GBrowse Details

Vigan.04G360900.01

Basic Information:
Name: Vigan.04G360900.01
Multiple alignment
Variant Information
Position: Chr04:48111297..48112113 (+ strand)
Length: 817
Functional Information:
Description: Similar to Ribosomal protein L37. [V7CZ47, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L37e (IPR001569)
Ribosomal protein L37ae/L37e (IPR011331)
Zinc-binding ribosomal protein (IPR011332)
Ribosomal protein L37e, conserved site (IPR018267)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.34,24.54,17.46,14.07,47.70,40.06,32.63,14.70
Automatic updates:
Name: NM_001250326 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribosomal protein L37 (RPL37), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:48111297..48111376 (+ strand)
Length: 80
Type: five_prime_UTR
Position: Chr04:48111377..48111518 (+ strand)
Length: 142
Type: CDS
Position: Chr04:48111589..48111690 (+ strand)
Length: 102
Type: CDS
Position: Chr04:48111771..48111817 (+ strand)
Length: 47
Type: CDS
Position: Chr04:48111818..48112113 (+ strand)
Length: 296
Type: three_prime_UTR

>Vigan.04G360900.01 class=Sequence position=Chr04:48111297..48112113 (+ strand)
CAACTTCTTT CACTTCCTCT CATAGATCTA AGGTAAATTT GACTGTGTGT TGAGTCTGAT GATGTTTGGG TTTCGCATGG
ATGCAGGGGA AGGGAACAGG GAGTTTCGGC AAGAGGAGGA ACAAGACCCA CACGCTCTGT GTGAGGTGCG GCCGTCGCAG
CTTTCACCTT CAAAAGAGTC GGTGTTCTGC GTGCGCCTTC CCCGCTGCGC GCACCAGAAA ATGTATGTTT TTTTTATTAT
TAAATTGTAA GTGATTGTGT AAGATTCGGT TTTGAGTCTT TGATGGTTTC AGATAACTGG AGCGTTAAGG CCATCAGGAG
AAAGACTACC GGAACTGGAA GGATGAGGTA CCTGCGTCAC GTGCCTCGCA GATTTAAGAG CGGCTTTAGA GAGGGTATGG
GCGATTAATT ATTTGAGCGT TTAAATTTAG GGTTTGGTTT AGGGTTTTTC TTTAATGTTG TCGTTTTGAA TCAGGTACCG
AGGCAACACC AAGGAAGAGG GGGGCGGCTT CCACTACCTG AGCTTTGAAA GGAAACAATT TTTCTGGGTT AGTGAATTAT
AATAGTTTAG GGTTTTGTGC TATTTTTAAA TAACTTTTTT TTTCTGTCAT CTCAATTTTA TTTAATATGT AATGGATTTT
TATTTCGGCA TTTGATGGAT TTGATAGCCC AGTGTTCATT TGATCAATAT AGATTACACT TTGAGAGATA ACCCCATTAA
GAAATTTCAT GTATTTAATT TTAATTTTGT AATTTGTTGT TAATATTGGT TTGGTAAGGG TAAAACAACT TAGACATTAG
TTAGCTTAAC TACCTGA

>Vigan.04G360900.01
CAACTTCTTT CACTTCCTCT CATAGATCTA AGGTAAATTT GACTGTGTGT TGAGTCTGAT GATGTTTGGG TTTCGCATGG
ATGCAGGGGA AGGGAACAGG GAGTTTCGGC AAGAGGAGGA ACAAGACCCA CACGCTCTGT GTGAGGTGCG GCCGTCGCAG
CTTTCACCTT CAAAAGAGTC GGTGTTCTGC GTGCGCCTTC CCCGCTGCGC GCACCAGAAA ATATAACTGG AGCGTTAAGG
CCATCAGGAG AAAGACTACC GGAACTGGAA GGATGAGGTA CCTGCGTCAC GTGCCTCGCA GATTTAAGAG CGGCTTTAGA
GAGGGTACCG AGGCAACACC AAGGAAGAGG GGGGCGGCTT CCACTACCTG AGCTTTGAAA GGAAACAATT TTTCTGGGTT
AGTGAATTAT AATAGTTTAG GGTTTTGTGC TATTTTTAAA TAACTTTTTT TTTCTGTCAT CTCAATTTTA TTTAATATGT
AATGGATTTT TATTTCGGCA TTTGATGGAT TTGATAGCCC AGTGTTCATT TGATCAATAT AGATTACACT TTGAGAGATA
ACCCCATTAA GAAATTTCAT GTATTTAATT TTAATTTTGT AATTTGTTGT TAATATTGGT TTGGTAAGGG TAAAACAACT
TAGACATTAG TTAGCTTAAC TACCTGA

>Vigan.04G360900.01
ATGCAGGGGA AGGGAACAGG GAGTTTCGGC AAGAGGAGGA ACAAGACCCA CACGCTCTGT GTGAGGTGCG GCCGTCGCAG
CTTTCACCTT CAAAAGAGTC GGTGTTCTGC GTGCGCCTTC CCCGCTGCGC GCACCAGAAA ATATAACTGG AGCGTTAAGG
CCATCAGGAG AAAGACTACC GGAACTGGAA GGATGAGGTA CCTGCGTCAC GTGCCTCGCA GATTTAAGAG CGGCTTTAGA
GAGGGTACCG AGGCAACACC AAGGAAGAGG GGGGCGGCTT CCACTACCTG A

>Vigan.04G360900.01
MQGKGTGSFG KRRNKTHTLC VRCGRRSFHL QKSRCSACAF PAARTRKYNW SVKAIRRKTT GTGRMRYLRH VPRRFKSGFR
EGTEATPRKR GAASTT*