GBrowse Details

Vigan.04G356900.01

Basic Information:
Name: Vigan.04G356900.01
Multiple alignment
Variant Information
Position: Chr04:47775743..47778968 (+ strand)
Length: 3226
Functional Information:
Description: Similar to pollen-specific protein SF3-like isoform X2. [XP_004503223.1, Cicer arietinum]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, LIM-type (IPR001781)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.16,2.53,25.72,8.85,17.40,35.39,41.75,22.90
Arabidopsis thaliana homolog: AT2G39900.1
Automatic updates:
Name: BT093203 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-17A9 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254181 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pollen-specific protein SF3-like (LOC100809121), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47775743..47776255 (+ strand)
Length: 513
Type: five_prime_UTR
Position: Chr04:47776256..47776390 (+ strand)
Length: 135
Type: CDS
Position: Chr04:47777061..47777160 (+ strand)
Length: 100
Type: CDS
Position: Chr04:47777257..47777291 (+ strand)
Length: 35
Type: CDS
Position: Chr04:47777393..47777482 (+ strand)
Length: 90
Type: CDS
Position: Chr04:47778501..47778722 (+ strand)
Length: 222
Type: CDS
Position: Chr04:47778723..47778968 (+ strand)
Length: 246
Type: three_prime_UTR

>Vigan.04G356900.01 class=Sequence position=Chr04:47775743..47778968 (+ strand)
TTTTCATTAT GATGACCAAG ATATGATCTG TTATCAATCA ATATAAATTG AATGACATTC ATTTTCCAGA GTTCCAACCA
GAGTTGTCTC TCAACTTCAT CTTCTTGTTC TTATTCACTG TCGCCCTCAG AATTTCTCAC TCTATCTTTA TCTTCAGCTT
TTCAGTTCAA AGTTTCAGAT CACAACCGAT CCACCATTCA CCACTTTCTC TTCGCAAGGT ATGCTGAAAA TGAAATACCC
ATTTTGACTG CGTTAACTCT ATACCATTTC ATTTCTCTCA ACCATACCAA ACAGATTCAT TCATACGAGG ATTTTTTAAA
GCTTTCAAAA TTTGTTTTTT CTTCTTCGGT TTGCTCCAAC TTTTTGTGCT CATTGTTGTT AATGTTTTTG GTTGACATGG
GTAGCTCAAG TTATTGTCAT AGGCAAATCT AACACTAAAA GTAGTCATTG AAGCCGATCC AGTGCCTTGT GAATTTGGAA
TTGGTGGTGA AATTAGATCT AAAAGCCACA GCAATGTCTT TTATCGGAAC CCAGCAGAAG TGCAAGGCTT GTGAGAAAAC
GGTTTATCCC GTTGATCAGC TTTCTGCAGA TGGCACTGCT TATCACAAAG CTTGCTTCAG GTGCTCCCAC TGCAAAGGAA
CATTAAAGGT ACCTTTTTTG GCGTTATTAA TATGATTTTG ATTTTGTTTG TTTTTGTTAG TTGCATTATT TATTTGATGG
CTTATTAATA CTGTTGTTTA TTGATATTTG TTAAATTCTG CTAAAGATTC TTGCTTTTTG TTTGACGCTG CCTTGCATCC
ATGTGAAATT TCGACGGGAA TTTTAGCTGA TTAATAAAAA GATATAGTGA GTTTATGATC TTATCAGAAA TAGAATTGGG
ACACCACCCT CATTCTCTTT TTAGAATTTG ATGAAGCTAA GAATTTTTGG AGTCTAAAAT CTTCACTTGC TTATTGTAAT
GACACAGATC TGCTCCTTTT ACTTCGCGTC TGAAGAAATA AACTTTTCCA TAGATACTTA CAGGTGAAAA ATATAAGAAA
GTAAAATGCA TTGAACATTT CCAATAAGCT AAAATCAACT TATGCACGTT AACGGGAGGA GCAGCTCTAT TACCAAACTT
CTCTAAAAAT TGAAGTGCTT AAATTGATTT TAACTTATTG GAGAAAGTCA ATTCGTTTTA CCTTCTTATT TTCTTTCCAT
GAGTGTTTAT GAAGTTTTTT TCGAACAGTT AGTAATGTTG GGACACTAAC TGAGTTAGCA TTAGTGTATT TCAGTTTAAA
CTTTCATACG AATTATTTGA TGACCTTTTT TGTTTCAGCT GAGCAACTAT TCCTCAATGG AAGGAGTTCT TTACTGTAAA
CCTCACTATG AGCAGCTCTT CAAGGAGACT GGCACCTTCA GCAAGAACTT CCAGTCACGT ATGTGTTGTT CTTTTTCTTT
TTGAGGTGAA GCTGTGCTTG TGTGATTTTT GAATCAGATG TCGCTTTAAT TGGCCACATT TTCATTTTGA ACAGCTGCAA
AGTTAGCTGA TAAGACTACT CCTGAGCTGG TAAAAAGCTT TAGTTTGCAA TTTTCAAACT TCATTGTGAT AAACAGGTCT
GCAGCATTTG GTATTATTGA ATAACCATTG GCATCTTTTG TTTTTTCCAG ACAAGGTCAT CTAGCAAAGC TGCGAGCATG
TTTTCTGGCA CACAAGAAAA GTGTGCAACA TGTGGGAAAA CTGCTTATCC ATTGGAGAAG GTAGGATTAA AAAATCTCAA
GCAAAAATAC TTGATAATGG TCAATATTCA TGAAAATATT TTGTTACAAA TTAGGCATAT GGATGTTTAA GTGTTAGGAG
TCTTATATTG AGTAGAATAA ACTACTTGAT GTAGTTGTCA AGCCTTGAGA CTCTTTTATC TAATGGACTA GTATTTTAGG
TTTGGACTCC CCTTTTGGTC TGGTCTGGTA CACTTGATTC TATGAAATCA AGCGTGTTAC TGCCTCAAAA ATAATCCTGT
GCAAAAGAGG AGTTTGAACT TCATTTTCTT TTTGGACCAC AGCTAGACTC TGTATGGGGC ATATGGATGG ACATCCATAC
TTCCTTATCT TAATGGGAGA TAATTGTGTG GAGATAAACT TTCATATTTT ATTTCTGTGC TTAAGATGAT GAAACATATT
AGTTCATAAT TCTACAGGTC AAGAAAGCAA AATTATGTTT GCTTGTGAAT AATTGTGGAG CTTCTTCCTC CACCCACAAA
TGATTACTAT AAAATTTCCA TCTAACGAAA TCCATCCTGA GATAGTGACA TATACCTGGC AATTTGTGTT TGTGGTAATG
TCAAGCTCTT GTATCAGTTT CTTCTATTCT TCTGTCAATA GGATGGGAGA GTAGATTGGC ATTTGTTTTG GAAACTTTTC
AAAATTCATA GATTTTGAAT GAGAAATTGA TTGTTGTGTA GTGTGACATT GTTTTAGAAA ACTGTTTTAA AGCCAAAAGG
TAAGAAGGGA ATCAACCATG ACCTTGTTAC CCACTGAAAA TCATACTGGG GGTAGCTCTG TTAGAAAATG AGACTTTTTT
ACTTGAGAGA AGTAGCGCCG CTGGAATGAA AGTGGATAGT ATATAACCAA ACGGAAAAAT TTACTAACTT TATCTTGAAT
GAGAAAATGT AATTCTAATC ATTATAAATC TGCAGTTCTG CACATAACCA TAACTAGAAC TTAAATTTGG TTTTCTTGTT
ACTATTATAA ATGTGTGTAT CTTTTTGTTT GATTTTAGGT AACAGTGGAA GGGCAGGCCT ATCACAAATC ATGTTTCAAG
TGTTCACATG GTGGTTGTCC CATAACCCCA TCGAATTATG CAGCCCTTGA GGGCATTCTG TATTGCAAGC ACCATTTCTC
CCAGCTTTTC AAGGAGAAAG GGAGCTATAA TCATCTGACA AAGTCTGCAA CAATCAAACG GGCGGCGGCA GCAGCAGCAG
CCACTGTTCC AGAATCTTGA ATGTTGCTTC CTTCTTCTAT TGCCTTTTCT TTAACAGAAC ATTTTGGTCT ATCGAGCAAG
TGTTTGTATG TGTGGCTTTT TTTCTCTCGC GACTTCATCA TTTCTGATAT TTTTTACTTA CACATGCGTG GCGTGCAAAT
CTTGTGTGGT TTATTTATAC AATGGACATT CCGTAATGAC TAACGAGTGC TTGATTTGCA AGATTATCAT CCTAATTTGA
TGATATTGCC TCCTTTACAT TTTCCA

>Vigan.04G356900.01
TTTTCATTAT GATGACCAAG ATATGATCTG TTATCAATCA ATATAAATTG AATGACATTC ATTTTCCAGA GTTCCAACCA
GAGTTGTCTC TCAACTTCAT CTTCTTGTTC TTATTCACTG TCGCCCTCAG AATTTCTCAC TCTATCTTTA TCTTCAGCTT
TTCAGTTCAA AGTTTCAGAT CACAACCGAT CCACCATTCA CCACTTTCTC TTCGCAAGGT ATGCTGAAAA TGAAATACCC
ATTTTGACTG CGTTAACTCT ATACCATTTC ATTTCTCTCA ACCATACCAA ACAGATTCAT TCATACGAGG ATTTTTTAAA
GCTTTCAAAA TTTGTTTTTT CTTCTTCGGT TTGCTCCAAC TTTTTGTGCT CATTGTTGTT AATGTTTTTG GTTGACATGG
GTAGCTCAAG TTATTGTCAT AGGCAAATCT AACACTAAAA GTAGTCATTG AAGCCGATCC AGTGCCTTGT GAATTTGGAA
TTGGTGGTGA AATTAGATCT AAAAGCCACA GCAATGTCTT TTATCGGAAC CCAGCAGAAG TGCAAGGCTT GTGAGAAAAC
GGTTTATCCC GTTGATCAGC TTTCTGCAGA TGGCACTGCT TATCACAAAG CTTGCTTCAG GTGCTCCCAC TGCAAAGGAA
CATTAAAGCT GAGCAACTAT TCCTCAATGG AAGGAGTTCT TTACTGTAAA CCTCACTATG AGCAGCTCTT CAAGGAGACT
GGCACCTTCA GCAAGAACTT CCAGTCACCT GCAAAGTTAG CTGATAAGAC TACTCCTGAG CTGACAAGGT CATCTAGCAA
AGCTGCGAGC ATGTTTTCTG GCACACAAGA AAAGTGTGCA ACATGTGGGA AAACTGCTTA TCCATTGGAG AAGGTAACAG
TGGAAGGGCA GGCCTATCAC AAATCATGTT TCAAGTGTTC ACATGGTGGT TGTCCCATAA CCCCATCGAA TTATGCAGCC
CTTGAGGGCA TTCTGTATTG CAAGCACCAT TTCTCCCAGC TTTTCAAGGA GAAAGGGAGC TATAATCATC TGACAAAGTC
TGCAACAATC AAACGGGCGG CGGCAGCAGC AGCAGCCACT GTTCCAGAAT CTTGAATGTT GCTTCCTTCT TCTATTGCCT
TTTCTTTAAC AGAACATTTT GGTCTATCGA GCAAGTGTTT GTATGTGTGG CTTTTTTTCT CTCGCGACTT CATCATTTCT
GATATTTTTT ACTTACACAT GCGTGGCGTG CAAATCTTGT GTGGTTTATT TATACAATGG ACATTCCGTA ATGACTAACG
AGTGCTTGAT TTGCAAGATT ATCATCCTAA TTTGATGATA TTGCCTCCTT TACATTTTCC A

>Vigan.04G356900.01
ATGTCTTTTA TCGGAACCCA GCAGAAGTGC AAGGCTTGTG AGAAAACGGT TTATCCCGTT GATCAGCTTT CTGCAGATGG
CACTGCTTAT CACAAAGCTT GCTTCAGGTG CTCCCACTGC AAAGGAACAT TAAAGCTGAG CAACTATTCC TCAATGGAAG
GAGTTCTTTA CTGTAAACCT CACTATGAGC AGCTCTTCAA GGAGACTGGC ACCTTCAGCA AGAACTTCCA GTCACCTGCA
AAGTTAGCTG ATAAGACTAC TCCTGAGCTG ACAAGGTCAT CTAGCAAAGC TGCGAGCATG TTTTCTGGCA CACAAGAAAA
GTGTGCAACA TGTGGGAAAA CTGCTTATCC ATTGGAGAAG GTAACAGTGG AAGGGCAGGC CTATCACAAA TCATGTTTCA
AGTGTTCACA TGGTGGTTGT CCCATAACCC CATCGAATTA TGCAGCCCTT GAGGGCATTC TGTATTGCAA GCACCATTTC
TCCCAGCTTT TCAAGGAGAA AGGGAGCTAT AATCATCTGA CAAAGTCTGC AACAATCAAA CGGGCGGCGG CAGCAGCAGC
AGCCACTGTT CCAGAATCTT GA

>Vigan.04G356900.01
MSFIGTQQKC KACEKTVYPV DQLSADGTAY HKACFRCSHC KGTLKLSNYS SMEGVLYCKP HYEQLFKETG TFSKNFQSPA
KLADKTTPEL TRSSSKAASM FSGTQEKCAT CGKTAYPLEK VTVEGQAYHK SCFKCSHGGC PITPSNYAAL EGILYCKHHF
SQLFKEKGSY NHLTKSATIK RAAAAAAATV PES*