAAGTAAT CATGGAAACT TACGATATGT TTGAGCTGAT GTAATAACTG AACCTGTAAA TGTAATGTTA
AGAGCGTAAA TAAACTTTGT TAAGACACGA TGACACCACA AGAGTAAAAA TTTACATCTT CATTTGATGG TTTGCTTATT
GTTTTGGTTG GAATCAGACT TCACGGATGT ACCACTAAGA GAAGATCAAC GTGAATACCT CTGCAAAGTT GCTGATGGGT
AAGATTATAT ACATAAATTA AGATTGTTTT ATTGTCTGAA GATGCTTCAT CTGTAACGAA GTTGTTTCTG GTAACAGAGT
GAACCCAACA ACTGGAAATG CTACGCGTGA TACATTGTTC TGCAATTAGT ATTCCATTGC TGACATTGCT GAAGAAGACT
CACTCCAAGA CCTTCAAAAT ATATGCACTA AATATTTGTA TCTCCATTAT CCTCTGTGCG GTCTGTGAAG TTGTCAGCTT
GGCATGTTGT TGGAATCTTG TAATACAAAG CAACAAAATC TAGACTATTC CAAATTTCCA TTCACCATAC AATTGACAAT
AAGATTGTGA TGTAACGCTC TTAACCATAC CTATTTGTTT CACATAGCTC AACTCCTTTC ATCTATAGTA TAATAATACA
CTGAGGAATA CATGGAGTGG CCTTGAGCAA GACTTAGGGT CAATTTTGAA TAAATTTCTT AATCGAAAAA AAAAAAGTTA
GTTTTTTGGT AAGCTAAAAT TAGTTTTATT TATGTGTACG ATAATTTATT TCATATAATT TTTCTGACTT TTTT

>Vigan.04G361200.01
GCCAGATGGT ACCTATCACA GTTGCATCTG CGTGGGTGTG ACTGCAAGAA ATGGCTCTTG TTCTGAAGGT CTCCTTGTGT
TCCACTTCTA AGCCACATCT TTCTCTCTCA AACTCCAATT TCAAACCCAC TACTCTTTTT CATCTTCCTC TTCTGGGATT
CAACGCAAAG CAAACTCGCC AACCATCTCA GAAACTCGCA TTTCCATTGG GTGAGTCTGT GTCTGGTGCC ACCCTCGTGG
CTCTCCTCTC TGCCTCTTTC ATCTTTGTTG ATCCCGCACT TGCATTCAAG GGTGGAGGTC CATACGGGCA AGAAGTGACA
CGGGGACAAG ATCTCACTGG GAAGGACTTC AGTGGCAAGA CTCTGATCAA ACAAGACTTC AAAACGTCCA TACTGAGACA
AGCCAATTTT AAAGGTGCAA AGTTAATAGG TGCTAGCTTC TTTGATGCTG ATTTAACAGG TGCTGATCTT TCGGATGCTG
ATCTTCGAAA TGCTGATTTT TCCCTGGCTA ATGTGACGAA GGCAAACTTA AGCAATGCTA ACTTGGAAGG TGCACTTGCA
ACAGGAAATA CTTCTTTTAA GGGATCAATT ATTACAGGTG CTGACTTCAC GGATGTACCA CTAAGAGAAG ATCAACGTGA
ATACCTCTGC AAAGTTGCTG ATGGAGTGAA CCCAACAACT GGAAATGCTA CGCGTGATAC ATTGTTCTGC AATTAGTATT
CCATTGCTGA CATTGCTGAA GAAGACTCAC TCCAAGACCT TCAAAATATA TGCACTAAAT ATTTGTATCT CCATTATCCT
CTGTGCGGTC TGTGAAGTTG TCAGCTTGGC ATGTTGTTGG AATCTTGTAA TACAAAGCAA CAAAATCTAG ACTATTCCAA
ATTTCCATTC ACCATACAAT TGACAATAAG ATTGTGATGT AACGCTCTTA ACCATACCTA TTTGTTTCAC ATAGCTCAAC
TCCTTTCATC TATAGTATAA TAATACACTG AGGAATACAT GGAGTGGCCT TGAGCAAGAC TTAGGGTCAA TTTTGAATAA
ATTTCTTAAT CGAAAAAAAA AAAGTTAGTT TTTTGGTAAG CTAAAATTAG TTTTATTTAT GTGTACGATA ATTTATTTCA
TATAATTTTT CTGACTTTTT T

>Vigan.04G361200.01
ATGGCTCTTG TTCTGAAGGT CTCCTTGTGT TCCACTTCTA AGCCACATCT TTCTCTCTCA AACTCCAATT TCAAACCCAC
TACTCTTTTT CATCTTCCTC TTCTGGGATT CAACGCAAAG CAAACTCGCC AACCATCTCA GAAACTCGCA TTTCCATTGG
GTGAGTCTGT GTCTGGTGCC ACCCTCGTGG CTCTCCTCTC TGCCTCTTTC ATCTTTGTTG ATCCCGCACT TGCATTCAAG
GGTGGAGGTC CATACGGGCA AGAAGTGACA CGGGGACAAG ATCTCACTGG GAAGGACTTC AGTGGCAAGA CTCTGATCAA
ACAAGACTTC AAAACGTCCA TACTGAGACA AGCCAATTTT AAAGGTGCAA AGTTAATAGG TGCTAGCTTC TTTGATGCTG
ATTTAACAGG TGCTGATCTT TCGGATGCTG ATCTTCGAAA TGCTGATTTT TCCCTGGCTA ATGTGACGAA GGCAAACTTA
AGCAATGCTA ACTTGGAAGG TGCACTTGCA ACAGGAAATA CTTCTTTTAA GGGATCAATT ATTACAGGTG CTGACTTCAC
GGATGTACCA CTAAGAGAAG ATCAACGTGA ATACCTCTGC AAAGTTGCTG ATGGAGTGAA CCCAACAACT GGAAATGCTA
CGCGTGATAC ATTGTTCTGC AATTAG

>Vigan.04G361200.01
MALVLKVSLC STSKPHLSLS NSNFKPTTLF HLPLLGFNAK QTRQPSQKLA FPLGESVSGA TLVALLSASF IFVDPALAFK
GGGPYGQEVT RGQDLTGKDF SGKTLIKQDF KTSILRQANF KGAKLIGASF FDADLTGADL SDADLRNADF SLANVTKANL
SNANLEGALA TGNTSFKGSI ITGADFTDVP LREDQREYLC KVADGVNPTT GNATRDTLFC N*